mRNA_C-australica_Contig_9792.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_9792.2.1
Unique NamemRNA_C-australica_Contig_9792.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_9792.2.1 vs. uniprot
Match: A0A2D4SCM8_9GAMM (Fatty acid oxidation complex subunit alpha FadJ n=1 Tax=Salinisphaeraceae bacterium TaxID=2026789 RepID=A0A2D4SCM8_9GAMM)

HSP 1 Score: 71.6 bits (174), Expect = 3.020e-13
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 MASKQSTFDIEQRDDGVAVVRMDVPGEAHNVLKAEFADEFEALFERLRTDNTIK 162
            M  KQ+ F++E RDD VAVVRM+VPGEAHNVLKAEF DEFE LF +L+ +  ++
Sbjct:    1 MPKKQTAFELEIRDDNVAVVRMNVPGEAHNVLKAEFTDEFEDLFRQLKGNGQLQ 54
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BLAST of mRNA_C-australica_Contig_9792.2.1 vs. uniprot
Match: A0A258C3A2_9ALTE (Fatty acid oxidation complex subunit alpha FadJ (Fragment) n=1 Tax=Alishewanella sp. 32-51-5 TaxID=1970315 RepID=A0A258C3A2_9ALTE)

HSP 1 Score: 60.5 bits (145), Expect = 7.020e-10
Identity = 28/54 (51.85%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 MASKQSTFDIEQRDDGVAVVRMDVPGEAHNVLKAEFADEFEALFERLRTDNTIK 162
            M    S+F +  RDD VAV+ MD+PGE+ NVLKA FADE +A+ ++L  D+T+K
Sbjct:    1 MTETVSSFSLNIRDDKVAVITMDIPGESMNVLKASFADEIDAMLKQLANDSTLK 54
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BLAST of mRNA_C-australica_Contig_9792.2.1 vs. uniprot
Match: A0A3L8Q213_9GAMM (Fatty acid oxidation complex subunit alpha FadJ n=2 Tax=Parashewanella TaxID=2547964 RepID=A0A3L8Q213_9GAMM)

HSP 1 Score: 61.6 bits (148), Expect = 1.020e-9
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   13 QSTFDIEQRDDGVAVVRMDVPGEAHNVLKAEFADEFEALFERLRTDNTIK 162
            + TF++E+RDDG+AVV MDVPG+  N L+AEFA+E   L   ++ DN+IK
Sbjct:    2 ERTFNLERRDDGIAVVTMDVPGDTMNTLRAEFANEISELLSEIKRDNSIK 51
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BLAST of mRNA_C-australica_Contig_9792.2.1 vs. uniprot
Match: UPI00109F6413 (fatty acid oxidation complex subunit alpha FadJ n=1 Tax=Ningiella ruwaisensis TaxID=2364274 RepID=UPI00109F6413)

HSP 1 Score: 61.2 bits (147), Expect = 1.390e-9
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   16 STFDIEQRDDGVAVVRMDVPGEAHNVLKAEFADEFEALFERLRTDNTIK 162
            S F +E+RDDG+A++ MDVPGE+ N LKA+F DE  A+ + ++ DN IK
Sbjct:    2 SAFKLEKRDDGIAILTMDVPGESMNTLKADFGDEISAILDDIQADNAIK 50
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BLAST of mRNA_C-australica_Contig_9792.2.1 vs. uniprot
Match: A0A516HDE4_9GAMM (Fatty acid oxidation complex subunit alpha FadJ n=2 Tax=Thalassotalea TaxID=1518149 RepID=A0A516HDE4_9GAMM)

HSP 1 Score: 61.2 bits (147), Expect = 1.390e-9
Identity = 26/49 (53.06%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:   16 STFDIEQRDDGVAVVRMDVPGEAHNVLKAEFADEFEALFERLRTDNTIK 162
            STF +E++D+G+A ++MDV GE  N L+AEFADEF  + E++++DN+IK
Sbjct:    5 STFTLERQDNGIAFLKMDVVGETMNTLRAEFADEFSTVLEKIKSDNSIK 53
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BLAST of mRNA_C-australica_Contig_9792.2.1 vs. uniprot
Match: A0A3M1TPM8_9BACT (Fatty acid oxidation complex subunit alpha FadJ n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1TPM8_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 1.390e-9
Identity = 32/52 (61.54%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    7 SKQSTFDIEQRDDGVAVVRMDVPGEAHNVLKAEFADEFEALFERLRTDNTIK 162
            S   TF +E RDDGVAVV MDVPGE  N LKA FADEFE LF  L  D  ++
Sbjct:    2 SDSKTFRVETRDDGVAVVWMDVPGEPVNTLKASFADEFEELFAGLAGDANLR 53
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BLAST of mRNA_C-australica_Contig_9792.2.1 vs. uniprot
Match: I8UEH0_9ALTE (Fatty acid oxidation complex subunit alpha n=5 Tax=Alishewanella TaxID=111142 RepID=I8UEH0_9ALTE)

