mRNA_C-australica_Contig_98.19.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_98.19.1
Unique NamemRNA_C-australica_Contig_98.19.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_98.19.1 vs. uniprot
Match: D7FVS9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS9_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.240e-18
Identity = 49/121 (40.50%), Postives = 67/121 (55.37%), Query Frame = 2 
Query:   83 LAVASESPAAVRKLMLRWRHHFTRELGRKLAELDVRRDSFLSELSSKSIDGNDKAYA--VSHQVRRFHSWLLEERLRLLRCVELRCEECWRRVLSAKDDHGRTALHWAASLKGSEEVMEAL 439
            +AV +++   V+ LM  WR    + L  +L  LD RRD F+  +      G  +         V RF  WL +ER RL+R  ELRCEECWR+ ++++DD GRT LHWAAS   SE  +  L
Sbjct:    1 MAVGTKNVRMVKTLMQYWRRDLNQRLEDELDFLDHRRDMFIQGVDVPQTTGGGRPAGKITIDDVDRFERWLFDERRRLVRVTELRCEECWRKSVTSRDDRGRTPLHWAASGTSSEAALLVL 121
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BLAST of mRNA_C-australica_Contig_98.19.1 vs. uniprot
Match: A0A8J2SL70_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SL70_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.070e-5
Identity = 47/146 (32.19%), Postives = 67/146 (45.89%), Query Frame = 2 
Query:   32 GDQAALLRGTEGCTALHLAVASESPAAVRKLMLRWRHHFTRELGRKLAELDVRRDSFLSELSSKSIDGNDKAYAVSHQVRRFHSWLLEERLRLLRCVELRCEECWRRVLSAKDDHGRTALHWAASLKGSEEVMEAL--LRTGRANL 463
            G + AL+   +G TA H A        ++     WR   + E  RK+++L  R    L E S      N     V H++R  + +   E  R LR  ELRCE  WR   +A+DD GRT LH+A +   +      +  L TG A+L
Sbjct:  304 GLRCALVADQKGRTACHYAALQGRHDVLQSFGEAWRAQASEEYDRKVSDLRGR----LVEASRDCRRRN-----VEHELRGAYEFAAREADRELRQRELRCEAAWRTCCTARDDLGRTPLHYAVACVDAAHTALTVKALMTGSADL 440
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BLAST of mRNA_C-australica_Contig_98.19.1 vs. uniprot
Match: A0A7S2AZM3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZM3_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.320e-5
Identity = 32/82 (39.02%), Postives = 45/82 (54.88%), Query Frame = 2 
Query:  275 FHSWLLEERLRLLRCVELRCEECWRRVLSAKDDHGRTALHWAASLKGSE----EVMEALLRT-GRANLGHDEAPHQSAMDDA 505
            F  W+ +E  R+ R  EL CE  WRRV++A D  GRTALH+AA+   S+      + AL R+  RA++    A      +DA
Sbjct:   78 FMDWVSDEADRITRSCELSCEAAWRRVVTAVDKQGRTALHYAAACAPSDVAASSTIAALWRSDARADINRLSAARLEPKEDA 159
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_98.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVS9_ECTSI1.240e-1840.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J2SL70_9STRA5.070e-532.19Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2AZM3_9STRA5.320e-539.02Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_98contigC-australica_Contig_98:60415..62356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size874
Hectar predicted targeting categoryother localisation
Exons9
Cds size864
