Homology
BLAST of mRNA_C-australica_Contig_98.19.1 vs. uniprot
Match:
D7FVS9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS9_ECTSI)
HSP 1 Score: 90.1 bits (222), Expect = 1.240e-18
Identity = 49/121 (40.50%), Postives = 67/121 (55.37%), Query Frame = 2
Query: 83 LAVASESPAAVRKLMLRWRHHFTRELGRKLAELDVRRDSFLSELSSKSIDGNDKAYA--VSHQVRRFHSWLLEERLRLLRCVELRCEECWRRVLSAKDDHGRTALHWAASLKGSEEVMEAL 439
+AV +++ V+ LM WR + L +L LD RRD F+ + G + V RF WL +ER RL+R ELRCEECWR+ ++++DD GRT LHWAAS SE + L
Sbjct: 1 MAVGTKNVRMVKTLMQYWRRDLNQRLEDELDFLDHRRDMFIQGVDVPQTTGGGRPAGKITIDDVDRFERWLFDERRRLVRVTELRCEECWRKSVTSRDDRGRTPLHWAASGTSSEAALLVL 121
BLAST of mRNA_C-australica_Contig_98.19.1 vs. uniprot
Match:
A0A8J2SL70_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SL70_9STRA)
HSP 1 Score: 55.8 bits (133), Expect = 5.070e-5
Identity = 47/146 (32.19%), Postives = 67/146 (45.89%), Query Frame = 2
Query: 32 GDQAALLRGTEGCTALHLAVASESPAAVRKLMLRWRHHFTRELGRKLAELDVRRDSFLSELSSKSIDGNDKAYAVSHQVRRFHSWLLEERLRLLRCVELRCEECWRRVLSAKDDHGRTALHWAASLKGSEEVMEAL--LRTGRANL 463
G + AL+ +G TA H A ++ WR + E RK+++L R L E S N V H++R + + E R LR ELRCE WR +A+DD GRT LH+A + + + L TG A+L
Sbjct: 304 GLRCALVADQKGRTACHYAALQGRHDVLQSFGEAWRAQASEEYDRKVSDLRGR----LVEASRDCRRRN-----VEHELRGAYEFAAREADRELRQRELRCEAAWRTCCTARDDLGRTPLHYAVACVDAAHTALTVKALMTGSADL 440
BLAST of mRNA_C-australica_Contig_98.19.1 vs. uniprot
Match:
A0A7S2AZM3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZM3_9STRA)
HSP 1 Score: 53.5 bits (127), Expect = 5.320e-5
Identity = 32/82 (39.02%), Postives = 45/82 (54.88%), Query Frame = 2
Query: 275 FHSWLLEERLRLLRCVELRCEECWRRVLSAKDDHGRTALHWAASLKGSE----EVMEALLRT-GRANLGHDEAPHQSAMDDA 505
F W+ +E R+ R EL CE WRRV++A D GRTALH+AA+ S+ + AL R+ RA++ A +DA
Sbjct: 78 FMDWVSDEADRITRSCELSCEAAWRRVVTAVDKQGRTALHYAAACAPSDVAASSTIAALWRSDARADINRLSAARLEPKEDA 159
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_98.19.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 1.24e-18 / Id = 40.50 Expect = 5.07e-5 / Id = 32.19 Expect = 5.32e-5 / Id = 39.02 Sequence D7FVS9_ECTSI A0A8J2SL70_9STRA A0A7S2AZM3_9STRA back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 874 Hectar predicted targeting category other localisation Exons 9 Cds size 864
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682588847.4044626-UTR-C-australica_Contig_98:60414..60424 1682588847.4044626-UTR-C-australica_Contig_98:60414..60424 Chrysoparadoxa australica CS_1217 UTR C-australica_Contig_98 60415..60424 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682588847.4151983-CDS-C-australica_Contig_98:60424..60447 1682588847.4151983-CDS-C-australica_Contig_98:60424..60447 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_98 60425..60447 + 1682588847.425984-CDS-C-australica_Contig_98:60527..60626 1682588847.425984-CDS-C-australica_Contig_98:60527..60626 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_98 60528..60626 + 1682588847.4372203-CDS-C-australica_Contig_98:60689..60810 1682588847.4372203-CDS-C-australica_Contig_98:60689..60810 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_98 60690..60810 + 1682588847.449129-CDS-C-australica_Contig_98:60971..61033 1682588847.449129-CDS-C-australica_Contig_98:60971..61033 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_98 60972..61033 + 1682588847.4596677-CDS-C-australica_Contig_98:61182..61244 1682588847.4596677-CDS-C-australica_Contig_98:61182..61244 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_98 61183..61244 + 1682588847.4741304-CDS-C-australica_Contig_98:61334..61454 1682588847.4741304-CDS-C-australica_Contig_98:61334..61454 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_98 