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Homology
BLAST of mRNA_C-australica_Contig_980.2.1 vs. uniprot
Match: A0A6H5K4L0_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4L0_9PHAE) HSP 1 Score: 107 bits (267), Expect = 1.060e-22 Identity = 68/198 (34.34%), Postives = 100/198 (50.51%), Query Frame = 1 Query: 118 YQVTHAGLLWGILAVSWSQIFYHITKTLFLVATREKGGDKWWWGATGHIIQALGWGMASGCASYDFWSQAL--PSYVGSADIPKRKRLQVWLWMYFVLSLACALPSYIFDYEADRHAG----GFMAVVGDAELWSLLLSGIAVIIAGFSAFRGSKVRRLDYAPTAEFTCGFLSAMTFSWFGPVMRVGQRRYLDFVDLP 693
Y VT G+LW L++SW Y + + V G D + ++ + + W AS S D W +A PS +GS +P R++L W ++ LS AL + I + H G G ++VV D LW+++ +A+ S RG++V P EFT FLSA FSWF PV+ +GQ++ LDF DLP
Sbjct: 70 YNVTATGVLWSTLSISWGLCIYQGVRAI--VELVRHGADTTVFVSS--TVLCIAWAAASVLRSRDHWREAAKEPS-IGSDGLPARRKLWWVFWPFYNLSFMTALVAVI---DRAGHGGKSWSGVVSVVADDRLWNVVALALALSFVSHSVARGAEVTLCTRKPNGEFTARFLSAGLFSWFSPVIDIGQKKQLDFDDLP 259
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 1 |
| Seed ortholog | 2880.D7G1Q3 |
| PFAMs | ABC_membrane,ABC_tran |
| Model size | 772 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K05665 |
| KEGG TC | 3.A.1.208.8 |
| KEGG Pathway | ko01523,ko02010,ko04071,ko04977,ko05206,map01523,map02010,map04071,map04977,map05206 |
| Hectar predicted targeting category | other localisation |
| Exons | 9 |
| Evalue | 4.73e-24 |
| EggNOG OGs | COG1132@1|root,KOG0054@2759|Eukaryota |
| Description | ATPase activity, coupled to transmembrane movement of substances |
| Cds size | 762 |
| COG category | V |
| BRITE | ko00000,ko00001,ko02000 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682588847.799696-UTR-C-australica_Contig_980:3093..3102 | 1682588847.799696-UTR-C-australica_Contig_980:3093..3102 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_980 3094..3102 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682588847.8242505-CDS-C-australica_Contig_980:3102..3216 | 1682588847.8242505-CDS-C-australica_Contig_980:3102..3216 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_980 3103..3216 + |
| 1682588847.8328655-CDS-C-australica_Contig_980:3395..3490 | 1682588847.8328655-CDS-C-australica_Contig_980:3395..3490 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_980 3396..3490 + |
| 1682588847.8410683-CDS-C-australica_Contig_980:3664..3770 | 1682588847.8410683-CDS-C-australica_Contig_980:3664..3770 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_980 3665..3770 + |
| 1682588847.8512619-CDS-C-australica_Contig_980:3947..4001 | 1682588847.8512619-CDS-C-australica_Contig_980:3947..4001 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_980 3948..4001 + |
