mRNA_C-australica_Contig_976.6.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_976.6.1
Unique NamemRNA_C-australica_Contig_976.6.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_976.6.1 vs. uniprot
Match: D7FX47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX47_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 2.330e-10
Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 2 
Query:  131 GGEAQVPLMTAERCMGIIAKIYQSKEGLDATLSQRYMGGASH----KRRRFQRFDRFVLQYHIQLYGTKKLARKKLQYLCKAATHHGLTNPRL 397
            G  ++V L++AER    IAKIY SK  +D  L  R  G  S     +R++ QR DRFVLQ+H++ +GTKKLAR+ L  LCK+ T    TNPR+
Sbjct:  394 GRSSKVALLSAERVNATIAKIYFSKMQVDRKLLTRD-GSLSWVDKCRRKKDQRMDRFVLQFHVRQFGTKKLARRNLHQLCKSITKLAPTNPRI 485
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BLAST of mRNA_C-australica_Contig_976.6.1 vs. uniprot
Match: A0A6H5K7X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X3_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.560e-9
Identity = 43/93 (46.24%), Postives = 57/93 (61.29%), Query Frame = 2 
Query:  131 GGEAQVPLMTAERCMGIIAKIYQSKEGLDATLSQRYMGGAS----HKRRRFQRFDRFVLQYHIQLYGTKKLARKKLQYLCKAATHHGLTNPRL 397
            G   +V L++AER    IAKIY SK  +D  L  R  G  S     +R++ QR DRFVLQ+H++ +GTKKLAR+ L  LCK+      TNPR+
Sbjct:  508 GRSPKVALLSAERVNAAIAKIYYSKMQVDRKLLIRD-GSLSWVDKSRRKKDQRMDRFVLQFHVRQFGTKKLARRNLHQLCKSIAKLAPTNPRI 599
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_976.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FX47_ECTSI2.330e-1047.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7X3_9PHAE1.560e-946.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_976contigC-australica_Contig_976:13867..17555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1510
Hectar predicted targeting categoryother localisation
Exons13
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_004290.1
Cds size1233
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588842.697346-UTR-C-australica_Contig_976:13866..139891682588842.697346-UTR-C-australica_Contig_976:13866..13989Chrysoparadoxa australica CS_1217UTRC-australica_Contig_976 13867..13989 -
1682588842.8229856-UTR-C-australica_Contig_976:17088..171031682588842.8229856-UTR-C-australica_Contig_976:17088..17103Chrysoparadoxa australica CS_1217UTRC-australica_Contig_976 17089..17103 -
1682588842.831624-UTR-C-australica_Contig_976:17304..174031682588842.831624-UTR-C-australica_Contig_976:17304..17403Chrysoparadoxa australica CS_1217UTRC-australica_Contig_976 17305..17403 -
1682588842.841446-UTR-C-australica_Contig_976:17515..175551682588842.841446-UTR-C-australica_Contig_976:17515..17555Chrysoparadoxa australica CS_1217UTRC-australica_Contig_976 17516..17555 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588842.708683-CDS-C-australica_Contig_976:13989..143021682588842.708683-CDS-C-australica_Contig_976:13989..14302Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 13990..14302 -
