mRNA_C-australica_Contig_976.3.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_976.3.1
Unique NamemRNA_C-australica_Contig_976.3.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_976.3.1 vs. uniprot
Match: A0A835ZF57_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF57_9STRA)

HSP 1 Score: 137 bits (344), Expect = 8.520e-33
Identity = 65/137 (47.45%), Postives = 91/137 (66.42%), Query Frame = 3 
Query:  150 IDLFEAAKVSDVAACQIAVDKGADINF-QYRGGAVMACQGWRLRMGGVEWGLQEWDAPEGVIPEGGDTLLMIAIKCRLAPVVAWIQQLDQLRKTQKNNAGKTAEDVAREYGEEQLIDNDDLGALPASPVSRSKVGVM 557
            +DLFEAAK SD+ AC+ A+  GAD+NF ++ GG+++A +GWRL++GG+EWGLQEWDAP GV+P  GDT+LMIA+KC +  + AW+    + +   KN   KTAEDVAR+YG    +   + G         S  G +
Sbjct:  312 VDLFEAAKASDMEACEAALAAGADLNFNRHNGGSLLAWKGWRLKIGGIEWGLQEWDAPIGVVPVTGDTILMIALKCDMQKLAAWVVARPEYKPEVKNADSKTAEDVARDYGRSHFLTGGEAGTPAGGAAQESTPGAL 448
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BLAST of mRNA_C-australica_Contig_976.3.1 vs. uniprot
Match: D7G360_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G360_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.150e-9
Identity = 42/125 (33.60%), Postives = 67/125 (53.60%), Query Frame = 3 
Query:  141 EAQIDLFEAAKVSDVAACQIAVDKGADINFQYRGGAVMACQGWRLRMG----GVEWGL---QEWDAPEGVIPEGGDTLLMIAIKCRLAPVVAWIQQLDQLRKTQKNNAGKTAEDVAREYGEEQLI 494
            +AQ++LF A K  D+   + A DKGA++N+      +   + W LR+     G+  G    + W  P+G     GDTL+M+A+KCR     A++   D+L +   N AG +  D+AR  G+E L+
Sbjct:   42 KAQVELFRAIKSGDLTKARKAYDKGANVNWPLDRWIMGGREHWGLRVQVKPLGIYLGFSARESWRVPDGEGANRGDTLVMVALKCRKQEEAAFLLGCDRLNRNCLNEAGNSVADIARATGQEFLL 166
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_976.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZF57_9STRA8.520e-3347.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G360_ECTSI1.150e-933.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_976contigC-australica_Contig_976:5858..8259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size926
Hectar predicted targeting categoryother localisation
Exons8
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_004610.1
Cds size810
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_976.3.1prot_C-australica_Contig_976.3.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_976 5974..8259 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588842.4987078-UTR-C-australica_Contig_976:5857..59731682588842.4987078-UTR-C-australica_Contig_976:5857..5973Chrysoparadoxa australica CS_1217UTRC-australica_Contig_976 5858..5973 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588842.5100703-CDS-C-australica_Contig_976:5973..60061682588842.5100703-CDS-C-australica_Contig_976:5973..6006Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 5974..6006 +
1682588842.5204427-CDS-C-australica_Contig_976:6189..62521682588842.5204427-CDS-C-australica_Contig_976:6189..6252Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 6190..6252 +