61335..61454 + 1682588847.4839463-CDS-C-australica_Contig_98:61606..61691 1682588847.4839463-CDS-C-australica_Contig_98:61606..61691 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_98 61607..61691 + 1682588847.4938452-CDS-C-australica_Contig_98:61847..61921 1682588847.4938452-CDS-C-australica_Contig_98:61847..61921 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_98 61848..61921 + 1682588847.5046353-CDS-C-australica_Contig_98:62138..62356 1682588847.5046353-CDS-C-australica_Contig_98:62138..62356 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_98 62139..62356 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_98.19.1
>prot_C-australica_Contig_98.19.1 ID=prot_C-australica_Contig_98.19.1|Name=mRNA_C-australica_Contig_98.19.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=288bp
MEAEKLHGDQAALLRGTEGCTALHLAVASESPAAVRKLMLRWRHHFTREL back to top mRNA from alignment at C-australica_Contig_98:60415..62356+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_98.19.1 ID=mRNA_C-australica_Contig_98.19.1|Name=mRNA_C-australica_Contig_98.19.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1942bp|location=Sequence derived from alignment at C-australica_Contig_98:60415..62356+ (Chrysoparadoxa australica CS_1217)GGAAGAGGCA ATGGAGGCTGAGAAACTGCACGG GTGAACTCCACATGACG
CCACACCCCAGGCTTATGCCACCAAACTCACATGCTCTGGCTCTGGCACA
TCCCATTGCTCAGGGACCAAGCTGCACTGCTGAGGGGCACCGAAGGGTGC
ACAGCCTTGCACCTAGCTGTTGCAAGCGAAAGCCCTGCAGCAGTCCGGAA
GCTGATGCTTAG GTAAACCTCACTGACTTGCTCTGGCTTTTAGCTGTGTT
GCTTCACGGAAGGATGTTTCATCAGGTGGCGGCACCACTTCACAAGGGAG
TTGGGGAGAAAGCTGGCAGAGCTGGACGTTCGGCGGGACTCCTTTTTGAG
CGAGCTGTCTAGCAAAAGCATCGATGGCAACGACAAGGCATATGCG GTAC
AGCTAGGCACTGTTTTGAATCTTTTAGCACATTTGCCCTGAAGGCCATCA
CCTGGCATCACCTCATGGCTTACCGCCCGCACCTTTGTCATACCATGGGC
ACCGCTCTCCGAGGAGTTGTAACAAGCCACTGTAATTCTCATGATGCAAC
CTTTAAGGTGTCACACCAGGTCAGGAGGTTCCACAGCTGGCTTCTTGAAG
AGAGACTTAGGCTCCTTAG GTACCAGAATTGCAGTAGGATAACTGAACTG
ACTAGTATCATACTTTAGTGGGTGGTGTGAGCATGTTCTCTTGATTAGCT
TTATTGTGCATTACATCTCCTTGCTTTCTCGATTGCACCGGTATGATCTT
CGTGATTTTTCTTCCTAGATGTGTGGAACTGAGGTGTGAGGAATGCTGGA
GGAGGGTACTGTCAGCAAAAGACGACCACG GTGAGCTCAAGCTGCTTGCT
ACTCACACCGACAAACGTAGCCATAGCCATGGGCAATGACTGGGACATGT
TTTTTTTCCTCCTCCTGCAGGCCGAACTGCCCTGCACTGGGCAGCATCCT
TGAAGGGCAGCGAGGAGGTGATGGAGGCTCTGCTCCGTACCGGGAGGGCC
AACCTCGGTCACGATGAAGCACCTCATCAGTCAGCCATGG GTGAGAAGAG
AGCTGTGAATGGCTCACCTGCTACTATTATAACAGAATAGATTGGTTTCT
CACTGCTCTTCCCTCACCCTATTGCCAACCCTTTTAACCCCTCTCCAAGT
GCTTCAGAGTGACTCAGCTCCCACACAAACTCTATGCCCCAGATGACGCG
CTGCTGTCACGGGCAGTGGAGCTTATAGGGAAAGGCAGAGAACCCACTGT
TATACAGCAGCACCTGGAGCAAATTAG GTCTTTGCATACCCCTCTTCACA
CTCCTTTGAAAAACTGAGGCTTAAGTCTTGCTATAACTCTAAGAGCTTCC
CCTTTGATGCATAGTAGCCCGTTTCCTGATGGCTTGGAATCAATCATCTT
TCTACAGTTTTAAAACTCAAATATTTGTCCCAGGCATGGTTTCACTGCGC
GGCATTGCAAAGGGCATCCTCTCTTCCCTCGAAATGAGATGTTCCACTTT
TACACAG GTACCGAACCAACAAAACTTCAAAGAGTTTCATCGGGGGCAGA
GCTGCTGGTCCTGCTGCTGGAGAGGCCAGCTCTCACTCATCTGAGGCCAG
CTCTCTCTCATCTCCGCTGCACAAATGACTGACTTAACGGAGAGATTTCT
TACCCCCCAGCTTGGCTAGCACCCATTTCACCAACTCACTTTGCCAGCTC
ACTCTTCCCACGGCATCTCCTCAGGCACAGCAGAGACATTCGACAGTGCC
AGGCTCAGCACTGCTGATCCCCGGGCACCGCTTGATGGCCAGATGAGGGA
GGGCACCCCCACAGGGATGAACAGGAGCCAGCCCCCAAGCATTGCGAAAG
TCGCTTGGTTCTGCCGGACACTGGGAGACAGGGCCTCCGCAGCAGCTAAG
GCCTCCAGCAGAGGTGAGATTGAGTACAGACTGCACTGCTGA back to top Coding sequence (CDS) from alignment at C-australica_Contig_98:60415..62356+
>mRNA_C-australica_Contig_98.19.1 ID=mRNA_C-australica_Contig_98.19.1|Name=mRNA_C-australica_Contig_98.19.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=864bp|location=Sequence derived from alignment at C-australica_Contig_98:60415..62356+ (Chrysoparadoxa australica CS_1217) back to top