1682588842.7280211-CDS-C-australica_Contig_976:14637..148201682588842.7280211-CDS-C-australica_Contig_976:14637..14820Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 14638..14820 -
1682588842.7411184-CDS-C-australica_Contig_976:14934..150261682588842.7411184-CDS-C-australica_Contig_976:14934..15026Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 14935..15026 -
1682588842.7515228-CDS-C-australica_Contig_976:15164..152371682588842.7515228-CDS-C-australica_Contig_976:15164..15237Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 15165..15237 -
1682588842.7596962-CDS-C-australica_Contig_976:15486..155791682588842.7596962-CDS-C-australica_Contig_976:15486..15579Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 15487..15579 -
1682588842.7683468-CDS-C-australica_Contig_976:15720..157631682588842.7683468-CDS-C-australica_Contig_976:15720..15763Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 15721..15763 -
1682588842.7777324-CDS-C-australica_Contig_976:15984..160411682588842.7777324-CDS-C-australica_Contig_976:15984..16041Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 15985..16041 -
1682588842.7873836-CDS-C-australica_Contig_976:16135..162651682588842.7873836-CDS-C-australica_Contig_976:16135..16265Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 16136..16265 -
1682588842.7986503-CDS-C-australica_Contig_976:16527..166631682588842.7986503-CDS-C-australica_Contig_976:16527..16663Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 16528..16663 -
1682588842.8064172-CDS-C-australica_Contig_976:16772..168341682588842.8064172-CDS-C-australica_Contig_976:16772..16834Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 16773..16834 -
1682588842.8144817-CDS-C-australica_Contig_976:17037..170881682588842.8144817-CDS-C-australica_Contig_976:17037..17088Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 17038..17088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_976.6.1prot_C-australica_Contig_976.6.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_976 13990..17088 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_976.6.1

>prot_C-australica_Contig_976.6.1 ID=prot_C-australica_Contig_976.6.1|Name=mRNA_C-australica_Contig_976.6.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=411bp
MTAERCMGIIAKIYQSKEGLDATLSQRYMGGASHKRRRFQRFDRFVLQYH
IQLYGTKKLARKKLQYLCKAATHHGLTNPRLKLFCWLAGVAVRVSARPPV
YQKLDFHAYACSDFLIPILGLLFQSADDVDGTLERWLGSGKESVKVSIPS
LLTAMRSVCRLLPDNHPKMVDFSIKMNQLGENGTAAGVATGSTAKGDKGE
QENASSIATGKASKKVKAVMRGAQQRSSQSPTTTSEKRWHEAMSVRTVDL
DKALLAAMEVFLAEMEQRVMVVSLRSITLLQRWLRHSRLRRLQKEGVVVS
AQEEELNNRSQEELLESAKLARTKLEGLMREATEEELGTNSTLMTQLEAS
QNAAEAGVLQGMIHQKGDERETHTAKGDDASMLMLDGFAGANAVTSDHDR
AGLESEADAG*