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_98.19.1prot_C-australica_Contig_98.19.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_98 60425..62356 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588847.4044626-UTR-C-australica_Contig_98:60414..604241682588847.4044626-UTR-C-australica_Contig_98:60414..60424Chrysoparadoxa australica CS_1217UTRC-australica_Contig_98 60415..60424 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588847.4151983-CDS-C-australica_Contig_98:60424..604471682588847.4151983-CDS-C-australica_Contig_98:60424..60447Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 60425..60447 +
1682588847.425984-CDS-C-australica_Contig_98:60527..606261682588847.425984-CDS-C-australica_Contig_98:60527..60626Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 60528..60626 +
1682588847.4372203-CDS-C-australica_Contig_98:60689..608101682588847.4372203-CDS-C-australica_Contig_98:60689..60810Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 60690..60810 +
1682588847.449129-CDS-C-australica_Contig_98:60971..610331682588847.449129-CDS-C-australica_Contig_98:60971..61033Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 60972..61033 +
1682588847.4596677-CDS-C-australica_Contig_98:61182..612441682588847.4596677-CDS-C-australica_Contig_98:61182..61244Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 61183..61244 +
1682588847.4741304-CDS-C-australica_Contig_98:61334..614541682588847.4741304-CDS-C-australica_Contig_98:61334..61454Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 61335..61454 +
1682588847.4839463-CDS-C-australica_Contig_98:61606..616911682588847.4839463-CDS-C-australica_Contig_98:61606..61691Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 61607..61691 +
1682588847.4938452-CDS-C-australica_Contig_98:61847..619211682588847.4938452-CDS-C-australica_Contig_98:61847..61921Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 61848..61921 +
1682588847.5046353-CDS-C-australica_Contig_98:62138..623561682588847.5046353-CDS-C-australica_Contig_98:62138..62356Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 62139..62356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_98.19.1

>prot_C-australica_Contig_98.19.1 ID=prot_C-australica_Contig_98.19.1|Name=mRNA_C-australica_Contig_98.19.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=288bp
MEAEKLHGDQAALLRGTEGCTALHLAVASESPAAVRKLMLRWRHHFTREL
GRKLAELDVRRDSFLSELSSKSIDGNDKAYAVSHQVRRFHSWLLEERLRL
LRCVELRCEECWRRVLSAKDDHGRTALHWAASLKGSEEVMEALLRTGRAN
LGHDEAPHQSAMDDALLSRAVELIGKGREPTVIQQHLEQIRHGFTARHCK
GHPLFPRNEMFHFYTGTAETFDSARLSTADPRAPLDGQMREGTPTGMNRS
QPPSIAKVAWFCRTLGDRASAAAKASSRGEIEYRLHC*
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mRNA from alignment at C-australica_Contig_98:60415..62356+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_98.19.1 ID=mRNA_C-australica_Contig_98.19.1|Name=mRNA_C-australica_Contig_98.19.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1942bp|location=Sequence derived from alignment at C-australica_Contig_98:60415..62356+ (Chrysoparadoxa australica CS_1217)
GGAAGAGGCAATGGAGGCTGAGAAACTGCACGGGTGAACTCCACATGACG
CCACACCCCAGGCTTATGCCACCAAACTCACATGCTCTGGCTCTGGCACA
TCCCATTGCTCAGGGACCAAGCTGCACTGCTGAGGGGCACCGAAGGGTGC
ACAGCCTTGCACCTAGCTGTTGCAAGCGAAAGCCCTGCAGCAGTCCGGAA
GCTGATGCTTAGGTAAACCTCACTGACTTGCTCTGGCTTTTAGCTGTGTT
GCTTCACGGAAGGATGTTTCATCAGGTGGCGGCACCACTTCACAAGGGAG
