mRNA_C-australica_Contig_980.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_980.2.1
Unique NamemRNA_C-australica_Contig_980.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_980.2.1 vs. uniprot
Match: A0A6H5K4L0_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4L0_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.060e-22
Identity = 68/198 (34.34%), Postives = 100/198 (50.51%), Query Frame = 1 
Query:  118 YQVTHAGLLWGILAVSWSQIFYHITKTLFLVATREKGGDKWWWGATGHIIQALGWGMASGCASYDFWSQAL--PSYVGSADIPKRKRLQVWLWMYFVLSLACALPSYIFDYEADRHAG----GFMAVVGDAELWSLLLSGIAVIIAGFSAFRGSKVRRLDYAPTAEFTCGFLSAMTFSWFGPVMRVGQRRYLDFVDLP 693
            Y VT  G+LW  L++SW    Y   + +  V     G D   + ++   +  + W  AS   S D W +A   PS +GS  +P R++L    W ++ LS   AL + I   +   H G    G ++VV D  LW+++   +A+     S  RG++V      P  EFT  FLSA  FSWF PV+ +GQ++ LDF DLP
Sbjct:   70 YNVTATGVLWSTLSISWGLCIYQGVRAI--VELVRHGADTTVFVSS--TVLCIAWAAASVLRSRDHWREAAKEPS-IGSDGLPARRKLWWVFWPFYNLSFMTALVAVI---DRAGHGGKSWSGVVSVVADDRLWNVVALALALSFVSHSVARGAEVTLCTRKPNGEFTARFLSAGLFSWFSPVIDIGQKKQLDFDDLP 259
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_980.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K4L0_9PHAE1.060e-2234.34ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_980contigC-australica_Contig_980:3094..5325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G1Q3
PFAMsABC_membrane,ABC_tran
Model size772
Max annot lvl2759|Eukaryota
KEGG koko:K05665
KEGG TC3.A.1.208.8
KEGG Pathwayko01523,ko02010,ko04071,ko04977,ko05206,map01523,map02010,map04071,map04977,map05206
Hectar predicted targeting categoryother localisation
Exons9
Evalue4.73e-24
EggNOG OGsCOG1132@1|root,KOG0054@2759|Eukaryota
DescriptionATPase activity, coupled to transmembrane movement of substances
Cds size762
COG categoryV
BRITEko00000,ko00001,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_980.2.1prot_C-australica_Contig_980.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_980 3103..5325 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588847.799696-UTR-C-australica_Contig_980:3093..31021682588847.799696-UTR-C-australica_Contig_980:3093..3102Chrysoparadoxa australica CS_1217UTRC-australica_Contig_980 3094..3102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588847.8242505-CDS-C-australica_Contig_980:3102..32161682588847.8242505-CDS-C-australica_Contig_980:3102..3216Chrysoparadoxa australica CS_1217CDSC-australica_Contig_980 3103..3216 +
1682588847.8328655-CDS-C-australica_Contig_980:3395..34901682588847.8328655-CDS-C-australica_Contig_980:3395..3490Chrysoparadoxa australica CS_1217CDSC-australica_Contig_980 3396..3490 +
1682588847.8410683-CDS-C-australica_Contig_980:3664..37701682588847.8410683-CDS-C-australica_Contig_980:3664..3770Chrysoparadoxa australica CS_1217CDSC-australica_Contig_980 3665..3770 +