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mRNA from alignment at C-australica_Contig_976:13867..17555-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_976.6.1 ID=mRNA_C-australica_Contig_976.6.1|Name=mRNA_C-australica_Contig_976.6.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3689bp|location=Sequence derived from alignment at C-australica_Contig_976:13867..17555- (Chrysoparadoxa australica CS_1217)
AAGCGACACTGGAGCTGGTAACACTGGTAAAAGTGATGAGGTAAGAGTAA
ACAGAGTAAGACTTTCTTGTGAGTGAAGCGAACTGGACAGTCCGAGTACT
ATCAGCAACTCTGTGGTAATGCTTTGAGTCTCACCCCATCCTTGCCCATC
AGACCCATCAAGAAGCACCTGCATCAGCCAGTGCAGCACCTTTCACAGCT
GTTGCAAGGCTTAAGCGTCACAAACGAAAATCGCGTGGTAAAGGCGGTGA
AGTAAGTCATGTCGCTGCAAGCAGCAAAGGGCGACCTCACCCCCCAATTG
ATATGGTGGCTATGTGAGCGATTTTAGTGATCCTAGCACCATTTACATAG
CTGGTTGATGCTGATGAAACACCTGTGAACCCATTGCATTTCATTGCTCG
GCCCAGCTGCTGCCATCAATACTTATGTGCGCATAACCATTGCCATTTGT
AGGCTCAAGTACCACTCATGACAGCCGAGAGATGCATGGGGATCATTGCC
AAGATCTACCAGAGCAAGGTGAATAATAAAGATAAAGGAGGAGGCAGACT
AAGTAGAGCTACACCCTATCCCACTCTATTGCCATACACAGCTGTCATAT
GCCTCACTGTAACCTTCTTGCTCTCTCTCTTCTCAATGTGCGGTGGTGCT
GCCTCATTCGTGCTGGCTCCTTGTGTCCTGTCAAACACTGCATGTCATTT
CACATGGTCATGTGACATCAGGAAGGGCTTGATGCCACCCTGTCCCAGCG
TTATATGGGGGGGGCAAGTCACAAGAGAAGAAGGTGCATGGCATTGCATT
GTATTGTGTTGCTGCAATGATGCATAATGCTGCTTATTGCTTTACGCTTA
TCATACCTGACCTCTTTTGTTTCTGCGCTTCCTCAACTCAAGGTTTCAAC
GCTTTGATCGCTTTGTGCTTCAGTACCACATCCAACTGTATGGGACCAAA
AAGCTAGCACGAAAGAAGCTGCAATACCTGTGCAAAGCTGCCACGCATCA
TGGCCTCACAAATCCCAGGCTCAAGCTGGTACTATATTCACCCCTGATCT
GGACCTTCTCATTTGCTTGCCCATTCAATCACTTGAGCCATGCAGGGACA
GCTTTGTAGGAGGCAGGCCCTTACTGCCAGTTCTCAATCTTCCGGCTTAC
TACTAGCTCAGCTCAACTCATCTGGGATCACATTGTTACACCTCTACCAC
TCATCAAGACCACCGCTAGTATTAGTGGTTTGGATGCCAGCAACGCATGT
CCATACCCTCATATCCGCTGTCTCATTCATTTTTTTTCAGTTTTGCTGGC
TTGCTGGTGTTGCGGTTCGTGTCTCTGCTCGGCCACCTGTGTATCAGAAG
CTCGACTTTCATGCCTATGCATGCTCAGACTTCCTGATACCCATTCTAGG
GCTGCTCTTTCAGTCAGCAGGTGAGAAGCATCGCCTGAAGAGATGTAATG
TAATGCAGCTAGTCAGATGCTATGCCCCAGAGGCCATGCTAATTCTTAGT
TGCCCTGATATTAGATGATGTCGATGGGACCCTTGAGAGATGGTTGGGCT
CAGGCAAAGAAAGCGTTAAAGGTGAGAGCTGCAAGAGCAAAAGAACCACA
CTTTCCTTAGGAACTTTCCTTAGGAACTTTCCTTAGAACTGCAGGGATCA
CTATTGCTGCCTGTGCTTCAGGCTGGTGTGAAGGAGTGCTGCCTCAGCGC
AGCACTGATGCAGGGGCAAACATGCTTTCTGCAATGCATGGTGGGATATA
ACTGATCTTTTGTTTTATTTTCCCTCCTCTTTATCCTTCTAGTGTCTATT
CCCAGCTTGCTGACTGCCATGCGCAGTGTCTGCAGGTATGCGATTACAAA
AAGAAAGAAAGGAAGTAGCTTGCTGCTGGCAGTGATGCCTGAGAGAGTGA
ATGAGTGAGTCAATGAAACAGAACACAGATGCGATAAAACTAACCCCGCA
CCACAAATACGATTTGAACCCTCTAGGCTCCTGCCGGATAACCATCCTAA
GATGGTAGATTTCAGCATCAAAATGAATCAGCTTGGAGAGAATGGCACTG
CAGCTGGCGTTGCTACAGGGTACGGCATCACAATCCTTCAAACCATCATC
CTTCTTTCCAATCCACTAGAGCATGACAAAAAAGGCTGACCTTTCTCAGA
CCTTTCTCAGACCTTTCTTGCAACTTCCTTCCCTTCAGTGCTGTTGGCTC
AGTCATTGCTAGCGGGCCAGCCAGGAGCACGAGCCTGCCCTCACAACTCA
CAAAAAGAAGTTATATGCAATGGTTGCTCAGCTCAACCCACCTTGTTTCA
CCCCACTCTGCTAAACAGCTCGACGGCTAAGGGAGATAAAGGAGAGCAAG
AGAATGCTTCGAGCATTGCCACAGGCAAGGCATCGAAGAAGGTATATATA
CATATATATATATATATATATATATACGGCCAAGACCCAGGTTGCCAGAC
CCTTCCTTTCATTTACTTCATGGTGTGTACGAGGCATCTCCGGCACCTAA
AGTAAAACTAAAGCGTATTGTGCACTCAGGTAAAGGCAGTCATGCGAGGG