1682588842.530603-CDS-C-australica_Contig_976:6404..64851682588842.530603-CDS-C-australica_Contig_976:6404..6485Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 6405..6485 +
1682588842.5403936-CDS-C-australica_Contig_976:6706..68951682588842.5403936-CDS-C-australica_Contig_976:6706..6895Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 6707..6895 +
1682588842.550441-CDS-C-australica_Contig_976:7112..71971682588842.550441-CDS-C-australica_Contig_976:7112..7197Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 7113..7197 +
1682588842.5601208-CDS-C-australica_Contig_976:7451..75161682588842.5601208-CDS-C-australica_Contig_976:7451..7516Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 7452..7516 +
1682588842.569557-CDS-C-australica_Contig_976:7762..78751682588842.569557-CDS-C-australica_Contig_976:7762..7875Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 7763..7875 +
1682588842.579184-CDS-C-australica_Contig_976:8078..82591682588842.579184-CDS-C-australica_Contig_976:8078..8259Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 8079..8259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_976.3.1

>prot_C-australica_Contig_976.3.1 ID=prot_C-australica_Contig_976.3.1|Name=mRNA_C-australica_Contig_976.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=270bp
MPLSDAQREAQIDLFEAAKVSDVAACQIAVDKGADINFQYRGGAVMACQG
WRLRMGGVEWGLQEWDAPEGVIPEGGDTLLMIAIKCRLAPVVAWIQQLDQ
LRKTQKNNAGKTAEDVAREYGEEQLIDNDDLGALPASPVSRSKVGVMESP
SGAPVLQTSMSQSGRYVDLRNQEEQTFHVSGPYSAWSPTKRGSTDSASTA
AGSLCDQPQSPSMTDENAVLRREVYKLRDTVSMLSKQQLKSEKMINDLSN
RLKAVEASQMPLAKPNWMT*
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mRNA from alignment at C-australica_Contig_976:5858..8259+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_976.3.1 ID=mRNA_C-australica_Contig_976.3.1|Name=mRNA_C-australica_Contig_976.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2402bp|location=Sequence derived from alignment at C-australica_Contig_976:5858..8259+ (Chrysoparadoxa australica CS_1217)
CAAAGACTGCCCTCTCCCGTAGAAGCCGCAAGAGCCAACCCACCAAGAAG
CCAGGAGCAACCCACACAGCCTGAGCGAAGAGAGACAGCATAGCGCGGAG
AAGTTGAGAAAGCACGATGCCCTTGTCGGATGCGCAAAGAGAGGCTCAGG
TAACAGCTGGCTTTTGCTCTTACCCAGCTCTCCTTATTTATTTCCTCTCC
CATTCCCCCCCTCTCCTCTCGTCCTCCTTCTCCTTCCCTCCACATTTCGA
TACAATCTCGCTCACCTGCCAATCACGTCTGCTTGCTCCTTCCTGTTGGC
GCTCACCCCTCTTTTGATCACTTCTCTCACAGATTGATTTGTTTGAAGCC
GCAAAAGTATCTGATGTAGCAGCGTGCCAAATTGCTGTTGACAAGGCAAG
GCACATCCTGACCTGCGCCACATGCTCACTACTCCTTAATCTGCCTGCTT
GAAGCACGTCTCTTTTGTTGAACACTCGCAGTTCGTTTGCTTAAGCACAA
ACATTTACAGTCACCCTTATTTGACCCCTTCCCATCCCATCTCATAGGGT
GCTGATATCAACTTTCAGTACAGAGGTGGTGCAGTAATGGCATGCCAAGG
ATGGAGGCTAAGGATGGGTGGCGTTGAAGTAAGTTTTTGGGACGTAATGA
ACTGAGAAAATGAGTGACTGAATTAGTGACTGAAGGAGTAGATTCCAGAG
GCATGCTACGGCCTTGATACAGTGCAAGCAGCCACCTCCACCAAATAAGT
GTTTCACTGCTACATGAATCTATTACTTCTACGATTTCACTATCAGCCAC
ATATCACTCAACTCTTTTGATCCTTGCCACTCCTTGCTGGCTCACACAGT