1682588847.8512619-CDS-C-australica_Contig_980:3947..40011682588847.8512619-CDS-C-australica_Contig_980:3947..4001Chrysoparadoxa australica CS_1217CDSC-australica_Contig_980 3948..4001 +
1682588847.8630896-CDS-C-australica_Contig_980:4109..41791682588847.8630896-CDS-C-australica_Contig_980:4109..4179Chrysoparadoxa australica CS_1217CDSC-australica_Contig_980 4110..4179 +
1682588847.8814564-CDS-C-australica_Contig_980:4418..44871682588847.8814564-CDS-C-australica_Contig_980:4418..4487Chrysoparadoxa australica CS_1217CDSC-australica_Contig_980 4419..4487 +
1682588847.892878-CDS-C-australica_Contig_980:4626..46731682588847.892878-CDS-C-australica_Contig_980:4626..4673Chrysoparadoxa australica CS_1217CDSC-australica_Contig_980 4627..4673 +
1682588847.9031773-CDS-C-australica_Contig_980:4949..50531682588847.9031773-CDS-C-australica_Contig_980:4949..5053Chrysoparadoxa australica CS_1217CDSC-australica_Contig_980 4950..5053 +
1682588847.915231-CDS-C-australica_Contig_980:5222..53251682588847.915231-CDS-C-australica_Contig_980:5222..5325Chrysoparadoxa australica CS_1217CDSC-australica_Contig_980 5223..5325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_980.2.1

>prot_C-australica_Contig_980.2.1 ID=prot_C-australica_Contig_980.2.1|Name=mRNA_C-australica_Contig_980.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=254bp
MVWWKGWRRSTKRVGLVSQDLSQRLIEGGGHEGGGVYQVTHAGLLWGILA
VSWSQIFYHITKTLFLVATREKGGDKWWWGATGHIIQALGWGMASGCASY
DFWSQALPSYVGSADIPKRKRLQVWLWMYFVLSLACALPSYIFDYEADRH
AGGFMAVVGDAELWSLLLSGIAVIIAGFSAFRGSKVRRLDYAPTAEFTCG
FLSAMTFSWFGPVMRVGQRRYLDFVDLPHLNHKERSKYNTAALQHELKVN
HRKL
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mRNA from alignment at C-australica_Contig_980:3094..5325+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_980.2.1 ID=mRNA_C-australica_Contig_980.2.1|Name=mRNA_C-australica_Contig_980.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2232bp|location=Sequence derived from alignment at C-australica_Contig_980:3094..5325+ (Chrysoparadoxa australica CS_1217)
GGGTACTCTATGGTTTGGTGGAAGGGTTGGAGGCGATCCACGAAGAGAGT
AGGCTTAGTGTCGCAGGATCTGTCGCAGAGGCTAATAGAGGGAGGAGGAC
ATGAAGGAGGCGGAGTGTATCAGGTGAGCTTTGTGCCAACCCCGTTTGCT
TGGTGGGTGACGTTAGGGACCGACATTGGAGAACATTGGTTACCCATTGA
TGTGTCCTGCACAAGGCACTTCCCTCCCAATCCTCAACTACTTTGGCAGG
CAGCAATATAGTGCTCTGGGCATGCCCTTAAATAATGCCCCAAAAAACCC
AGGTGACACATGCTGGTTTGCTCTGGGGCATCCTTGCCGTCTCCTGGTCC
CAGATCTTCTATCACATCACCAAAACCTTATTCCTCGTCGCCACAAGGTA
ACCAACCTACCATGCCTCGGGCACACTCCAGCCCATGAAGCCCGCATTTG
CCCAGCGTGAGACAACATGCGCTAGATGAACGGCCAGACTTGTTCTCCAA
TGTGACACCTAGCTTTTTTTTTTAACTTAGGTTATTTTAACTTAGTTGGC
TAACACTCTGACCTACTCCAGGGAAAAGGGAGGTGATAAATGGTGGTGGG
GTGCCACCGGTCATATTATCCAGGCTCTTGGGTGGGGAATGGCTAGTGGT
TGCGCTAGTTATGACTTCTGGAGCCAGGTGCTTAGCTTGTTCACTGTCCC
CTATCGTATTAACATATCTCTTTCACTCTAATCTCACCAGCGCTCCTGGA
