mRNA_C-australica_Contig_977.4.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_977.4.1
Unique NamemRNA_C-australica_Contig_977.4.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_977.4.1 vs. uniprot
Match: A0A836CN64_9STRA (KRR1 small subunit processome component n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN64_9STRA)

HSP 1 Score: 444 bits (1143), Expect = 1.800e-146
Identity = 217/282 (76.95%), Postives = 248/282 (87.94%), Query Frame = 1
Query:   28 KNHNKYRRAKPWDHAGINHWEQEKWTGDEMCGTLLEESSFATLFPKYREKYLREVWPIVTRALEKVGISCELDLVEGSMSVCTTRKTRDPYIIVKARDLIKLLARSIPAAQALRILEDDIQCDIIKIGGMVRSKERFVKRRQRLLGPDGATLKALELLSGCYILVQGNTVACMGSYAGLKSARKVVVECMQNVHPVYNIKTLMIKKELEKDPALAGEDWSRFLPHFKKKNVARKKPHKVNKKKEYTPFPPPQSESKVDKQLESGEYFLNDKQRKVKAQAQRR 873
            KN+ KYRR KPWD+  I+HW Q +W  ++M G LLEESSFATLFPKYREKYLREVWP+VT+ALEK GI CELDLVEGSM+V T+R+TRDPY +VKARD++KLLARSIPAAQALR LED +  DIIKIGGMVR+KERFVKRRQRL+GPDGATLKALELL+GCYILVQGNTVACMGSYAGLK ARKV+V+CM N+HPVYNIKTLMI++EL KDPALAGEDWSRFLP F K+NV RKKP  V +K+ YTPFPP Q  SKVD QLESGEYFLN+ QRK +A+A++R
Sbjct:   17 KNNRKYRRDKPWDNESIDHWAQPEWKDEDMPGPLLEESSFATLFPKYREKYLREVWPMVTKALEKRGIGCELDLVEGSMTVRTSRRTRDPYAVVKARDVVKLLARSIPAAQALRALEDGVNADIIKIGGMVRNKERFVKRRQRLVGPDGATLKALELLTGCYILVQGNTVACMGSYAGLKQARKVIVDCMNNIHPVYNIKTLMIRRELAKDPALAGEDWSRFLPSFNKRNVPRKKPRSVREKRAYTPFPPAQLPSKVDLQLESGEYFLNEAQRKGRARAEKR 298          
BLAST of mRNA_C-australica_Contig_977.4.1 vs. uniprot
Match: A0A7S2DCQ6_9STRA (KRR-R motif-containing protein 1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DCQ6_9STRA)

HSP 1 Score: 414 bits (1065), Expect = 2.210e-134
Identity = 206/288 (71.53%), Postives = 242/288 (84.03%), Query Frame = 1
Query:   28 KNHNKYRRAKPWDHAGINHWEQEKWTGDEMCGTLLEESSFATLFPKYREKYLREVWPIVTRALEKVGISCELDLVEGSMSVCTTRKTRDPYIIVKARDLIKLLARSIPAAQALRILEDDIQCDIIKIGGMVRSKERFVKRRQRLLGPDGATLKALELLSGCYILVQGNTVACMGSYAGLKSARKVVVECMQNVHPVYNIKTLMIKKELEKDPALAGEDWSRFLPHFKKKNVARKKPHKVNK--KKEYTPFPPPQSESKVDKQLESGEYFLNDKQRKVKAQAQRRAAAA 885
            KNHNKYRR KPWD+  I+HW+ E W   +M G+LLEESSFATLFPKYREKYLREVWP+VTR L+K  I+CELDL+EGSM+V TTRKT DPYII+KARDLIKLLARSIP  QAL+ILEDD+ CD+IKIGGMV +KERFV+RRQR+LGPDGATLKALELL+ CY+LVQGNTV+ MG+  G+K  RKVV +CM N+HPVYNIK LMIK+EL KDPALAGE+W RFLP F KK V RKKP KV    K+ YTPFPP Q+ SKVD QLESGEYFL++ QRK + +++++A AA
Sbjct:    4 KNHNKYRRDKPWDNDEIDHWKLEDWNEGDMHGSLLEESSFATLFPKYREKYLREVWPLVTRTLDKQKIACELDLIEGSMTVKTTRKTNDPYIILKARDLIKLLARSIPVLQALKILEDDMHCDVIKIGGMVGNKERFVRRRQRILGPDGATLKALELLTECYVLVQGNTVSTMGTIKGIKQVRKVVEDCMNNIHPVYNIKILMIKRELAKDPALAGENWDRFLPKFAKKTVDRKKPFKVRDTAKRTYTPFPPAQTPSKVDLQLESGEYFLSETQRKARRRSEKQADAA 291          
BLAST of mRNA_C-australica_Contig_977.4.1 vs. uniprot
Match: A0A7S1UII9_9STRA (KRR1 small subunit processome component n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UII9_9STRA)

HSP 1 Score: 409 bits (1051), Expect = 2.700e-133