HSP 1 Score: 60.5 bits (145), Expect = 2.600e-9
Identity = 28/54 (51.85%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 MASKQSTFDIEQRDDGVAVVRMDVPGEAHNVLKAEFADEFEALFERLRTDNTIK 162
            M    S+F +  RDD VAV+ MD+PGE+ NVLKA FADE +A+ ++L  D+T+K
Sbjct:    1 MTDTVSSFSLSIRDDKVAVITMDIPGESMNVLKASFADEIDAMLKQLANDSTLK 54
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BLAST of mRNA_C-australica_Contig_9792.2.1 vs. uniprot
Match: A0A1S2TY10_9GAMM (Fatty acid oxidation complex subunit alpha n=69 Tax=Shewanella TaxID=22 RepID=A0A1S2TY10_9GAMM)

HSP 1 Score: 60.5 bits (145), Expect = 2.600e-9
Identity = 26/54 (48.15%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 MASKQSTFDIEQRDDGVAVVRMDVPGEAHNVLKAEFADEFEALFERLRTDNTIK 162
            M +   +F + +RDDG+A++ MDVPGE+ N LKAEF  E  AL   ++TD++IK
Sbjct:    1 MENSNKSFSLSRRDDGIAILSMDVPGESMNTLKAEFGPEISALLSEIKTDSSIK 54
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BLAST of mRNA_C-australica_Contig_9792.2.1 vs. uniprot
Match: UPI000E2064FA (fatty acid oxidation complex subunit alpha FadJ n=1 Tax=Gallaecimonas mangrovi TaxID=2291597 RepID=UPI000E2064FA)