GCCCAGCAGCGCTCTAGTCAGTCCCCCACCACGACATCTGAGAAGAGATG
GCATGAAGCTATGAGCGTAAGGTGAGGCTGATGCCCTGGTCACGGATGAG
AGGGAGCAGGAGGGGGTGATGTGTCGGAGCCTAACCTTTGACCCACACAT
TGACTGCTTATCGCTCTGTCCCTTGCCATGTTTAGGACGGTGGACCTCGA
CAAGGCTCTGTTAGCAGCTATGGAAGTCTTTCTGGCAGAGATGGAGCAGC
GAGTGATGGTTGTGAGCTTGCGCAGCATAACGCTGCTGCAGCGGTGGCTC
AGGCATAGTCGGCTTCGGCGCTTGCAGAAGGAGGGAGTGGTGGTGTCAGC
TCAGGAAGAGGAACTCAAGTAGGTGGTCTCCCTGGCCTTGCCTTATAGAT
AGCTTGCTCAGCAAGCCATGCCAGATAACGTCATGATGTCTCACTGCCAA
ATTGCACATATCAAGCTTGGCTGCCATTGCTTGATTACTCACTAGCACGT
AACTTTGAGGCTGCCGATGACATGGCTCTGATGCCCGGCTTGCCATATCC
TAACACTATCCTATCACATGTGAAACTGACGGACCTCAGCAGTGGTGCAG
CATGCATACCTTCTACAGCTTCACTCCCCTCCCCTCTACTCATTCACTTT
TCCAGCTCACCCACTCATACGTTACCAAGCTCATTCATCTCATTCCCCTC
TAGCAATCGCTCTCAAGAGGAGCTCCTTGAGTCGGCAAAGTTGGCTCGAA
CCAAGCTGGAGGGATTGATGAGAGAGGCAACGGAAGAGGAGCTGGGCACA
AACTCCACGCTCATGACTCAACTAGAGGCTTCTCAGAACGCAGCTGAGGC
GGGTGTACTCCAGGGCATGATCCATCAGAAGGGTGATGAGAGGGAGACAC
ACACAGCAAAGGGTGATGATGCGTCTATGCTGATGCTGGATGGCTTTGCC
GGTGCCAATGCTGTCACGAGTGATCATGACCGAGCAGGGCTTGAGAGTGA
GGCAGATGCAGGATGAAAAGGTGAATGAAGTTGAGGTTTGGAGGAGAGCA
TGACATGACGGCTAGGTTGCCAGCAGGGTACTCAGTTGCCTTACATTAAA
CACACTGACTGTAAGATGGAATGGAAGCTACGTTATAGC
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Coding sequence (CDS) from alignment at C-australica_Contig_976:13867..17555-

>mRNA_C-australica_Contig_976.6.1 ID=mRNA_C-australica_Contig_976.6.1|Name=mRNA_C-australica_Contig_976.6.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1233bp|location=Sequence derived from alignment at C-australica_Contig_976:13867..17555- (Chrysoparadoxa australica CS_1217)
ATGACAGCCGAGAGATGCATGGGGATCATTGCCAAGATCTACCAGAGCAA
GGAAGGGCTTGATGCCACCCTGTCCCAGCGTTATATGGGGGGGGCAAGTC
ACAAGAGAAGAAGGTTTCAACGCTTTGATCGCTTTGTGCTTCAGTACCAC
ATCCAACTGTATGGGACCAAAAAGCTAGCACGAAAGAAGCTGCAATACCT
GTGCAAAGCTGCCACGCATCATGGCCTCACAAATCCCAGGCTCAAGCTGT
TTTGCTGGCTTGCTGGTGTTGCGGTTCGTGTCTCTGCTCGGCCACCTGTG
TATCAGAAGCTCGACTTTCATGCCTATGCATGCTCAGACTTCCTGATACC
CATTCTAGGGCTGCTCTTTCAGTCAGCAGATGATGTCGATGGGACCCTTG
AGAGATGGTTGGGCTCAGGCAAAGAAAGCGTTAAAGTGTCTATTCCCAGC
TTGCTGACTGCCATGCGCAGTGTCTGCAGGCTCCTGCCGGATAACCATCC
TAAGATGGTAGATTTCAGCATCAAAATGAATCAGCTTGGAGAGAATGGCA
CTGCAGCTGGCGTTGCTACAGGCTCGACGGCTAAGGGAGATAAAGGAGAG
CAAGAGAATGCTTCGAGCATTGCCACAGGCAAGGCATCGAAGAAGGTAAA
GGCAGTCATGCGAGGGGCCCAGCAGCGCTCTAGTCAGTCCCCCACCACGA
CATCTGAGAAGAGATGGCATGAAGCTATGAGCGTAAGGACGGTGGACCTC
GACAAGGCTCTGTTAGCAGCTATGGAAGTCTTTCTGGCAGAGATGGAGCA
GCGAGTGATGGTTGTGAGCTTGCGCAGCATAACGCTGCTGCAGCGGTGGC
TCAGGCATAGTCGGCTTCGGCGCTTGCAGAAGGAGGGAGTGGTGGTGTCA
GCTCAGGAAGAGGAACTCAACAATCGCTCTCAAGAGGAGCTCCTTGAGTC
GGCAAAGTTGGCTCGAACCAAGCTGGAGGGATTGATGAGAGAGGCAACGG
AAGAGGAGCTGGGCACAAACTCCACGCTCATGACTCAACTAGAGGCTTCT
CAGAACGCAGCTGAGGCGGGTGTACTCCAGGGCATGATCCATCAGAAGGG
TGATGAGAGGGAGACACACACAGCAAAGGGTGATGATGCGTCTATGCTGA
TGCTGGATGGCTTTGCCGGTGCCAATGCTGTCACGAGTGATCATGACCGA
GCAGGGCTTGAGAGTGAGGCAGATGCAGGATGA
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