Identity = 200/288 (69.44%), Postives = 241/288 (83.68%), Query Frame = 1
Query:   37 NKYRRAKPWDHAGINHWEQEKWT-GDEMCGTLLEESSFATLFPKYREKYLREVWPIVTRALEKVGISCELDLVEGSMSVCTTRKTRDPYIIVKARDLIKLLARSIPAAQALRILEDDIQCDIIKIGGMVRSKERFVKRRQRLLGPDGATLKALELLSGCYILVQGNTVACMGSYAGLKSARKVVVECMQNVHPVYNIKTLMIKKELEKDPALAGEDWSRFLPHFKKKNVARKKPHKVNKK--KEYTPFPPPQSESKVDKQLESGEYFLNDKQRKVKAQAQRRAAAAEK 891
            NKYRRAKPWDH GI+HW+QE+W  GD   G LLEESSFATLFPKYREKYLREVWP+VTRAL+K GI CEL+L+EGSM+V TTRKT DPY I+KARD+IKLLARS+PA QAL+ LED++ CDIIKIGG+VR+K+RFVKRRQRL+GPDG+TLKALELL+GCY+LVQGNTV+ MG + G+K  RKVV++CM+N+HP+YNIKTLMIK+EL KDP LA + W RFLP F+K+NV R+KP KV     + YTPFPP Q  SKVD QLESGEYFL+ +Q++   Q ++   AA K
Sbjct:   16 NKYRRAKPWDHDGIDHWKQEEWNEGDMAGGPLLEESSFATLFPKYREKYLREVWPMVTRALQKAGIGCELNLIEGSMTVKTTRKTWDPYSILKARDVIKLLARSVPAPQALKALEDNVACDIIKIGGLVRNKDRFVKRRQRLVGPDGSTLKALELLTGCYVLVQGNTVSAMGPHKGIKQVRKVVIDCMENIHPIYNIKTLMIKRELAKDPTLANQSWDRFLPRFQKRNVKRRKPQKVRDTAARTYTPFPPAQQPSKVDMQLESGEYFLSAEQKESLKQLEKTQTAARK 303          
BLAST of mRNA_C-australica_Contig_977.4.1 vs. uniprot
Match: A0A7S3PWU0_9STRA (KRR1 small subunit processome component n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PWU0_9STRA)

HSP 1 Score: 406 bits (1043), Expect = 2.550e-131
Identity = 203/280 (72.50%), Postives = 233/280 (83.21%), Query Frame = 1
Query:   28 KNHNKYRRAKPWDHAGINHWEQEKWTGDE----MCGTLLEESSFATLFPKYREKYLREVWPIVTRALEKVGISCELDLVEGSMSVCTTRKTRDPYIIVKARDLIKLLARSIPAAQALRILEDDIQCDIIKIGGMVRSKERFVKRRQRLLGPDGATLKALELLSGCYILVQGNTVACMGSYAGLKSARKVVVECMQNVHPVYNIKTLMIKKELEKDPALAGEDWSRFLPHFKKKNVARKKPHKVNKKKEYTPFPPPQSESKVDKQLESGEYFLNDKQRKVK 855
            KNHNK+RR KPWD+  INHWE + W  +E      G+LLEESSFATLFPKYREKYLREVWPIVTRAL+K  I CEL+LVEGSM+V T++KT DPYII+KARDLIKLLARSIP  QAL++L DD   +IIKIGG+VR+KERFVKRRQRL+GPDGATLKALELL+ CYILVQGNTVA MGS  G+K AR+VV++CM N+HPVYNIK LMI KEL KDP LA EDWSRFLP FKKKNV RKKP     K  YTPFPP Q +SKVD+QL+SGEYFL+++QRK +
Sbjct:   13 KNHNKHRRDKPWDNDSINHWEIKSWKAEEGDALPGGSLLEESSFATLFPKYREKYLREVWPIVTRALDKYSIKCELNLVEGSMTVFTSKKTSDPYIILKARDLIKLLARSIPCQQALKVLNDDSHSEIIKIGGLVRNKERFVKRRQRLIGPDGATLKALELLTECYILVQGNTVAVMGSVKGIKRAREVVIDCMNNIHPVYNIKRLMIMKELAKDPKLATEDWSRFLPSFKKKNVQRKKPKNKRIKGSYTPFPPAQIQSKVDQQLDSGEYFLSERQRKAR 292          
BLAST of mRNA_C-australica_Contig_977.4.1 vs. uniprot
Match: A0A7R9YG52_9STRA (KRR1 small subunit processome component n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG52_9STRA)

HSP 1 Score: 404 bits (1037), Expect = 5.060e-131
Identity = 196/273 (71.79%), Postives = 234/273 (85.71%), Query Frame = 1
Query:   40 KYRRAKPWDHAGINHWEQEKWT-GDEMCGTLLEESSFATLFPKYREKYLREVWPIVTRALEKVGISCELDLVEGSMSVCTTRKTRDPYIIVKARDLIKLLARSIPAAQALRILEDDIQCDIIKIGGMVRSKERFVKRRQRLLGPDGATLKALELLSGCYILVQGNTVACMGSYAGLKSARKVVVECMQNVHPVYNIKTLMIKKELEKDPALAGEDWSRFLPHFKKKNVARKKPHKVNK--KKEYTPFPPPQSESKVDKQLESGEYFLNDKQRK 849
