mRNA_C-australica_Contig_9794.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_9794.1.1
Unique NamemRNA_C-australica_Contig_9794.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
[Close]
BLAST of mRNA_C-australica_Contig_9794.1.1 vs. uniprot
Match: A0A840UB29_9GAMM (Shikimate kinase n=1 Tax=Marinobacter oulmenensis TaxID=643747 RepID=A0A840UB29_9GAMM)

HSP 1 Score: 181 bits (459), Expect = 2.650e-56
Identity = 88/97 (90.72%), Postives = 93/97 (95.88%), Query Frame = 1 
Query:    1 MSLPKRVVLVGPMGAGKSTIGRMLAKELGYRFLDSDRIIEERCGANIPWIFDVEGEDGFRLRETAMLDELSHEDRTVLATGGGAVMRQENHPILKRD 291
            MSLPKRVVLVGPMGAGKSTIGRMLA+ELGYRFLDSDRIIEERCGANIPWIFDVEGE+GFRLRETAMLDELS ED+TVLATGGGAV R ENH +L+RD
Sbjct:    1 MSLPKRVVLVGPMGAGKSTIGRMLARELGYRFLDSDRIIEERCGANIPWIFDVEGEEGFRLRETAMLDELSGEDKTVLATGGGAVTRPENHELLRRD 97
[Close]
BLAST of mRNA_C-australica_Contig_9794.1.1 vs. uniprot
Match: A0A366GNR5_9GAMM (Shikimate kinase n=6 Tax=Marinobacter TaxID=2742 RepID=A0A366GNR5_9GAMM)

HSP 1 Score: 179 bits (455), Expect = 8.360e-56
Identity = 86/97 (88.66%), Postives = 93/97 (95.88%), Query Frame = 1 
Query:    1 MSLPKRVVLVGPMGAGKSTIGRMLAKELGYRFLDSDRIIEERCGANIPWIFDVEGEDGFRLRETAMLDELSHEDRTVLATGGGAVMRQENHPILKRD 291
            MSLPKR+VLVGPMGAGKSTIGRMLA+ELGYRFLD+DRIIEERCGANIPWIFDVEGEDGFR RETAML++LS E +TVLATGGGAVMR ENHP+LKRD
Sbjct:    1 MSLPKRIVLVGPMGAGKSTIGRMLARELGYRFLDTDRIIEERCGANIPWIFDVEGEDGFRQRETAMLEQLSAEPQTVLATGGGAVMRPENHPLLKRD 97
[Close]
BLAST of mRNA_C-australica_Contig_9794.1.1 vs. uniprot
Match: UPI001245398F (shikimate kinase AroK n=1 Tax=Marinobacter halotolerans TaxID=1569211 RepID=UPI001245398F)

HSP 1 Score: 178 bits (452), Expect = 2.390e-55
Identity = 88/97 (90.72%), Postives = 91/97 (93.81%), Query Frame = 1 
Query:    1 MSLPKRVVLVGPMGAGKSTIGRMLAKELGYRFLDSDRIIEERCGANIPWIFDVEGEDGFRLRETAMLDELSHEDRTVLATGGGAVMRQENHPILKRD 291
            MSLPKRVVLVGPMGAGKSTIGRMLAKELGYRFLDSDRIIEERCGANIPWIFDVEGEDGFR RETAML ELS + +TVLATGGGAVMR+ENH  LKRD
Sbjct:    1 MSLPKRVVLVGPMGAGKSTIGRMLAKELGYRFLDSDRIIEERCGANIPWIFDVEGEDGFRQRETAMLSELSEQPQTVLATGGGAVMREENHAHLKRD 97
[Close]
BLAST of mRNA_C-australica_Contig_9794.1.1 vs. uniprot
Match: A0A4Z1C5K2_9GAMM (Shikimate kinase n=1 Tax=Marinobacter confluentis TaxID=1697557 RepID=A0A4Z1C5K2_9GAMM)