| 1682588847.8630896-CDS-C-australica_Contig_980:4109..4179 | 1682588847.8630896-CDS-C-australica_Contig_980:4109..4179 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_980 4110..4179 + |
| 1682588847.8814564-CDS-C-australica_Contig_980:4418..4487 | 1682588847.8814564-CDS-C-australica_Contig_980:4418..4487 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_980 4419..4487 + |
| 1682588847.892878-CDS-C-australica_Contig_980:4626..4673 | 1682588847.892878-CDS-C-australica_Contig_980:4626..4673 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_980 4627..4673 + |
| 1682588847.9031773-CDS-C-australica_Contig_980:4949..5053 | 1682588847.9031773-CDS-C-australica_Contig_980:4949..5053 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_980 4950..5053 + |
| 1682588847.915231-CDS-C-australica_Contig_980:5222..5325 | 1682588847.915231-CDS-C-australica_Contig_980:5222..5325 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_980 5223..5325 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_980.2.1 >prot_C-australica_Contig_980.2.1 ID=prot_C-australica_Contig_980.2.1|Name=mRNA_C-australica_Contig_980.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=254bp
MVWWKGWRRSTKRVGLVSQDLSQRLIEGGGHEGGGVYQVTHAGLLWGILA
VSWSQIFYHITKTLFLVATREKGGDKWWWGATGHIIQALGWGMASGCASY
DFWSQALPSYVGSADIPKRKRLQVWLWMYFVLSLACALPSYIFDYEADRH
AGGFMAVVGDAELWSLLLSGIAVIIAGFSAFRGSKVRRLDYAPTAEFTCG
FLSAMTFSWFGPVMRVGQRRYLDFVDLPHLNHKERSKYNTAALQHELKVN
HRKL back to topmRNA from alignment at C-australica_Contig_980:3094..5325+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-australica_Contig_980.2.1 ID=mRNA_C-australica_Contig_980.2.1|Name=mRNA_C-australica_Contig_980.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2232bp|location=Sequence derived from alignment at C-australica_Contig_980:3094..5325+ (Chrysoparadoxa australica CS_1217)
GGGTACTCTATGGTTTGGTGGAAGGGTTGGAGGCGATCCACGAAGAGAGT
AGGCTTAGTGTCGCAGGATCTGTCGCAGAGGCTAATAGAGGGAGGAGGAC
ATGAAGGAGGCGGAGTGTATCAGGTGAGCTTTGTGCCAACCCCGTTTGCT
TGGTGGGTGACGTTAGGGACCGACATTGGAGAACATTGGTTACCCATTGA
TGTGTCCTGCACAAGGCACTTCCCTCCCAATCCTCAACTACTTTGGCAGG
CAGCAATATAGTGCTCTGGGCATGCCCTTAAATAATGCCCCAAAAAACCC
AGGTGACACATGCTGGTTTGCTCTGGGGCATCCTTGCCGTCTCCTGGTCC
CAGATCTTCTATCACATCACCAAAACCTTATTCCTCGTCGCCACAAGGTA
ACCAACCTACCATGCCTCGGGCACACTCCAGCCCATGAAGCCCGCATTTG
CCCAGCGTGAGACAACATGCGCTAGATGAACGGCCAGACTTGTTCTCCAA
TGTGACACCTAGCTTTTTTTTTTAACTTAGGTTATTTTAACTTAGTTGGC
TAACACTCTGACCTACTCCAGGGAAAAGGGAGGTGATAAATGGTGGTGGG
GTGCCACCGGTCATATTATCCAGGCTCTTGGGTGGGGAATGGCTAGTGGT
TGCGCTAGTTATGACTTCTGGAGCCAGGTGCTTAGCTTGTTCACTGTCCC
CTATCGTATTAACATATCTCTTTCACTCTAATCTCACCAGCGCTCCTGGA
AGCATTGGAACTGGGGCTTGCAGCACCTGATGCCACAATCATCGGTGCTT
GCCCTCTCTGGCTTACTTACCCCTTCTTTCCCTTTGGTGCGACCTTCCGC