            +YRR KPWDH G++HW QE++  GD + G+LLEESSFATLFPKYREKYLREVWP+VTR L+K G+ CEL+L+EGSM+V TTRKT DPYII+KARD+IKLLARS+PAAQAL+ LEDD+  DI+KIGG+VR+KERFVKRRQRLLGPDG+TLKALELL+GCY+LVQGNTV+ MG Y GLK  RKVV++CMQN+HP+YNIKTLMIK+EL KDP LA + W RFLP FKK+NV RKKP  +    +++YTPFPP    SKVD QLESGEYFL+ +QRK
Sbjct:   12 QYRREKPWDHDGVDHWAQEEFKEGDMVGGSLLEESSFATLFPKYREKYLREVWPLVTRTLKKYGVGCELNLIEGSMTVKTTRKTWDPYIILKARDVIKLLARSVPAAQALKALEDDVASDIMKIGGLVRNKERFVKRRQRLLGPDGSTLKALELLTGCYVLVQGNTVSAMGPYKGLKQVRKVVMDCMQNIHPIYNIKTLMIKRELAKDPTLADQPWDRFLPKFKKRNVKRKKPKTIRDTTERKYTPFPPAPQPSKVDLQLESGEYFLSQEQRK 284          
BLAST of mRNA_C-australica_Contig_977.4.1 vs. uniprot
Match: B8C0X8_THAPS (KRR1 small subunit processome component n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0X8_THAPS)

HSP 1 Score: 405 bits (1041), Expect = 1.220e-130
Identity = 200/293 (68.26%), Postives = 241/293 (82.25%), Query Frame = 1
Query:   28 KNHNKYRRAKPWDHAGINHWEQEKW---TGDEMC--GTLLEESSFATLFPKYREKYLREVWPIVTRALEKVGISCELDLVEGSMSVCTTRKTRDPYIIVKARDLIKLLARSIPAAQALRILEDDIQCDIIKIGGMVRSKERFVKRRQRLLGPDGATLKALELLSGCYILVQGNTVACMGSYAGLKSARKVVVECMQNVHPVYNIKTLMIKKELEKDPALAGEDWSRFLPHFKKKNVARKKPHKVNKKKEYTPFPPPQSESKVDKQLESGEYFLNDKQRKVKAQAQRRAAAAEK 891
            KNHNKYRR KPWD+  I+HW    W   T ++    G LLEESSFATLFPKYREKYLREVWP+VT++L+K  ++CEL+LVEGSM+V TT+KT DPYII+KARDLIKLLARSIPA QAL+IL DD  C+IIKIGG+VR+KERFVKRRQRL+GPDGATLKALELL+ CYILVQGNTV+ MG+Y G+K  R V+++CM N+HPVYNIK LMI +ELE+DP L  E W RFLP FKKKNV R+KPH++ KKK YTPFPP Q  SK+D QLESGEYFL++++RK K   +++ A+ EK
Sbjct:   22 KNHNKYRRDKPWDNPSIDHWAITPWDEETNNDSLPGGRLLEESSFATLFPKYREKYLREVWPLVTKSLDKYKVACELNLVEGSMTVRTTKKTSDPYIILKARDLIKLLARSIPAPQALKILNDDHHCEIIKIGGLVRNKERFVKRRQRLIGPDGATLKALELLTQCYILVQGNTVSVMGTYKGIKQTRNVILDCMNNIHPVYNIKRLMIMRELERDPKLKEESWERFLPTFKKKNVKRRKPHQLKKKKSYTPFPPAQQPSKIDLQLESGEYFLSERERKAKKLGEKKIASMEK 314          
BLAST of mRNA_C-australica_Contig_977.4.1 vs. uniprot
Match: A0A024TMB1_9STRA (KRR1 small subunit processome component n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TMB1_9STRA)

HSP 1 Score: 403 bits (1035), Expect = 1.370e-130
Identity = 191/277 (68.95%), Postives = 233/277 (84.12%), Query Frame = 1
Query:   40 KYRRAKPWDHAGINHWEQEKWTGDEMCGTLLEESSFATLFPKYREKYLREVWPIVTRALEKVGISCELDLVEGSMSVCTTRKTRDPYIIVKARDLIKLLARSIPAAQALRILEDDIQCDIIKIGGMVRSKERFVKRRQRLLGPDGATLKALELLSGCYILVQGNTVACMGSYAGLKSARKVVVECMQNVHPVYNIKTLMIKKELEKDPALAGEDWSRFLPHFKKKNVARKKPHKVNKKKEYTPFPPPQSESKVDKQLESGEYFLNDKQRKVKAQAQR 870
            K+R+ KPWD   I HW+ E W  ++    +LEESSFATLFPKYREKYLREVWPIVT+AL+ V I+CEL+L+EGSM+V TTRKT DPYI++KARDLIKLLARSIP  QA++IL+D++QCDIIKIGG+VR+KERFVKRRQRL+GPDGATLKA+ELL+ CY+LVQGNTV+ MG Y GL+  RK+V +C QNVHP+YNIKTLMIK+EL KDP LAGE+W RFLP FKKKNV  KKPH V +KK YTPFPP  + SK+DK++ESGEYF+ + +RK   QA++