HSP 1 Score: 177 bits (450), Expect = 4.810e-55
Identity = 86/97 (88.66%), Postives = 92/97 (94.85%), Query Frame = 1 
Query:    1 MSLPKRVVLVGPMGAGKSTIGRMLAKELGYRFLDSDRIIEERCGANIPWIFDVEGEDGFRLRETAMLDELSHEDRTVLATGGGAVMRQENHPILKRD 291
            MSLPKRVVLVGPMGAGKSTIGRMLA+ELGYRF+DSDRIIEERCGANIPWIFDVEGEDGFR RETAML+EL+ E  +VLATGGGAVMR+ENHP LKRD
Sbjct:    1 MSLPKRVVLVGPMGAGKSTIGRMLARELGYRFMDSDRIIEERCGANIPWIFDVEGEDGFRQRETAMLNELADEPESVLATGGGAVMREENHPHLKRD 97
[Close]
BLAST of mRNA_C-australica_Contig_9794.1.1 vs. uniprot
Match: A0A285Q9B9_9GAMM (Shikimate kinase n=1 Tax=Marinobacter sp. LV10R510-11A TaxID=1415568 RepID=A0A285Q9B9_9GAMM)

HSP 1 Score: 177 bits (450), Expect = 4.810e-55
Identity = 86/97 (88.66%), Postives = 91/97 (93.81%), Query Frame = 1 
Query:    1 MSLPKRVVLVGPMGAGKSTIGRMLAKELGYRFLDSDRIIEERCGANIPWIFDVEGEDGFRLRETAMLDELSHEDRTVLATGGGAVMRQENHPILKRD 291
            MSLPKRVVL+GPMGAGKSTIGRMLA+ELGYRFLDSDRIIE RCGANIPWIFDVEGE GFRLRETAMLDELS E  +VLATGGGAVMR ENHP+LK+D
Sbjct:    1 MSLPKRVVLIGPMGAGKSTIGRMLARELGYRFLDSDRIIEARCGANIPWIFDVEGEGGFRLRETAMLDELSAEPESVLATGGGAVMRAENHPLLKKD 97
[Close]
BLAST of mRNA_C-australica_Contig_9794.1.1 vs. uniprot
Match: A0A072MWD0_9GAMM (Shikimate kinase n=2 Tax=Marinobacter TaxID=2742 RepID=A0A072MWD0_9GAMM)

HSP 1 Score: 177 bits (449), Expect = 6.830e-55
Identity = 86/97 (88.66%), Postives = 92/97 (94.85%), Query Frame = 1 
Query:    1 MSLPKRVVLVGPMGAGKSTIGRMLAKELGYRFLDSDRIIEERCGANIPWIFDVEGEDGFRLRETAMLDELSHEDRTVLATGGGAVMRQENHPILKRD 291
            M LPKRVVLVGPMGAGKSTIGRMLAKELGYRFLDSDRIIE+RCGANIPWIFDVEGE+GFR RETAMLDELS E+RTVLATGGGAVM+ ENH +LK+D
Sbjct:    1 MPLPKRVVLVGPMGAGKSTIGRMLAKELGYRFLDSDRIIEDRCGANIPWIFDVEGEEGFRQRETAMLDELSLEERTVLATGGGAVMKPENHSLLKKD 97
[Close]
BLAST of mRNA_C-australica_Contig_9794.1.1 vs. uniprot
Match: A0A1V2DVG2_9GAMM (Shikimate kinase n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1V2DVG2_9GAMM)

HSP 1 Score: 177 bits (448), Expect = 9.700e-55
Identity = 86/97 (88.66%), Postives = 92/97 (94.85%), Query Frame = 1 
Query:    1 MSLPKRVVLVGPMGAGKSTIGRMLAKELGYRFLDSDRIIEERCGANIPWIFDVEGEDGFRLRETAMLDELSHEDRTVLATGGGAVMRQENHPILKRD 291
            MSLPKR+VLVGPMGAGKSTIGRMLA+ELGYRFLD+DRIIEERCGANIPWIFDVEGEDGFR RETAML ELS E RTVLATGGGAVMR+EN P+LK+D
Sbjct:    1 MSLPKRIVLVGPMGAGKSTIGRMLARELGYRFLDTDRIIEERCGANIPWIFDVEGEDGFRQRETAMLRELSQEPRTVLATGGGAVMREENLPLLKQD 97
[Close]
BLAST of mRNA_C-australica_Contig_9794.1.1 vs. uniprot
Match: A0A1D9GMF6_9GAMM (Shikimate kinase n=3 Tax=Marinobacter TaxID=2742 RepID=A0A1D9GMF6_9GAMM)

