mRNA_C-australica_Contig_976.6.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_C-australica_Contig_976.6.1 vs. uniprot
Match: D7FX47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX47_ECTSI) HSP 1 Score: 73.9 bits (180), Expect = 2.330e-10 Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 2 Query: 131 GGEAQVPLMTAERCMGIIAKIYQSKEGLDATLSQRYMGGASH----KRRRFQRFDRFVLQYHIQLYGTKKLARKKLQYLCKAATHHGLTNPRL 397
G ++V L++AER IAKIY SK +D L R G S +R++ QR DRFVLQ+H++ +GTKKLAR+ L LCK+ T TNPR+
Sbjct: 394 GRSSKVALLSAERVNATIAKIYFSKMQVDRKLLTRD-GSLSWVDKCRRKKDQRMDRFVLQFHVRQFGTKKLARRNLHQLCKSITKLAPTNPRI 485
BLAST of mRNA_C-australica_Contig_976.6.1 vs. uniprot
Match: A0A6H5K7X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X3_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 1.560e-9 Identity = 43/93 (46.24%), Postives = 57/93 (61.29%), Query Frame = 2 Query: 131 GGEAQVPLMTAERCMGIIAKIYQSKEGLDATLSQRYMGGAS----HKRRRFQRFDRFVLQYHIQLYGTKKLARKKLQYLCKAATHHGLTNPRL 397
G +V L++AER IAKIY SK +D L R G S +R++ QR DRFVLQ+H++ +GTKKLAR+ L LCK+ TNPR+
Sbjct: 508 GRSPKVALLSAERVNAAIAKIYYSKMQVDRKLLIRD-GSLSWVDKSRRKKDQRMDRFVLQFHVRQFGTKKLARRNLHQLCKSIAKLAPTNPRI 599 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_976.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_976.6.1 >prot_C-australica_Contig_976.6.1 ID=prot_C-australica_Contig_976.6.1|Name=mRNA_C-australica_Contig_976.6.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=411bp MTAERCMGIIAKIYQSKEGLDATLSQRYMGGASHKRRRFQRFDRFVLQYHback to top mRNA from alignment at C-australica_Contig_976:13867..17555- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_976.6.1 ID=mRNA_C-australica_Contig_976.6.1|Name=mRNA_C-australica_Contig_976.6.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3689bp|location=Sequence derived from alignment at C-australica_Contig_976:13867..17555- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_976:13867..17555- >mRNA_C-australica_Contig_976.6.1 ID=mRNA_C-australica_Contig_976.6.1|Name=mRNA_C-australica_Contig_976.6.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1233bp|location=Sequence derived from alignment at C-australica_Contig_976:13867..17555- (Chrysoparadoxa australica CS_1217)back to top |