Sbjct:   11 KHRKDKPWDSDDIAHWKVESWKDEDNKSGMLEESSFATLFPKYREKYLREVWPIVTKALDSVKIACELNLIEGSMTVRTTRKTTDPYIVLKARDLIKLLARSIPVNQAVKILDDEVQCDIIKIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQGNTVSAMGPYGGLRHVRKIVEDCFQNVHPIYNIKTLMIKRELSKDPKLAGENWDRFLPVFKKKNVQTKKPHVVREKKAYTPFPPAPTPSKIDKEIESGEYFMKEHERKAMKQAKK 287          
BLAST of mRNA_C-australica_Contig_977.4.1 vs. uniprot
Match: A0A2V0NQC2_9CHLO (KRR-R motif-containing protein 1 n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NQC2_9CHLO)

HSP 1 Score: 405 bits (1041), Expect = 3.670e-130
Identity = 195/276 (70.65%), Postives = 236/276 (85.51%), Query Frame = 1
Query:   28 KNHNKYRRAKPWDHAGINHWEQEKWTGDEMCGTLLEESSFATLFPKYREKYLREVWPIVTRALEKVGISCELDLVEGSMSVCTTRKTRDPYIIVKARDLIKLLARSIPAAQALRILEDDIQCDIIKIGGMVRSKERFVKRRQRLLGPDGATLKALELLSGCYILVQGNTVACMGSYAGLKSARKVVVECMQNVHPVYNIKTLMIKKELEKDPALAGEDWSRFLPHFKKKNVARKKPHKVNKKKEYTPFPPPQSESKVDKQLESGEYFLNDKQRKVK 855
            K   K+++ KPWDH GI+HW  E +T D+  G LLEESSFATLFPKYREKYLREVWP VTRAL++VG++CEL+LVEGSM+V TTRKT DPY I+KARDLIKLLARS+PA QAL+IL+DD+QCDI+K  GMVRSKE+FVKRRQRL+GP+G+TLKALELL+GCYILVQGNTVA MG + GLK AR+V+ + M+N+HPVY++K LMIK+EL KDPA+A E+W RFLP FKK+NV R+KPH V +KK YTPFPPPQ  SKVD QLESGEYFL++  R+ +
Sbjct:   23 KQKGKHKKDKPWDHEGIDHWSIEPFTKDDNPGGLLEESSFATLFPKYREKYLREVWPAVTRALKEVGVACELNLVEGSMTVRTTRKTWDPYAIIKARDLIKLLARSVPAPQALKILQDDMQCDIVKTAGMVRSKEKFVKRRQRLIGPNGSTLKALELLTGCYILVQGNTVAVMGPFKGLKVARRVIEDAMRNIHPVYHVKALMIKRELAKDPAMAEENWDRFLPKFKKRNVPRRKPHVVREKKAYTPFPPPQQPSKVDLQLESGEYFLSEAAREAR 298          
BLAST of mRNA_C-australica_Contig_977.4.1 vs. uniprot
Match: A0A7S0GJJ8_9STRA (KRR-R motif-containing protein 1 n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GJJ8_9STRA)

HSP 1 Score: 403 bits (1035), Expect = 1.530e-129
Identity = 209/304 (68.75%), Postives = 243/304 (79.93%), Query Frame = 1
Query:   28 KNHNKYRRAKPWDHAGINHWE--QEKWTG--DEMCGT-LLEESSFATLFPKYREKYLREVWPIVTRALEKVGISCELDLVEGSMSVCTTRKTRDPYIIVKARDLIKLLARSIPAAQALRILEDDIQCDIIKIGGMVRSKERFVKRRQRLLGPDGATLKALELLSGCYILVQGNTVACMGSYAGLKSARKVVVECMQNVHPVYNIKTLMIKKELEKDPALAGEDWSRFLPHFKKKNVARKKPHKV-------NKKKEYTPFPPPQSESKVDKQLESGEYFLNDKQRKVKAQAQRRAAAAEKQRMK 903
            KNHNKYRR KPWD+  INHW+     W    D + G  LLEESSFATLFPKYRE YLRE+WPIVTR+LEK  I+CEL+LVEGSM+V TTRKT DPYI++KARDLIKLLARSIPA QAL+IL D+I  DIIKIGG+VRSKERFVKRRQRL+GPDGATLKALELL+GCYILVQGNTV+ MGSY G+K AR V++ECM+N+HPVYNIK LMI++EL KDP L  EDWSRFLP F KKNV RKKP +V         KK YTPFPP Q+ SK+DKQL+SGEYFL +++R+ K  A++   +  K R K
Sbjct:   25 KNHNKYRREKPWDNETINHWDPAHSVWNPETDVLPGAQLLEESSFATLFPKYRETYLREIWPIVTRSLEKHKIACELNLVEGSMTVLTTRKTSDPYIVLKARDLIKLLARSIPAGQALKILNDEINADIIKIGGIVRSKERFVKRRQRLIGPDGATLKALELLTGCYILVQGNTVSVMGSYKGIKQARSVILECMRNIHPVYNIKRLMIQRELAKDPKLQDEDWSRFLPTFGKKNVPRKKPRQVLQDAEKPKSKKSYTPFPPAQTPSKIDKQLDSGEYFLTERERQAKQLAEKATVSIVKSRAK 328          
BLAST of mRNA_C-australica_Contig_977.4.1 vs. uniprot
Match: A0A485KS03_9STRA (KRR1 small subunit processome component n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KS03_9STRA)

