Homology
BLAST of mRNA_C-australica_Contig_976.3.1 vs. uniprot
Match:
A0A835ZF57_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF57_9STRA)
HSP 1 Score: 137 bits (344), Expect = 8.520e-33
Identity = 65/137 (47.45%), Postives = 91/137 (66.42%), Query Frame = 3
Query: 150 IDLFEAAKVSDVAACQIAVDKGADINF-QYRGGAVMACQGWRLRMGGVEWGLQEWDAPEGVIPEGGDTLLMIAIKCRLAPVVAWIQQLDQLRKTQKNNAGKTAEDVAREYGEEQLIDNDDLGALPASPVSRSKVGVM 557
+DLFEAAK SD+ AC+ A+ GAD+NF ++ GG+++A +GWRL++GG+EWGLQEWDAP GV+P GDT+LMIA+KC + + AW+ + + KN KTAEDVAR+YG + + G S G +
Sbjct: 312 VDLFEAAKASDMEACEAALAAGADLNFNRHNGGSLLAWKGWRLKIGGIEWGLQEWDAPIGVVPVTGDTILMIALKCDMQKLAAWVVARPEYKPEVKNADSKTAEDVARDYGRSHFLTGGEAGTPAGGAAQESTPGAL 448
BLAST of mRNA_C-australica_Contig_976.3.1 vs. uniprot
Match:
D7G360_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G360_ECTSI)
HSP 1 Score: 69.3 bits (168), Expect = 1.150e-9
Identity = 42/125 (33.60%), Postives = 67/125 (53.60%), Query Frame = 3
Query: 141 EAQIDLFEAAKVSDVAACQIAVDKGADINFQYRGGAVMACQGWRLRMG----GVEWGL---QEWDAPEGVIPEGGDTLLMIAIKCRLAPVVAWIQQLDQLRKTQKNNAGKTAEDVAREYGEEQLI 494
+AQ++LF A K D+ + A DKGA++N+ + + W LR+ G+ G + W P+G GDTL+M+A+KCR A++ D+L + N AG + D+AR G+E L+
Sbjct: 42 KAQVELFRAIKSGDLTKARKAYDKGANVNWPLDRWIMGGREHWGLRVQVKPLGIYLGFSARESWRVPDGEGANRGDTLVMVALKCRKQEEAAFLLGCDRLNRNCLNEAGNSVADIARATGQEFLL 166
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_976.3.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 8.52e-33 / Id = 47.45 Expect = 1.15e-9 / Id = 33.60 Sequence A0A835ZF57_9STRA D7G360_ECTSI
Match Name E-value Identity Description
A0A835ZF57_9STRA 8.520e-33 47.45 Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more] D7G360_ECTSI 1.150e-9 33.60 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 926 Hectar predicted targeting category other localisation Exons 8 Ec32 ortholog description expressed unknown protein Ec32 ortholog Ec-03_004610.1 Cds size 810
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682588842.4987078-UTR-C-australica_Contig_976:5857..5973 1682588842.4987078-UTR-C-australica_Contig_976:5857..5973 Chrysoparadoxa australica CS_1217 UTR C-australica_Contig_976 5858..5973 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682588842.5100703-CDS-C-australica_Contig_976:5973..6006 1682588842.5100703-CDS-C-australica_Contig_976:5973..6006 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_976 5974..6006 + 1682588842.5204427-CDS-C-australica_Contig_976:6189..6252 1682588842.5204427-CDS-C-australica_Contig_976:6189..6252 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_976 6190..6252 + 1682588842.530603-CDS-C-australica_Contig_976:6404..6485 1682588842.530603-CDS-C-australica_Contig_976:6404..6485 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_976 6405..6485 + 1682588842.5403936-CDS-C-australica_Contig_976:6706..6895 1682588842.5403936-CDS-C-australica_Contig_976:6706..6895 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_976 6707..6895 + 1682588842.550441-CDS-C-australica_Contig_976:7112..7197 1682588842.550441-CDS-C-australica_Contig_976:7112..7197 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_976 7113..7197 + 1682588842.5601208-CDS-C-australica_Contig_976:7451..7516 1682588842.5601208-CDS-C-australica_Contig_976:7451..7516 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_976 7452..7516 + 1682588842.569557-CDS-C-australica_Contig_976:7762..7875 1682588842.569557-CDS-C-australica_Contig_976:7762..7875 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_976 7763..7875 + 1682588842.579184-CDS-C-australica_Contig_976:8078..8259 1682588842.579184-CDS-C-australica_Contig_976:8078..8259 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_976 8079..8259 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_976.3.1