HSP 1 Score: 60.5 bits (145), Expect = 2.600e-9
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   19 TFDIEQRDDGVAVVRMDVPGEAHNVLKAEFADEFEALFERLRTDNTIK 162
            TF +E+R+DG+ ++RMDVPGE  N LKA FADE  A+ E +R D  IK
Sbjct:    5 TFSLERREDGIGIIRMDVPGETMNTLKAAFADEIRAILEDVRHDPAIK 52
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BLAST of mRNA_C-australica_Contig_9792.2.1 vs. uniprot
Match: A0A350QKX3_9BACT (3-hydroxyacyl-CoA dehydrogenase (Fragment) n=1 Tax=Candidatus Azambacteria bacterium TaxID=2053511 RepID=A0A350QKX3_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 3.510e-9
Identity = 26/51 (50.98%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   10 KQSTFDIEQRDDGVAVVRMDVPGEAHNVLKAEFADEFEALFERLRTDNTIK 162
            +Q++F +  RDD VAV+ MD+PGE+ NVLKA FADE +A+ + L++D+++K
Sbjct:    5 QQNSFSLALRDDHVAVITMDIPGESMNVLKASFADEIDAILKTLQSDSSVK 55
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9792.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4SCM8_9GAMM3.020e-1362.96Fatty acid oxidation complex subunit alpha FadJ n=... [more]
A0A258C3A2_9ALTE7.020e-1051.85Fatty acid oxidation complex subunit alpha FadJ (F... [more]
A0A3L8Q213_9GAMM1.020e-954.00Fatty acid oxidation complex subunit alpha FadJ n=... [more]
UPI00109F64131.390e-953.06fatty acid oxidation complex subunit alpha FadJ n=... [more]
A0A516HDE4_9GAMM1.390e-953.06Fatty acid oxidation complex subunit alpha FadJ n=... [more]
A0A3M1TPM8_9BACT1.390e-961.54Fatty acid oxidation complex subunit alpha FadJ n=... [more]
I8UEH0_9ALTE2.600e-951.85Fatty acid oxidation complex subunit alpha n=5 Tax... [more]
A0A1S2TY10_9GAMM2.600e-948.15Fatty acid oxidation complex subunit alpha n=69 Ta... [more]
UPI000E2064FA2.600e-956.25fatty acid oxidation complex subunit alpha FadJ n=... [more]
A0A350QKX3_9BACT3.510e-950.983-hydroxyacyl-CoA dehydrogenase (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9792contigC-australica_Contig_9792:691..852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1129374.AJE_02761
Preferred namefadJ
PFAMs3HCDH,3HCDH_N,ECH_1
Model size162
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00029,RC00099,RC00117,RC00241,RC00525,RC00831,RC00834,RC00896,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115
KEGG koko:K01782
KEGG ReactionR01975,R03026,R03045,R03276,R04137,R04170,R04203,R04204,R04224,R04737,R04738,R04739,R04740,R04741,R04744,R04745,R04746,R04748,R04749,R05066,R05305,R06411,R06412,R06941,R06942,R07935,R07951,R08093,R08094
KEGG Pathwayko00071,ko00280,ko00281,ko00310,ko00362,ko00380,ko00410,ko00640,ko00650,ko00903,ko00930,ko01040,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00071,map00280,map00281,map00310,map00362,map00380,map00410,map00640,map00650,map00903,map00930,map01040,map01100,map01110,map01120,map01130,map01200,map01212
KEGG ModuleM00032,M00087
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0003857,GO:0004300,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0008692,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016854,GO:0016856,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0034440,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0055114,GO:0071704,GO:0072329,GO:1901575
Exons1
Evalue4.26e-10
EggNOG OGsCOG1024@1|root,COG1250@1|root,COG1024@2|Bacteria,COG1250@2|Bacteria,1MU9P@1224|Proteobacteria,1RMZ8@1236|Gammaproteobacteria,465IT@72275|Alteromonadaceae
EC1.1.1.35,4.2.1.17,5.1.2.3
DescriptionCatalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities
Cds size162
COG categoryI
BiGG ReactioniECABU_c1320.ECABU_c26730,iETEC_1333.ETEC_2476,iEcE24377_1341.EcE24377A_2637,ic_1306.c2886
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588845.3747118-CDS-C-australica_Contig_9792:690..8521682588845.3747118-CDS-C-australica_Contig_9792:690..852Chrysoparadoxa australica CS_1217CDSC-australica_Contig_9792 691..852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9792.2.1prot_C-australica_Contig_9792.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_9792 691..852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_9792.2.1

>prot_C-australica_Contig_9792.2.1 ID=prot_C-australica_Contig_9792.2.1|Name=mRNA_C-australica_Contig_9792.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=54bp
MASKQSTFDIEQRDDGVAVVRMDVPGEAHNVLKAEFADEFEALFERLRTD
NTIK
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mRNA from alignment at C-australica_Contig_9792:691..852+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9792.2.1 ID=mRNA_C-australica_Contig_9792.2.1|Name=mRNA_C-australica_Contig_9792.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=162bp|location=Sequence derived from alignment at C-australica_Contig_9792:691..852+ (Chrysoparadoxa australica CS_1217)
ATGGCAAGCAAACAATCGACGTTCGACATCGAGCAGCGCGACGACGGCGT
GGCCGTGGTGCGCATGGACGTGCCCGGCGAGGCGCACAACGTGCTCAAGG
CGGAATTCGCCGACGAGTTCGAGGCGCTGTTCGAACGGCTGCGCACGGAC
AACACGATCAAG
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Coding sequence (CDS) from alignment at C-australica_Contig_9792:691..852+

>mRNA_C-australica_Contig_9792.2.1 ID=mRNA_C-australica_Contig_9792.2.1|Name=mRNA_C-australica_Contig_9792.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=162bp|location=Sequence derived from alignment at C-australica_Contig_9792:691..852+ (Chrysoparadoxa australica CS_1217)
ATGGCAAGCAAACAATCGACGTTCGACATCGAGCAGCGCGACGACGGCGT
GGCCGTGGTGCGCATGGACGTGCCCGGCGAGGCGCACAACGTGCTCAAGG
CGGAATTCGCCGACGAGTTCGAGGCGCTGTTCGAACGGCTGCGCACGGAC
AACACGATCAAG
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