HSP 1 Score: 399 bits (1026), Expect = 4.420e-129
Identity = 190/287 (66.20%), Postives = 238/287 (82.93%), Query Frame = 1
Query:   28 KNHNKYRRAKPWDHAGINHWEQEKWTGDEMCGTLLEESSFATLFPKYREKYLREVWPIVTRALEKVGISCELDLVEGSMSVCTTRKTRDPYIIVKARDLIKLLARSIPAAQALRILEDDIQCDIIKIGGMVRSKERFVKRRQRLLGPDGATLKALELLSGCYILVQGNTVACMGSYAGLKSARKVVVECMQNVHPVYNIKTLMIKKELEKDPALAGEDWSRFLPHFKKKNVARKKPHKVNKKKEYTPFPPPQSESKVDKQLESGEYFLNDKQRKVKAQAQRRAAAAE 888
            K   ++R+ KPWD   + HW+ E W  D+    +LEESSFATLFPKYREKYLREVWPIVT+AL+ V + CEL+L+EGSM+V TTRKT DPY+I+KARDLIKLLARSIP  QA+++L+DD+QCDIIKIGG+VR+KERFVKRRQRL+GPDGATLKA+ELL+ CY+LVQGNTV+ MG YAGL+  R +V +C +NVHP+YNIKTLMIK+EL+KDP L GE+W RFLP FKKKNVA KKPH V +K+ YTPFPP    SK+DK++ESGEYF+ +++RK   +A++ AA A+
Sbjct:   15 KGKKQHRKDKPWDTDDVAHWKIESWKDDDNKSGMLEESSFATLFPKYREKYLREVWPIVTKALDNVKLVCELNLIEGSMTVRTTRKTSDPYVILKARDLIKLLARSIPVNQAIKVLDDDVQCDIIKIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQGNTVSAMGPYAGLRHVRSIVEDCFKNVHPIYNIKTLMIKRELQKDPKLQGENWDRFLPVFKKKNVATKKPHVVREKRVYTPFPPAPVPSKIDKEIESGEYFMKEQERKAMKKAEKAAANAD 301          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_977.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CN64_9STRA1.800e-14676.95KRR1 small subunit processome component n=1 Tax=Tr... [more]
A0A7S2DCQ6_9STRA2.210e-13471.53KRR-R motif-containing protein 1 n=1 Tax=Dictyocha... [more]
A0A7S1UII9_9STRA2.700e-13369.44KRR1 small subunit processome component n=1 Tax=Ph... [more]
A0A7S3PWU0_9STRA2.550e-13172.50KRR1 small subunit processome component n=1 Tax=Ch... [more]
A0A7R9YG52_9STRA5.060e-13171.79KRR1 small subunit processome component n=1 Tax=Pi... [more]
B8C0X8_THAPS1.220e-13068.26KRR1 small subunit processome component n=1 Tax=Th... [more]
A0A024TMB1_9STRA1.370e-13068.95KRR1 small subunit processome component n=2 Tax=Ap... [more]
A0A2V0NQC2_9CHLO3.670e-13070.65KRR-R motif-containing protein 1 n=1 Tax=Raphidoce... [more]
A0A7S0GJJ8_9STRA1.530e-12968.75KRR-R motif-containing protein 1 n=2 Tax=Proboscia... [more]
A0A485KS03_9STRA4.420e-12966.20KRR1 small subunit processome component n=1 Tax=Ap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_977contigC-australica_Contig_977:7238..10910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps268598
Model size2486
Max annot lvl2836|Bacillariophyta
KEGG koko:K06961
Hectar predicted targeting categoryother localisation
Exons9
Evalue8.58e-138
EggNOG OGsCOG1094@1|root,KOG2874@2759|Eukaryota,2XBS2@2836|Bacillariophyta
Ec32 ortholog descriptionK Homology domain, type 1
Ec32 orthologEc-09_003790.1
DescriptionRequired for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly
Cds size1104
COG categoryA
BRITEko00000,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_977.4.1prot_C-australica_Contig_977.4.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_977 7244..9222 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588843.3250573-UTR-C-australica_Contig_977:7237..72431682588843.3250573-UTR-C-australica_Contig_977:7237..7243Chrysoparadoxa australica CS_1217UTRC-australica_Contig_977 7238..7243 +