>prot_C-australica_Contig_976.3.1 ID=prot_C-australica_Contig_976.3.1|Name=mRNA_C-australica_Contig_976.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=270bp
MPLSDAQREAQIDLFEAAKVSDVAACQIAVDKGADINFQYRGGAVMACQG back to top mRNA from alignment at C-australica_Contig_976:5858..8259+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_976.3.1 ID=mRNA_C-australica_Contig_976.3.1|Name=mRNA_C-australica_Contig_976.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2402bp|location=Sequence derived from alignment at C-australica_Contig_976:5858..8259+ (Chrysoparadoxa australica CS_1217)CAAAGACTGCCCTCTCCCGTAGAAGCCGCAAGAGCCAACCCACCAAGAAG
CCAGGAGCAACCCACACAGCCTGAGCGAAGAGAGACAGCATAGCGCGGAG
AAGTTGAGAAAGCACG ATGCCCTTGTCGGATGCGCAAAGAGAGGCTCAG G
TAACAGCTGGCTTTTGCTCTTACCCAGCTCTCCTTATTTATTTCCTCTCC
CATTCCCCCCCTCTCCTCTCGTCCTCCTTCTCCTTCCCTCCACATTTCGA
TACAATCTCGCTCACCTGCCAATCACGTCTGCTTGCTCCTTCCTGTTGGC
GCTCACCCCTCTTTTGATCACTTCTCTCACAGATTGATTTGTTTGAAGCC
GCAAAAGTATCTGATGTAGCAGCGTGCCAAATTGCTGTTGACAAG GCAAG
GCACATCCTGACCTGCGCCACATGCTCACTACTCCTTAATCTGCCTGCTT
GAAGCACGTCTCTTTTGTTGAACACTCGCAGTTCGTTTGCTTAAGCACAA
ACATTTACAGTCACCCTTATTTGACCCCTTCCCATCCCATCTCATAGGGT
GCTGATATCAACTTTCAGTACAGAGGTGGTGCAGTAATGGCATGCCAAGG
ATGGAGGCTAAGGATGGGTGGCGTTGAA GTAAGTTTTTGGGACGTAATGA
ACTGAGAAAATGAGTGACTGAATTAGTGACTGAAGGAGTAGATTCCAGAG
GCATGCTACGGCCTTGATACAGTGCAAGCAGCCACCTCCACCAAATAAGT
GTTTCACTGCTACATGAATCTATTACTTCTACGATTTCACTATCAGCCAC
ATATCACTCAACTCTTTTGATCCTTGCCACTCCTTGCTGGCTCACACAGT
GGGGGCTACAAGAGTGGGATGCACCTGAGGGTGTGATACCAGAAGGCGGT
GACACTCTTCTGATGATAGCCATTAAGTGTAGACTGGCACCAGTTGTTGC
ATGGATACAGCAGCTGGATCAACTAAGGAAAACCCAGAAGAATAACGCTG
GGAAGACAGCAGAGGATGTGGCACGGGAATATGGCGAG GTAGTAGGATTT
CCAGGATTTCCACATTTCATTTGAACTCTTCATATTTTTGGTCTTTACTC
TGTCGGATGGCGTTTGAGCTCTGAGCACTAGTATGCTCCTGCATGTGGAG
CTGGCTGTTGTCTGCACCTCACTTACATGCCACTGCCACTGTCAGCAGCT
AGTACCTGGACGCCAACAAATTCTCATTGCTTCCTTCTTTTCTCTCCCCT
TCCAGGAGCAACTGATTGACAATGATGACCTTGGTGCTTTGCCTGCTAGC
CCTGTATCACGAAGTAAAGTCGGAGTGATGGAGTCACCAT GTATGCTAGC
TCACTACTCAACCAACGCTGAATGCTCCCATCAATGGACTGCCTCTGCCT
CTCCTGATCACTCGCTCTATCCCATGGATTGCTCACTGCCACCGTCATAC
ACCATAGCAAGTGAATCAAATCAATTCCACACACACCAGCCAAATGTGAC
GTACAGCCCATAAAAGAACAAGTGGACGATGATCTATCTTACCTCTCTGA
CCCTTGCTCTGGCTTTCCTCATCTCATTGCTGTGTCCCCACTAGCTGGTG
CTCCAGTACTGCAGACCAGCATGTCACAGAGCGGCAGATACGTAGACCTG
AGAAATCAG GTTGCTAAAGCTCCTCGCTCTGAAACCGTGCCACAACTGTA
CCACAAGTTAACCCCTATCTACATGCCCTTGGATTGTGAGAATGCTATAG
TACCCCATAAGCTGGAGGATTAACTTTGACGCGAGCTGTAACCCTGACCC
TGAGCTGATGTCACTGAATTCCTGCTTGCATAAGTTATCCTGGTATTGCT
TCTCTAAGTTTTCTAACCTGCCTCTCCTCTCATTGTGTCTGATTATGTAT
GATAGGAAGAGCAAACTTTCCATGTCAGCGGCCCATACTCTGCATGGAGC
CCTACAAAACGTGGCTCAACTGACAGCGCCAGCACTGCAGCTGGCAGCCT
TTGTGATCAGCCACAAAG GTATGAAAGTGAGGGGCGGAGAAAGTGGAAGA
GGCACAGGCGGGGATATTCCATAGCATTCCTGCCCCTTGGGCTATGCTAT
TACTAGTGACTCACTCACTTACTCACTTCTCATCACTCTCATGTCAAGAG
ACTAAACGGCTCTGGCCTCACCAGACTTAACTAACTTGCGACCTTGGATT
TGATTTGATTTATCCTTTCAGCCCTAGCATGACGGATGAGAATGCGGTGC
TAAGGAGAGAAGTGTACAAGCTACGTGATACAGTTTCAATGCTCTCTAAG
CAGCAGCTCAAGAGTGAGAAGATGATTAATGACTTGAGCAATCGTCTCAA
GGCGGTTGAAGCAAGTCAGATGCCTCTTGCTAAGCCCAACTGGATGACGT
GA back to top Coding sequence (CDS) from alignment at C-australica_Contig_976:5858..8259+
>mRNA_C-australica_Contig_976.3.1 ID=mRNA_C-australica_Contig_976.3.1|Name=mRNA_C-australica_Contig_976.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=810bp|location=Sequence derived from alignment at C-australica_Contig_976:5858..8259+ (Chrysoparadoxa australica CS_1217) back to top