AGCATTGGAACTGGGGCTTGCAGCACCTGATGCCACAATCATCGGTGCTT
GCCCTCTCTGGCTTACTTACCCCTTCTTTCCCTTTGGTGCGACCTTCCGC
ACAGGCCTTACCTTCATATGTAGGTTCAGCTGATATTCCTAAGCGCAAGC
GCTTGCAGGTTGGTAATGAAGAGAACCTAATCATTCACTGGGGTAGTTTA
ACTTGGACCCATTCGTTTAGATGTACACGTGCATTCATGCGCATCCCTTC
TCTCCCCACGGGGCAGGTGTGGCTGTGGATGTACTTTGTGTTGAGTCTGG
CATGCGCTTTGCCAAGCTATATCTTTGACTACGAAGGTACAACTCAATAC
AGTGCTTGCCTAGTGGCCTTGTGAAGATGGTCACATCTGCTCTACCGCAG
CTAATGCCCACCGCCCTGCTCTGCGTTGCAGATGCCCTACTCTGCTCAAC
TCAGATGAGACCAGCCACGTCACCTCAGCTTACTCTTACCAAACTTACAA
CTCAACTCAACTTATCTCCTCTACCCACCAAGCTGCTTGTTTACTCTGCT
CCTGTATTCTCTTCTTCATGCGCAGCCGACAGGCATGCTGGTGGGTTCAT
GGCAGTAGTAGGCGATGCTGAGCTATGGAGCCTCCTGCTCTCAGGTAGTG
TGGTCCCAGTTCTTCAATCCCTTCAATGCAATGCAAGCCCAGGGGCATAG
CCCAGCTCCAACTCCCACAGTACACCCCCATGGGCTGACCTGTCCAGGTT
GAATCTAACCAAACCACGTCCGTGACCCAAAAGGCATTGCAGTCATCATT
GCTGGCTTCAGTGCTTTTAGGGGCTCCAAGGTATGGGTATACTGTCCGTC
AGATGGCAATAGCACCAGAACCAATTACGTGATACCTTCTGATTGCAAGT
CTTCTCCGCGAGCTACCCAGTCAATGCTATCCAGCACCAAAGCATCCCCA
GAAGGGGACCTCACATCCTACGAGCAGCACGCATAGGAACTCCACTTAAG
CTTACCTATCTCCAATCTCACCTCAGCCACTTTATGACCTCCCCAACCCT
TACATAGCGCTGAGCCTCTAATGCTTTCTGCTTGCTTGCATCTAACGCCC
ACCTAGGTGAGACGGCTAGACTACGCCCCAACAGCTGAGTTCACGTGTGG
CTTCTTGAGCGCCATGACCTTCTCATGGTTTGGACCTGTCATGAGAGTAG
GGCAGAGAAGGTAACTTTCGTCCACTGTTATGAACCATGATTGATGAATG
ATGATAACATAACTCACTCTCTGATGAGTTAACTGATCGCTTTCTGACAC
CATATAATCCAACTTGCTGATGTATTATATGTGACGTACCGCCTCCCTTG
ATCTGTTGCCGTCCTTCAAACTCTCTTAGATATTTGGATTTTGTGGACCT
CCCTCACCTGAACCACAAGGAGCGCAGCAAGTACAACACGGCAGCACTGC
AACACGAGCTCAAAGTTAACCACAGGAAGCTA
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Coding sequence (CDS) from alignment at C-australica_Contig_980:3094..5325+

>mRNA_C-australica_Contig_980.2.1 ID=mRNA_C-australica_Contig_980.2.1|Name=mRNA_C-australica_Contig_980.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=762bp|location=Sequence derived from alignment at C-australica_Contig_980:3094..5325+ (Chrysoparadoxa australica CS_1217)
ATGGTTTGGTGGAAGGGTTGGAGGCGATCCACGAAGAGAGTAGGCTTAGT
GTCGCAGGATCTGTCGCAGAGGCTAATAGAGGGAGGAGGACATGAAGGAG
GCGGAGTGTATCAGGTGACACATGCTGGTTTGCTCTGGGGCATCCTTGCC
GTCTCCTGGTCCCAGATCTTCTATCACATCACCAAAACCTTATTCCTCGT
CGCCACAAGGGAAAAGGGAGGTGATAAATGGTGGTGGGGTGCCACCGGTC
ATATTATCCAGGCTCTTGGGTGGGGAATGGCTAGTGGTTGCGCTAGTTAT
GACTTCTGGAGCCAGGCCTTACCTTCATATGTAGGTTCAGCTGATATTCC
TAAGCGCAAGCGCTTGCAGGTGTGGCTGTGGATGTACTTTGTGTTGAGTC
TGGCATGCGCTTTGCCAAGCTATATCTTTGACTACGAAGCCGACAGGCAT
GCTGGTGGGTTCATGGCAGTAGTAGGCGATGCTGAGCTATGGAGCCTCCT
GCTCTCAGGCATTGCAGTCATCATTGCTGGCTTCAGTGCTTTTAGGGGCT
CCAAGGTGAGACGGCTAGACTACGCCCCAACAGCTGAGTTCACGTGTGGC
TTCTTGAGCGCCATGACCTTCTCATGGTTTGGACCTGTCATGAGAGTAGG
GCAGAGAAGATATTTGGATTTTGTGGACCTCCCTCACCTGAACCACAAGG
AGCGCAGCAAGTACAACACGGCAGCACTGCAACACGAGCTCAAAGTTAAC
CACAGGAAGCTA
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