ACAGGCCTTACCTTCATATGTAGGTTCAGCTGATATTCCTAAGCGCAAGC
GCTTGCAGGTTGGTAATGAAGAGAACCTAATCATTCACTGGGGTAGTTTA
ACTTGGACCCATTCGTTTAGATGTACACGTGCATTCATGCGCATCCCTTC
TCTCCCCACGGGGCAGGTGTGGCTGTGGATGTACTTTGTGTTGAGTCTGG
CATGCGCTTTGCCAAGCTATATCTTTGACTACGAAGGTACAACTCAATAC
AGTGCTTGCCTAGTGGCCTTGTGAAGATGGTCACATCTGCTCTACCGCAG
CTAATGCCCACCGCCCTGCTCTGCGTTGCAGATGCCCTACTCTGCTCAAC
TCAGATGAGACCAGCCACGTCACCTCAGCTTACTCTTACCAAACTTACAA
CTCAACTCAACTTATCTCCTCTACCCACCAAGCTGCTTGTTTACTCTGCT
CCTGTATTCTCTTCTTCATGCGCAGCCGACAGGCATGCTGGTGGGTTCAT
GGCAGTAGTAGGCGATGCTGAGCTATGGAGCCTCCTGCTCTCAGGTAGTG
TGGTCCCAGTTCTTCAATCCCTTCAATGCAATGCAAGCCCAGGGGCATAG
CCCAGCTCCAACTCCCACAGTACACCCCCATGGGCTGACCTGTCCAGGTT
GAATCTAACCAAACCACGTCCGTGACCCAAAAGGCATTGCAGTCATCATT
GCTGGCTTCAGTGCTTTTAGGGGCTCCAAGGTATGGGTATACTGTCCGTC
AGATGGCAATAGCACCAGAACCAATTACGTGATACCTTCTGATTGCAAGT
CTTCTCCGCGAGCTACCCAGTCAATGCTATCCAGCACCAAAGCATCCCCA
GAAGGGGACCTCACATCCTACGAGCAGCACGCATAGGAACTCCACTTAAG
CTTACCTATCTCCAATCTCACCTCAGCCACTTTATGACCTCCCCAACCCT
TACATAGCGCTGAGCCTCTAATGCTTTCTGCTTGCTTGCATCTAACGCCC
ACCTAGGTGAGACGGCTAGACTACGCCCCAACAGCTGAGTTCACGTGTGG
CTTCTTGAGCGCCATGACCTTCTCATGGTTTGGACCTGTCATGAGAGTAG
GGCAGAGAAGGTAACTTTCGTCCACTGTTATGAACCATGATTGATGAATG
ATGATAACATAACTCACTCTCTGATGAGTTAACTGATCGCTTTCTGACAC
CATATAATCCAACTTGCTGATGTATTATATGTGACGTACCGCCTCCCTTG
ATCTGTTGCCGTCCTTCAAACTCTCTTAGATATTTGGATTTTGTGGACCT
CCCTCACCTGAACCACAAGGAGCGCAGCAAGTACAACACGGCAGCACTGC
AACACGAGCTCAAAGTTAACCACAGGAAGCTA back to topCoding sequence (CDS) from alignment at C-australica_Contig_980:3094..5325+ >mRNA_C-australica_Contig_980.2.1 ID=mRNA_C-australica_Contig_980.2.1|Name=mRNA_C-australica_Contig_980.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=762bp|location=Sequence derived from alignment at C-australica_Contig_980:3094..5325+ (Chrysoparadoxa australica CS_1217)
ATGGTTTGGTGGAAGGGTTGGAGGCGATCCACGAAGAGAGTAGGCTTAGT
GTCGCAGGATCTGTCGCAGAGGCTAATAGAGGGAGGAGGACATGAAGGAG
GCGGAGTGTATCAGGTGACACATGCTGGTTTGCTCTGGGGCATCCTTGCC
GTCTCCTGGTCCCAGATCTTCTATCACATCACCAAAACCTTATTCCTCGT
CGCCACAAGGGAAAAGGGAGGTGATAAATGGTGGTGGGGTGCCACCGGTC
ATATTATCCAGGCTCTTGGGTGGGGAATGGCTAGTGGTTGCGCTAGTTAT
GACTTCTGGAGCCAGGCCTTACCTTCATATGTAGGTTCAGCTGATATTCC
TAAGCGCAAGCGCTTGCAGGTGTGGCTGTGGATGTACTTTGTGTTGAGTC
TGGCATGCGCTTTGCCAAGCTATATCTTTGACTACGAAGCCGACAGGCAT
GCTGGTGGGTTCATGGCAGTAGTAGGCGATGCTGAGCTATGGAGCCTCCT
GCTCTCAGGCATTGCAGTCATCATTGCTGGCTTCAGTGCTTTTAGGGGCT
CCAAGGTGAGACGGCTAGACTACGCCCCAACAGCTGAGTTCACGTGTGGC
TTCTTGAGCGCCATGACCTTCTCATGGTTTGGACCTGTCATGAGAGTAGG
GCAGAGAAGATATTTGGATTTTGTGGACCTCCCTCACCTGAACCACAAGG
AGCGCAGCAAGTACAACACGGCAGCACTGCAACACGAGCTCAAAGTTAAC
CACAGGAAGCTA back to top
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