HSP 1 Score: 177 bits (448), Expect = 9.700e-55
Identity = 87/97 (89.69%), Postives = 91/97 (93.81%), Query Frame = 1 
Query:    1 MSLPKRVVLVGPMGAGKSTIGRMLAKELGYRFLDSDRIIEERCGANIPWIFDVEGEDGFRLRETAMLDELSHEDRTVLATGGGAVMRQENHPILKRD 291
            MSLPKRVVLVGPMGAGKSTIGRMLAKELGYRFLDSDRIIE+RCGANIPWIFDVEGE+GFR RETAML ELS E  TVLATGGGAVMRQENH +LK+D
Sbjct:    1 MSLPKRVVLVGPMGAGKSTIGRMLAKELGYRFLDSDRIIEDRCGANIPWIFDVEGEEGFRQRETAMLKELSSEPNTVLATGGGAVMRQENHLLLKKD 97
[Close]
BLAST of mRNA_C-australica_Contig_9794.1.1 vs. uniprot
Match: W5YJ93_9GAMM (Shikimate kinase n=32 Tax=Gammaproteobacteria TaxID=1236 RepID=W5YJ93_9GAMM)

HSP 1 Score: 176 bits (445), Expect = 2.770e-54
Identity = 88/97 (90.72%), Postives = 90/97 (92.78%), Query Frame = 1 
Query:    1 MSLPKRVVLVGPMGAGKSTIGRMLAKELGYRFLDSDRIIEERCGANIPWIFDVEGEDGFRLRETAMLDELSHEDRTVLATGGGAVMRQENHPILKRD 291
            MSLPKRVVLVGPMGAGKSTIGRMLAKELGYRFLDSDRIIEERCGANIPWIFDVEGEDGFRLRETAML+ELS    TVLATGGGAVMR EN P LK+D
Sbjct:    1 MSLPKRVVLVGPMGAGKSTIGRMLAKELGYRFLDSDRIIEERCGANIPWIFDVEGEDGFRLRETAMLEELSLLPDTVLATGGGAVMRPENRPFLKQD 97
[Close]
BLAST of mRNA_C-australica_Contig_9794.1.1 vs. uniprot
Match: UPI00193A89B0 (shikimate kinase AroK n=1 Tax=Marinobacter sediminum TaxID=256323 RepID=UPI00193A89B0)