1682588843.4286382-UTR-C-australica_Contig_977:9222..99121682588843.4286382-UTR-C-australica_Contig_977:9222..9912Chrysoparadoxa australica CS_1217UTRC-australica_Contig_977 9223..9912 +
1682588843.4406426-UTR-C-australica_Contig_977:10042..101511682588843.4406426-UTR-C-australica_Contig_977:10042..10151Chrysoparadoxa australica CS_1217UTRC-australica_Contig_977 10043..10151 +
1682588843.4594276-UTR-C-australica_Contig_977:10333..109101682588843.4594276-UTR-C-australica_Contig_977:10333..10910Chrysoparadoxa australica CS_1217UTRC-australica_Contig_977 10334..10910 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588843.3357275-CDS-C-australica_Contig_977:7243..74021682588843.3357275-CDS-C-australica_Contig_977:7243..7402Chrysoparadoxa australica CS_1217CDSC-australica_Contig_977 7244..7402 +
1682588843.350324-CDS-C-australica_Contig_977:7466..75201682588843.350324-CDS-C-australica_Contig_977:7466..7520Chrysoparadoxa australica CS_1217CDSC-australica_Contig_977 7467..7520 +
1682588843.3637314-CDS-C-australica_Contig_977:7587..77581682588843.3637314-CDS-C-australica_Contig_977:7587..7758Chrysoparadoxa australica CS_1217CDSC-australica_Contig_977 7588..7758 +
1682588843.376315-CDS-C-australica_Contig_977:8022..82111682588843.376315-CDS-C-australica_Contig_977:8022..8211Chrysoparadoxa australica CS_1217CDSC-australica_Contig_977 8023..8211 +
1682588843.3933384-CDS-C-australica_Contig_977:8332..84941682588843.3933384-CDS-C-australica_Contig_977:8332..8494Chrysoparadoxa australica CS_1217CDSC-australica_Contig_977 8333..8494 +
1682588843.405133-CDS-C-australica_Contig_977:8724..88321682588843.405133-CDS-C-australica_Contig_977:8724..8832Chrysoparadoxa australica CS_1217CDSC-australica_Contig_977 8725..8832 +
1682588843.4166982-CDS-C-australica_Contig_977:8961..92221682588843.4166982-CDS-C-australica_Contig_977:8961..9222Chrysoparadoxa australica CS_1217CDSC-australica_Contig_977 8962..9222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_977.4.1

>prot_C-australica_Contig_977.4.1 ID=prot_C-australica_Contig_977.4.1|Name=mRNA_C-australica_Contig_977.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=368bp
MSGGGGGKNHNKYRRAKPWDHAGINHWEQEKWTGDEMCGTLLEESSFATL
FPKYREKYLREVWPIVTRALEKVGISCELDLVEGSMSVCTTRKTRDPYII
VKARDLIKLLARSIPAAQALRILEDDIQCDIIKIGGMVRSKERFVKRRQR
LLGPDGATLKALELLSGCYILVQGNTVACMGSYAGLKSARKVVVECMQNV
HPVYNIKTLMIKKELEKDPALAGEDWSRFLPHFKKKNVARKKPHKVNKKK
EYTPFPPPQSESKVDKQLESGEYFLNDKQRKVKAQAQRRAAAAEKQRMKT
VASAGDGALSEKSDPKTYSPARVREDASTHTTASVARKLAGRKAKRVAEE
DLSMSQFVHSKRPKKAK*