GGGGGCTACAAGAGTGGGATGCACCTGAGGGTGTGATACCAGAAGGCGGT
GACACTCTTCTGATGATAGCCATTAAGTGTAGACTGGCACCAGTTGTTGC
ATGGATACAGCAGCTGGATCAACTAAGGAAAACCCAGAAGAATAACGCTG
GGAAGACAGCAGAGGATGTGGCACGGGAATATGGCGAGGTAGTAGGATTT
CCAGGATTTCCACATTTCATTTGAACTCTTCATATTTTTGGTCTTTACTC
TGTCGGATGGCGTTTGAGCTCTGAGCACTAGTATGCTCCTGCATGTGGAG
CTGGCTGTTGTCTGCACCTCACTTACATGCCACTGCCACTGTCAGCAGCT
AGTACCTGGACGCCAACAAATTCTCATTGCTTCCTTCTTTTCTCTCCCCT
TCCAGGAGCAACTGATTGACAATGATGACCTTGGTGCTTTGCCTGCTAGC
CCTGTATCACGAAGTAAAGTCGGAGTGATGGAGTCACCATGTATGCTAGC
TCACTACTCAACCAACGCTGAATGCTCCCATCAATGGACTGCCTCTGCCT
CTCCTGATCACTCGCTCTATCCCATGGATTGCTCACTGCCACCGTCATAC
ACCATAGCAAGTGAATCAAATCAATTCCACACACACCAGCCAAATGTGAC
GTACAGCCCATAAAAGAACAAGTGGACGATGATCTATCTTACCTCTCTGA
CCCTTGCTCTGGCTTTCCTCATCTCATTGCTGTGTCCCCACTAGCTGGTG
CTCCAGTACTGCAGACCAGCATGTCACAGAGCGGCAGATACGTAGACCTG
AGAAATCAGGTTGCTAAAGCTCCTCGCTCTGAAACCGTGCCACAACTGTA
CCACAAGTTAACCCCTATCTACATGCCCTTGGATTGTGAGAATGCTATAG
TACCCCATAAGCTGGAGGATTAACTTTGACGCGAGCTGTAACCCTGACCC
TGAGCTGATGTCACTGAATTCCTGCTTGCATAAGTTATCCTGGTATTGCT
TCTCTAAGTTTTCTAACCTGCCTCTCCTCTCATTGTGTCTGATTATGTAT
GATAGGAAGAGCAAACTTTCCATGTCAGCGGCCCATACTCTGCATGGAGC
CCTACAAAACGTGGCTCAACTGACAGCGCCAGCACTGCAGCTGGCAGCCT
TTGTGATCAGCCACAAAGGTATGAAAGTGAGGGGCGGAGAAAGTGGAAGA
GGCACAGGCGGGGATATTCCATAGCATTCCTGCCCCTTGGGCTATGCTAT
TACTAGTGACTCACTCACTTACTCACTTCTCATCACTCTCATGTCAAGAG
ACTAAACGGCTCTGGCCTCACCAGACTTAACTAACTTGCGACCTTGGATT
TGATTTGATTTATCCTTTCAGCCCTAGCATGACGGATGAGAATGCGGTGC
TAAGGAGAGAAGTGTACAAGCTACGTGATACAGTTTCAATGCTCTCTAAG
CAGCAGCTCAAGAGTGAGAAGATGATTAATGACTTGAGCAATCGTCTCAA
GGCGGTTGAAGCAAGTCAGATGCCTCTTGCTAAGCCCAACTGGATGACGT
GA
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Coding sequence (CDS) from alignment at C-australica_Contig_976:5858..8259+

>mRNA_C-australica_Contig_976.3.1 ID=mRNA_C-australica_Contig_976.3.1|Name=mRNA_C-australica_Contig_976.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=810bp|location=Sequence derived from alignment at C-australica_Contig_976:5858..8259+ (Chrysoparadoxa australica CS_1217)
ATGCCCTTGTCGGATGCGCAAAGAGAGGCTCAGATTGATTTGTTTGAAGC
CGCAAAAGTATCTGATGTAGCAGCGTGCCAAATTGCTGTTGACAAGGGTG
CTGATATCAACTTTCAGTACAGAGGTGGTGCAGTAATGGCATGCCAAGGA
TGGAGGCTAAGGATGGGTGGCGTTGAATGGGGGCTACAAGAGTGGGATGC
ACCTGAGGGTGTGATACCAGAAGGCGGTGACACTCTTCTGATGATAGCCA
TTAAGTGTAGACTGGCACCAGTTGTTGCATGGATACAGCAGCTGGATCAA
CTAAGGAAAACCCAGAAGAATAACGCTGGGAAGACAGCAGAGGATGTGGC
ACGGGAATATGGCGAGGAGCAACTGATTGACAATGATGACCTTGGTGCTT
TGCCTGCTAGCCCTGTATCACGAAGTAAAGTCGGAGTGATGGAGTCACCA
TCTGGTGCTCCAGTACTGCAGACCAGCATGTCACAGAGCGGCAGATACGT
AGACCTGAGAAATCAGGAAGAGCAAACTTTCCATGTCAGCGGCCCATACT
CTGCATGGAGCCCTACAAAACGTGGCTCAACTGACAGCGCCAGCACTGCA
GCTGGCAGCCTTTGTGATCAGCCACAAAGCCCTAGCATGACGGATGAGAA
TGCGGTGCTAAGGAGAGAAGTGTACAAGCTACGTGATACAGTTTCAATGC
TCTCTAAGCAGCAGCTCAAGAGTGAGAAGATGATTAATGACTTGAGCAAT
CGTCTCAAGGCGGTTGAAGCAAGTCAGATGCCTCTTGCTAAGCCCAACTG
GATGACGTGA
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