HSP 1 Score: 176 bits (445), Expect = 2.770e-54
Identity = 88/97 (90.72%), Postives = 90/97 (92.78%), Query Frame = 1 
Query:    1 MSLPKRVVLVGPMGAGKSTIGRMLAKELGYRFLDSDRIIEERCGANIPWIFDVEGEDGFRLRETAMLDELSHEDRTVLATGGGAVMRQENHPILKRD 291
            MSLPKRVVLVGPMGAGKSTIGRMLAKELGYRFLDSDRIIEERCGANIPWIFDVEGEDGFRLRETAML+ELS    TVLATGGGAVMR EN P LK+D
Sbjct:    1 MSLPKRVVLVGPMGAGKSTIGRMLAKELGYRFLDSDRIIEERCGANIPWIFDVEGEDGFRLRETAMLEELSLLPDTVLATGGGAVMRPENRPFLKQD 97
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9794.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A840UB29_9GAMM2.650e-5690.72Shikimate kinase n=1 Tax=Marinobacter oulmenensis ... [more]
A0A366GNR5_9GAMM8.360e-5688.66Shikimate kinase n=6 Tax=Marinobacter TaxID=2742 R... [more]
UPI001245398F2.390e-5590.72shikimate kinase AroK n=1 Tax=Marinobacter halotol... [more]
A0A4Z1C5K2_9GAMM4.810e-5588.66Shikimate kinase n=1 Tax=Marinobacter confluentis ... [more]
A0A285Q9B9_9GAMM4.810e-5588.66Shikimate kinase n=1 Tax=Marinobacter sp. LV10R510... [more]
A0A072MWD0_9GAMM6.830e-5588.66Shikimate kinase n=2 Tax=Marinobacter TaxID=2742 R... [more]
A0A1V2DVG2_9GAMM9.700e-5588.66Shikimate kinase n=2 Tax=Gammaproteobacteria TaxID... [more]
A0A1D9GMF6_9GAMM9.700e-5589.69Shikimate kinase n=3 Tax=Marinobacter TaxID=2742 R... [more]
W5YJ93_9GAMM2.770e-5490.72Shikimate kinase n=32 Tax=Gammaproteobacteria TaxI... [more]
UPI00193A89B02.770e-5490.72shikimate kinase AroK n=1 Tax=Marinobacter sedimin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9794contigC-australica_Contig_9794:1..291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog225937.HP15_479
Preferred namearoK
PFAMsSKI
Model size291
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00002,RC00078
KEGG koko:K00891
KEGG ReactionR02412
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
Hectar predicted targeting categoryother localisation
GOsGO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615
Exons1
Evalue4.81e-64
EggNOG OGsCOG0703@1|root,COG0703@2|Bacteria,1MUFJ@1224|Proteobacteria,1RPF6@1236|Gammaproteobacteria,467A5@72275|Alteromonadaceae
EC2.7.1.71
DescriptionCatalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
Cds size291
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588845.4018698-CDS-C-australica_Contig_9794:0..2911682588845.4018698-CDS-C-australica_Contig_9794:0..291Chrysoparadoxa australica CS_1217CDSC-australica_Contig_9794 1..291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9794.1.1prot_C-australica_Contig_9794.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_9794 1..291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_9794.1.1

>prot_C-australica_Contig_9794.1.1 ID=prot_C-australica_Contig_9794.1.1|Name=mRNA_C-australica_Contig_9794.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=97bp
MSLPKRVVLVGPMGAGKSTIGRMLAKELGYRFLDSDRIIEERCGANIPWI
FDVEGEDGFRLRETAMLDELSHEDRTVLATGGGAVMRQENHPILKRD
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mRNA from alignment at C-australica_Contig_9794:1..291-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9794.1.1 ID=mRNA_C-australica_Contig_9794.1.1|Name=mRNA_C-australica_Contig_9794.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=291bp|location=Sequence derived from alignment at C-australica_Contig_9794:1..291- (Chrysoparadoxa australica CS_1217)
ATGTCTTTGCCGAAACGCGTTGTCCTGGTTGGCCCCATGGGAGCAGGGAA
AAGCACGATTGGCCGGATGCTCGCCAAAGAGCTCGGCTATCGTTTTCTTG
ATTCTGATCGCATCATTGAAGAGCGGTGCGGGGCTAACATTCCGTGGATT
TTTGATGTTGAGGGCGAGGATGGATTCCGTTTGCGGGAAACAGCCATGCT
GGACGAGTTGTCCCACGAGGACCGAACCGTGCTGGCTACTGGTGGCGGAG
CTGTGATGCGCCAGGAAAACCACCCGATTCTCAAGAGAGAT
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Coding sequence (CDS) from alignment at C-australica_Contig_9794:1..291-

>mRNA_C-australica_Contig_9794.1.1 ID=mRNA_C-australica_Contig_9794.1.1|Name=mRNA_C-australica_Contig_9794.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=291bp|location=Sequence derived from alignment at C-australica_Contig_9794:1..291- (Chrysoparadoxa australica CS_1217)
ATGTCTTTGCCGAAACGCGTTGTCCTGGTTGGCCCCATGGGAGCAGGGAA
AAGCACGATTGGCCGGATGCTCGCCAAAGAGCTCGGCTATCGTTTTCTTG
ATTCTGATCGCATCATTGAAGAGCGGTGCGGGGCTAACATTCCGTGGATT
TTTGATGTTGAGGGCGAGGATGGATTCCGTTTGCGGGAAACAGCCATGCT
GGACGAGTTGTCCCACGAGGACCGAACCGTGCTGGCTACTGGTGGCGGAG
CTGTGATGCGCCAGGAAAACCACCCGATTCTCAAGAGAGAT
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