mRNA_C-australica_Contig_10341.2.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10341.2.1 vs. uniprot
Match: UPI000399FF7F (OmpA family protein n=1 Tax=Balneola vulgaris TaxID=287535 RepID=UPI000399FF7F) HSP 1 Score: 120 bits (300), Expect = 9.370e-31 Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 Query: 1 YNMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVELTLSYN 180 YNMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVELTLSYN Sbjct: 388 YNMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVELTLSYN 447
BLAST of mRNA_C-australica_Contig_10341.2.1 vs. uniprot
Match: A0A2D4ZRJ8_9BACT (Cell envelope biogenesis protein OmpA n=3 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A2D4ZRJ8_9BACT) HSP 1 Score: 98.2 bits (243), Expect = 1.290e-22 Identity = 49/60 (81.67%), Postives = 52/60 (86.67%), Query Frame = 1 Query: 1 YNMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVELTLSYN 180 YNM+LS +RA +VK YLV KGI SSRI TEGYGETKPIASN SKDGKTRNRRVEL LSYN Sbjct: 405 YNMKLSKERAQSVKSYLVHKGISSSRITTEGYGETKPIASNASKDGKTRNRRVELKLSYN 464
BLAST of mRNA_C-australica_Contig_10341.2.1 vs. uniprot
Match: UPI0003048956 (OmpA family protein n=1 Tax=Pedobacter arcticus TaxID=752140 RepID=UPI0003048956) HSP 1 Score: 83.2 bits (204), Expect = 3.300e-17 Identity = 37/55 (67.27%), Postives = 48/55 (87.27%), Query Frame = 1 Query: 1 YNMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVEL 165 YNMQLS+DRANAVK YLV+ G+D+ +I T+GYGET+PIASNT+++G+ NRRVE Sbjct: 426 YNMQLSLDRANAVKTYLVNSGVDAKKIATKGYGETRPIASNTTEEGRVANRRVEF 480
BLAST of mRNA_C-australica_Contig_10341.2.1 vs. uniprot
Match: A0A0B8YFD2_9SPHI (Outer membrane porin F n=5 Tax=Pedobacter TaxID=84567 RepID=A0A0B8YFD2_9SPHI) HSP 1 Score: 82.8 bits (203), Expect = 4.520e-17 Identity = 36/55 (65.45%), Postives = 48/55 (87.27%), Query Frame = 1 Query: 1 YNMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVEL 165 YNMQLS+DRANAVK YLV+ G+D+ RI T+GYGE++PIASN +++G+ +NRRVE Sbjct: 426 YNMQLSVDRANAVKTYLVNSGVDAKRISTKGYGESRPIASNATEEGRVKNRRVEF 480
BLAST of mRNA_C-australica_Contig_10341.2.1 vs. uniprot
Match: A0A4U1C5L7_9SPHI (OmpA family protein n=1 Tax=Pedobacter cryophilus TaxID=2571271 RepID=A0A4U1C5L7_9SPHI) HSP 1 Score: 82.4 bits (202), Expect = 6.180e-17 Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 1 Query: 1 YNMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVEL 165 YNMQLSIDRANAVK YLV+ G+D+ R+ T+GYGET+PIASN +++G+ NRRVE Sbjct: 424 YNMQLSIDRANAVKTYLVNSGVDAKRVMTKGYGETRPIASNATEEGRVANRRVEF 478
BLAST of mRNA_C-australica_Contig_10341.2.1 vs. uniprot
Match: UPI00190CCFB5 (OmpA family protein n=1 Tax=Pedobacter segetis TaxID=2793069 RepID=UPI00190CCFB5) HSP 1 Score: 82.4 bits (202), Expect = 6.190e-17 Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 1 Query: 1 YNMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVEL 165 YNMQLSIDRANAVK YLV+ G+D+ RI T+GYGET+PIASN +++G+ NRRVE Sbjct: 425 YNMQLSIDRANAVKTYLVNSGVDAKRIATKGYGETRPIASNATEEGRELNRRVEF 479
BLAST of mRNA_C-australica_Contig_10341.2.1 vs. uniprot
Match: A0A419S8H7_9SPHI (Flagellar motor protein MotB n=1 Tax=Pelobium manganitolerans TaxID=1842495 RepID=A0A419S8H7_9SPHI) HSP 1 Score: 82.0 bits (201), Expect = 8.500e-17 Identity = 36/55 (65.45%), Postives = 47/55 (85.45%), Query Frame = 1 Query: 1 YNMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVEL 165 YNMQLSIDRANAVK YLV+ G+D+ ++ T+GYGET+PIASN +++G+ NRRVE Sbjct: 427 YNMQLSIDRANAVKTYLVNSGVDAKKVSTKGYGETRPIASNATEEGRVANRRVEF 481
BLAST of mRNA_C-australica_Contig_10341.2.1 vs. uniprot
Match: UPI0019ADF8E2 (OmpA family protein n=1 Tax=Pseudopedobacter sp. TaxID=1936787 RepID=UPI0019ADF8E2) HSP 1 Score: 81.6 bits (200), Expect = 1.170e-16 Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 1 Query: 1 YNMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVEL 165 YNMQLSIDRANAVK YLV+ G+D+ +I T+GYGET+PIASN +++G+ NRRVE Sbjct: 429 YNMQLSIDRANAVKTYLVNSGVDAKKIATKGYGETRPIASNATEEGRIANRRVEF 483
BLAST of mRNA_C-australica_Contig_10341.2.1 vs. uniprot
Match: UPI001991B4E1 (OmpA family protein n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=UPI001991B4E1) HSP 1 Score: 75.1 bits (183), Expect = 1.410e-16 Identity = 33/59 (55.93%), Postives = 47/59 (79.66%), Query Frame = 1 Query: 4 NMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVELTLSYN 180 N++LS DRA+AVK YL+SKG+ SR+ +GYGE+KP++SN +++GK NRRVE T+ N Sbjct: 10 NLKLSSDRADAVKAYLISKGVSDSRVTAKGYGESKPLSSNDTEEGKQNNRRVEFTILKN 68
BLAST of mRNA_C-australica_Contig_10341.2.1 vs. uniprot
Match: A0A1F4C4V5_9PROT (OmpA-like domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_64_23 TaxID=1797499 RepID=A0A1F4C4V5_9PROT) HSP 1 Score: 78.6 bits (192), Expect = 2.120e-16 Identity = 35/57 (61.40%), Postives = 49/57 (85.96%), Query Frame = 1 Query: 1 YNMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVELTL 171 YN +LS+ RAN+VK YLVSKGI+++RI TEG GET+P++SN +KDG+ +NRRVE+ + Sbjct: 159 YNQKLSVRRANSVKNYLVSKGIEANRIYTEGKGETQPVSSNKTKDGRAKNRRVEIEV 215 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10341.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10341.2.1 >prot_C-australica_Contig_10341.2.1 ID=prot_C-australica_Contig_10341.2.1|Name=mRNA_C-australica_Contig_10341.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=59bp MQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRback to top mRNA from alignment at C-australica_Contig_10341:643..825- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10341.2.1 ID=mRNA_C-australica_Contig_10341.2.1|Name=mRNA_C-australica_Contig_10341.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=183bp|location=Sequence derived from alignment at C-australica_Contig_10341:643..825- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10341:643..825- >mRNA_C-australica_Contig_10341.2.1 ID=mRNA_C-australica_Contig_10341.2.1|Name=mRNA_C-australica_Contig_10341.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=177bp|location=Sequence derived from alignment at C-australica_Contig_10341:643..825- (Chrysoparadoxa australica CS_1217)back to top |