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mRNA from alignment at C-australica_Contig_977:7238..10910+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_977.4.1 ID=mRNA_C-australica_Contig_977.4.1|Name=mRNA_C-australica_Contig_977.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3673bp|location=Sequence derived from alignment at C-australica_Contig_977:7238..10910+ (Chrysoparadoxa australica CS_1217)
GGTGCCATGAGCGGAGGAGGCGGGGGCAAGAATCACAACAAGTACAGGCG GGCGAAGCCCTGGGACCACGCAGGTATTAACCACTGGGAGCAAGAGAAAT GGACTGGGGATGAAATGTGTGGGACACTATTGGAAGAGAGTAGCTTTGCG ACACTCTTTCCCAAGGTGAGATGATGGCCTAATTACTATTGGTCCTTCCA CTCACAAAACGCTCTCTTTTTGGGCCTAGTATCGAGAGAAGTATTTGAGG GAGGTGTGGCCCATTGTGACAAGGGCATTAGAGGTGAGCAATGCCAACCA CAGTGTGGTGGCTGGGCATGTACTCTAGCTTACGCCTCGCTTGCCAACAG AAAGTGGGTATCTCCTGTGAGCTGGACTTGGTGGAAGGGTCCATGTCAGT TTGCACGACTCGCAAAACTCGCGATCCATATATCATTGTCAAAGCTAGGG ACCTTATCAAGCTTCTCGCACGAAGCATTCCGGCCGCGCAAGCACTGCGC ATTCTGGAAGATGACATTCAGGTATTATTTGGTTTGTTGACTGGTGCACG CCCTTTTCCGCTAAGCTTACGGTGGATCCAACATCATACATATCATTGAC ACCTGTCCTGAATCTATGCTTGCAGTGTGACATAATAAACTAAGCTTACG GTGGATCCAACATCATGTATATCATTGACACCCTCTCCTGAATCTATGCT TGCAGTGTGACATAATAAACTGAGCTTACGGTGGATCCAACATCATACAT ATCATTGACACCCTGTCCTGAATCTATGCTTGCAGTGTGACATAATAAAG ATTGGCGGCATGGTGCGCAGCAAGGAGAGGTTTGTCAAGAGGCGGCAGCG GTTGTTGGGGCCCGATGGTGCCACCCTTAAAGCCCTGGAGCTGCTCAGTG GTTGCTACATCCTTGTACAAGGCAATACTGTGGCATGCATGGGAAGCTAT GCAGGGCTTAAATCAGCTCGCAAGGTCTGAAGAATACCTGAGGTTTCCTT GGGTGACTTGCCCTGGAGAAGGCGCCGTGCATGTTGGACTGACTATCCTG GCCTTGCGTGACCTCCCTCTCCCTGCTCACGCTCATGATCCATAGGTGGT AGTGGAATGCATGCAGAATGTTCACCCTGTGTACAACATTAAAACCTTGA TGATAAAGAAGGAGCTTGAGAAGGACCCAGCTCTAGCAGGAGAGGACTGG AGCAGGTTCCTGCCACACTTCAAGAAGAAGAATGTTGCACGAAAGAAACC GCACAAGGTGAGCAATGGGGTCCACTTTTCCCTGCAAGCTCTCTTCTCCC CTTGAGGCTTGCATATCGTTACTTGGCAGCCTATGGCTCGCACCTAGGGC TATCTAAGCCGCACCTCCATGGACTACTGTTCTGTCACATCTGACAAGGG CCAAGATGCTACTCATCTTGATGGATTCGTGCTTGTTTTCTAGATGCCTT AAATTCATAATAACGGCCTTCTCTTATCCCCATTCAGGTGAACAAAAAGA AGGAGTATACTCCCTTCCCCCCGCCACAGAGTGAGAGCAAAGTGGATAAG CAACTGGAAAGTGGAGAGTACTTCCTGAACGATAAGCAGCGCAAGGTACA CGCAGGCCCCGCCCCATTGCCCCACAGCCTTCATCAAAGCTTACCTGCGT AGCGCCAACTATCATCTAATACCCTTGACGCAACTGCTTCCCTTGTGCTG CGATTGACGTCCTTGTACGCTTAGGTGAAAGCTCAGGCTCAGAGGCGGGC GGCGGCTGCTGAAAAGCAACGAATGAAGACAGTAGCAAGTGCTGGTGATG GTGCCCTCAGTGAGAAGAGCGACCCGAAAACATACAGCCCGGCTAGAGTT CGTGAGGATGCCAGCACCCATACCACTGCTTCCGTTGCTCGGAAGCTTGC TGGCAGAAAAGCCAAGAGGGTAGCAGAGGAAGATCTCAGTATGAGCCAGT TTGTGCACAGCAAGCGACCAAAGAAGGCAAAGTGAGAAAAAAAATCCAGT GGTGGACTGCTCCGTCGCAATTCAGAATCATTTGGGCTGAAACCTTACAG AAACTGCTTTGCACTACTTCTGTGGTTCTGGCGGCTATGCCCGCGCTCTC CTATCAGCTAAGGGATTTTGCACGCCAATCAAGTCCCTCTAATGGGACGT AACCTCCTTGGAAAGCACTGTCCTCCTCTTCCTGCCGCCGCCTCTTGCGA CTCTGTAGCAAGTTTGTTATTTCGCCCACTGCACTATCTTTGGGCGCCTC CCCAACAGCCACATGCCTAAGCTCCGCAGCAGCCGATGAGGCAGCAGCAG GCTGTTGGATTGTTGCCAACTTCGCCTCTGCCGCTGCAGGCAATGTAGAA ACAACAGCTGCAGGAGTAGCAGTGACAAAAAGAGTGACGGTGGCGTTTCA GTGCACATTTGAGGCCTTGAGGCCAGCTTCTACTCTGGGCAGCCCCCCCT