TTGGGGAGAAAGCTGGCAGAGCTGGACGTTCGGCGGGACTCCTTTTTGAG
CGAGCTGTCTAGCAAAAGCATCGATGGCAACGACAAGGCATATGCGGTAC
AGCTAGGCACTGTTTTGAATCTTTTAGCACATTTGCCCTGAAGGCCATCA
CCTGGCATCACCTCATGGCTTACCGCCCGCACCTTTGTCATACCATGGGC
ACCGCTCTCCGAGGAGTTGTAACAAGCCACTGTAATTCTCATGATGCAAC
CTTTAAGGTGTCACACCAGGTCAGGAGGTTCCACAGCTGGCTTCTTGAAG
AGAGACTTAGGCTCCTTAGGTACCAGAATTGCAGTAGGATAACTGAACTG
ACTAGTATCATACTTTAGTGGGTGGTGTGAGCATGTTCTCTTGATTAGCT
TTATTGTGCATTACATCTCCTTGCTTTCTCGATTGCACCGGTATGATCTT
CGTGATTTTTCTTCCTAGATGTGTGGAACTGAGGTGTGAGGAATGCTGGA
GGAGGGTACTGTCAGCAAAAGACGACCACGGTGAGCTCAAGCTGCTTGCT
ACTCACACCGACAAACGTAGCCATAGCCATGGGCAATGACTGGGACATGT
TTTTTTTCCTCCTCCTGCAGGCCGAACTGCCCTGCACTGGGCAGCATCCT
TGAAGGGCAGCGAGGAGGTGATGGAGGCTCTGCTCCGTACCGGGAGGGCC
AACCTCGGTCACGATGAAGCACCTCATCAGTCAGCCATGGGTGAGAAGAG
AGCTGTGAATGGCTCACCTGCTACTATTATAACAGAATAGATTGGTTTCT
CACTGCTCTTCCCTCACCCTATTGCCAACCCTTTTAACCCCTCTCCAAGT
GCTTCAGAGTGACTCAGCTCCCACACAAACTCTATGCCCCAGATGACGCG
CTGCTGTCACGGGCAGTGGAGCTTATAGGGAAAGGCAGAGAACCCACTGT
TATACAGCAGCACCTGGAGCAAATTAGGTCTTTGCATACCCCTCTTCACA
CTCCTTTGAAAAACTGAGGCTTAAGTCTTGCTATAACTCTAAGAGCTTCC
CCTTTGATGCATAGTAGCCCGTTTCCTGATGGCTTGGAATCAATCATCTT
TCTACAGTTTTAAAACTCAAATATTTGTCCCAGGCATGGTTTCACTGCGC
GGCATTGCAAAGGGCATCCTCTCTTCCCTCGAAATGAGATGTTCCACTTT
TACACAGGTACCGAACCAACAAAACTTCAAAGAGTTTCATCGGGGGCAGA
GCTGCTGGTCCTGCTGCTGGAGAGGCCAGCTCTCACTCATCTGAGGCCAG
CTCTCTCTCATCTCCGCTGCACAAATGACTGACTTAACGGAGAGATTTCT
TACCCCCCAGCTTGGCTAGCACCCATTTCACCAACTCACTTTGCCAGCTC
ACTCTTCCCACGGCATCTCCTCAGGCACAGCAGAGACATTCGACAGTGCC
AGGCTCAGCACTGCTGATCCCCGGGCACCGCTTGATGGCCAGATGAGGGA
GGGCACCCCCACAGGGATGAACAGGAGCCAGCCCCCAAGCATTGCGAAAG
TCGCTTGGTTCTGCCGGACACTGGGAGACAGGGCCTCCGCAGCAGCTAAG
GCCTCCAGCAGAGGTGAGATTGAGTACAGACTGCACTGCTGA
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Coding sequence (CDS) from alignment at C-australica_Contig_98:60415..62356+

>mRNA_C-australica_Contig_98.19.1 ID=mRNA_C-australica_Contig_98.19.1|Name=mRNA_C-australica_Contig_98.19.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=864bp|location=Sequence derived from alignment at C-australica_Contig_98:60415..62356+ (Chrysoparadoxa australica CS_1217)
ATGGAGGCTGAGAAACTGCACGGGGACCAAGCTGCACTGCTGAGGGGCAC
CGAAGGGTGCACAGCCTTGCACCTAGCTGTTGCAAGCGAAAGCCCTGCAG
CAGTCCGGAAGCTGATGCTTAGGTGGCGGCACCACTTCACAAGGGAGTTG
GGGAGAAAGCTGGCAGAGCTGGACGTTCGGCGGGACTCCTTTTTGAGCGA
GCTGTCTAGCAAAAGCATCGATGGCAACGACAAGGCATATGCGGTGTCAC
ACCAGGTCAGGAGGTTCCACAGCTGGCTTCTTGAAGAGAGACTTAGGCTC
CTTAGATGTGTGGAACTGAGGTGTGAGGAATGCTGGAGGAGGGTACTGTC
AGCAAAAGACGACCACGGCCGAACTGCCCTGCACTGGGCAGCATCCTTGA
AGGGCAGCGAGGAGGTGATGGAGGCTCTGCTCCGTACCGGGAGGGCCAAC
CTCGGTCACGATGAAGCACCTCATCAGTCAGCCATGGATGACGCGCTGCT
GTCACGGGCAGTGGAGCTTATAGGGAAAGGCAGAGAACCCACTGTTATAC
AGCAGCACCTGGAGCAAATTAGGCATGGTTTCACTGCGCGGCATTGCAAA
GGGCATCCTCTCTTCCCTCGAAATGAGATGTTCCACTTTTACACAGGCAC
AGCAGAGACATTCGACAGTGCCAGGCTCAGCACTGCTGATCCCCGGGCAC
CGCTTGATGGCCAGATGAGGGAGGGCACCCCCACAGGGATGAACAGGAGC
CAGCCCCCAAGCATTGCGAAAGTCGCTTGGTTCTGCCGGACACTGGGAGA
CAGGGCCTCCGCAGCAGCTAAGGCCTCCAGCAGAGGTGAGATTGAGTACA
GACTGCACTGCTGA
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