GTTTGCACCTGGCAGTCATTCACCATATGCCTCCTCCCATACACCGACCA CACTGAGAAAAGATAACTCGCTTGCTCTCATTTATCCTGGAGAGTCGTGC TTGAAAGAGCGAAGGTAAATGGTCCATCTCACCTCTTGAGCCACCCTTGC TAGCTTTCCTCCTCTCGGAATGTTGCACCAGTTCTGCAAAGCGGCCCATG TACGTAAGCTGCTCCAACTGCTCTCGCTCCTCCTGAAACAAGCATTCAAG GAGAACGTGGCATGAGCTTGTGGGGCTCACCACGCAATATATGGCATGTG GGGCAAATGTCCCAAAAGCAGAGCAAACCCCCTTGTTCAATCTGATACTT AAGAGACAACTAACTTGCAGCTTGGTGTCCATCTCTATTGCCTCGTCCCC CACTTCCTCTTCAGCTTCGTCCTTATTAACTTTGGCAGCAAATGTTTGAA ACTCCCCCCAATCAGCCTATACAAATTGAGGTGGAAGGCGTGAGATATGA ATCAACTATGGCTTGCCAAGAGCCATAAAGGAGTGATGAGCTTCATCGAG CCTCATGAGGGGAGTCGCACTGCAATCTAGCCAAGGCAATTGCTATTGAG GATCTGTTCCGCACAAAAAAAAAAAAACAAGCACAAGGCGCAAAAGATGA CCTGCTGCTCAGGAGTAAGCTTCTTTCGCTTCTCCTTGGGAGCCTGAGGG GCTAAGCCAAGCAAGGTGTGCAGTGGAGTCAAGTTATGGCACAGTTGGTG TGTGTTTGAGATGCTCAGTGAGATAGGTTGTTAAAGAGTAAATGGGCCAT CAGGAGATGGGAAAGAAAGAAAGAGGAAAGATTAAACAGTGTTCAATTCA AGGTCTTACTGCTGCTGCTAAGTCTCAGAGAATGAATCACTTCGGTAAGG CATGGTTTTCAACGTATCCAGCAGTGGGTAGTGAGTGAGCAACAAAGGGT GGTGATCCTAGTGGTAAGCAAGAGGTTATAGGAAAAGGCAAATTGCAGGG AATTCAGCAGTTGGTCGGTGAACAGGAGTGATGATTCTGGGTTAATGATA GATAGGAGGGTCCATGGTACGGGTGTTCTTCCAGTGTGAGGAAACAAAAA AGAAATGATGAATGAGAGAATAGGGGGAGACCTGATTTTGTGGGCGCGTC GAAGAAGTCAGCAGGAAGGGTGCCCTCTGCACTGATTGTACCACCTTCCT GCTCAAGCCCTTGCTCCTGCCAT
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Coding sequence (CDS) from alignment at C-australica_Contig_977:7238..10910+

>mRNA_C-australica_Contig_977.4.1 ID=mRNA_C-australica_Contig_977.4.1|Name=mRNA_C-australica_Contig_977.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1104bp|location=Sequence derived from alignment at C-australica_Contig_977:7238..10910+ (Chrysoparadoxa australica CS_1217)
ATGAGCGGAGGAGGCGGGGGCAAGAATCACAACAAGTACAGGCGGGCGAA
GCCCTGGGACCACGCAGGTATTAACCACTGGGAGCAAGAGAAATGGACTG
GGGATGAAATGTGTGGGACACTATTGGAAGAGAGTAGCTTTGCGACACTC
TTTCCCAAGTATCGAGAGAAGTATTTGAGGGAGGTGTGGCCCATTGTGAC
AAGGGCATTAGAGAAAGTGGGTATCTCCTGTGAGCTGGACTTGGTGGAAG
GGTCCATGTCAGTTTGCACGACTCGCAAAACTCGCGATCCATATATCATT
GTCAAAGCTAGGGACCTTATCAAGCTTCTCGCACGAAGCATTCCGGCCGC
GCAAGCACTGCGCATTCTGGAAGATGACATTCAGTGTGACATAATAAAGA
TTGGCGGCATGGTGCGCAGCAAGGAGAGGTTTGTCAAGAGGCGGCAGCGG
TTGTTGGGGCCCGATGGTGCCACCCTTAAAGCCCTGGAGCTGCTCAGTGG
TTGCTACATCCTTGTACAAGGCAATACTGTGGCATGCATGGGAAGCTATG
CAGGGCTTAAATCAGCTCGCAAGGTGGTAGTGGAATGCATGCAGAATGTT
CACCCTGTGTACAACATTAAAACCTTGATGATAAAGAAGGAGCTTGAGAA
GGACCCAGCTCTAGCAGGAGAGGACTGGAGCAGGTTCCTGCCACACTTCA
AGAAGAAGAATGTTGCACGAAAGAAACCGCACAAGGTGAACAAAAAGAAG
GAGTATACTCCCTTCCCCCCGCCACAGAGTGAGAGCAAAGTGGATAAGCA
ACTGGAAAGTGGAGAGTACTTCCTGAACGATAAGCAGCGCAAGGTGAAAG
CTCAGGCTCAGAGGCGGGCGGCGGCTGCTGAAAAGCAACGAATGAAGACA
GTAGCAAGTGCTGGTGATGGTGCCCTCAGTGAGAAGAGCGACCCGAAAAC
ATACAGCCCGGCTAGAGTTCGTGAGGATGCCAGCACCCATACCACTGCTT
CCGTTGCTCGGAAGCTTGCTGGCAGAAAAGCCAAGAGGGTAGCAGAGGAA
GATCTCAGTATGAGCCAGTTTGTGCACAGCAAGCGACCAAAGAAGGCAAA
GTGA
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