mRNA_C-australica_Contig_1032.7.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1032.7.1
Unique NamemRNA_C-australica_Contig_1032.7.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1032.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1032contigC-australica_Contig_1032:12010..12782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size480
Hectar predicted targeting categoryother localisation
Exons3
Cds size408
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586769.8404405-UTR-C-australica_Contig_1032:12009..120451682586769.8404405-UTR-C-australica_Contig_1032:12009..12045Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1032 12010..12045 +
1682586769.8493404-UTR-C-australica_Contig_1032:12217..122521682586769.8493404-UTR-C-australica_Contig_1032:12217..12252Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1032 12218..12252 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586769.8581088-CDS-C-australica_Contig_1032:12252..126101682586769.8581088-CDS-C-australica_Contig_1032:12252..12610Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1032 12253..12610 +
1682586769.8689663-CDS-C-australica_Contig_1032:12732..127821682586769.8689663-CDS-C-australica_Contig_1032:12732..12782Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1032 12733..12782 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1032.7.1prot_C-australica_Contig_1032.7.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1032 12253..12782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1032.7.1

>prot_C-australica_Contig_1032.7.1 ID=prot_C-australica_Contig_1032.7.1|Name=mRNA_C-australica_Contig_1032.7.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=136bp
MEPGMGTPSWRQRIINRLSMGPAQDSQANPVSEAEGEGEAASGNEAEVDM
SKSEVADEAHSSEDEDNDREPTPGASEPDEAWNKEEEEEVDQESVEGNIG
SLNLLSPSQANEEHFESDQEAISFMEMPSHLPPRMT
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mRNA from alignment at C-australica_Contig_1032:12010..12782+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1032.7.1 ID=mRNA_C-australica_Contig_1032.7.1|Name=mRNA_C-australica_Contig_1032.7.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=773bp|location=Sequence derived from alignment at C-australica_Contig_1032:12010..12782+ (Chrysoparadoxa australica CS_1217)
GGCACAAGGGACAAAGGAGACAAGGGCAGGAATCGGGTACCGTAGGATTG
TAGTGGCTGGTTGGTAGGCAACAGTACAACAAGGAGAAAAAGGGCGCCGC
TCAGTTGCTCGTCTGGAAGCCACCGTCCAGGGCATGTAGATAGGCTGGGT
AGCGCTGTAGGATCGCTCTCATACCTCTATCCTCACCCTGCCCTTCTCTC
TCACCTAGGTTGGAGCTATTCCAGCTCGATAGCACAATAGAACATGGAGC
CGGGGATGGGGACTCCGTCTTGGAGGCAGCGCATCATAAACCGCCTCAGC
ATGGGACCGGCACAAGACAGCCAGGCTAATCCAGTGTCTGAAGCTGAAGG
TGAAGGTGAAGCCGCTTCCGGGAATGAAGCTGAAGTGGACATGTCCAAGT
CCGAAGTTGCAGATGAAGCACACAGCTCCGAGGATGAGGATAATGACAGA
GAGCCCACACCTGGGGCAAGTGAGCCCGACGAGGCATGGAACAAGGAGGA
AGAAGAGGAGGTGGATCAGGAAAGCGTTGAGGGCAATATAGGGTCACTTA
ATCTACTGTCACCATCCCAAGCTAATGAAGAGCACTTTGAGTCTGACCAA
GGTGAGCCCCTCTCCCAGCCGGTGCCAAAGATACATGATGCAGGCCCCCC
TGATCACCTAAGCCTCTTTCCTTAAACTCTCAACTCAGTCCCTTCTCCTT
GTCTTTATCATCCGTTCTGCCAGAGGCAATATCTTTCATGGAGATGCCAT
CACATTTACCCCCTCGAATGACG
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Coding sequence (CDS) from alignment at C-australica_Contig_1032:12010..12782+

>mRNA_C-australica_Contig_1032.7.1 ID=mRNA_C-australica_Contig_1032.7.1|Name=mRNA_C-australica_Contig_1032.7.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=408bp|location=Sequence derived from alignment at C-australica_Contig_1032:12010..12782+ (Chrysoparadoxa australica CS_1217)
ATGGAGCCGGGGATGGGGACTCCGTCTTGGAGGCAGCGCATCATAAACCG
CCTCAGCATGGGACCGGCACAAGACAGCCAGGCTAATCCAGTGTCTGAAG
CTGAAGGTGAAGGTGAAGCCGCTTCCGGGAATGAAGCTGAAGTGGACATG
TCCAAGTCCGAAGTTGCAGATGAAGCACACAGCTCCGAGGATGAGGATAA
TGACAGAGAGCCCACACCTGGGGCAAGTGAGCCCGACGAGGCATGGAACA
AGGAGGAAGAAGAGGAGGTGGATCAGGAAAGCGTTGAGGGCAATATAGGG
TCACTTAATCTACTGTCACCATCCCAAGCTAATGAAGAGCACTTTGAGTC
TGACCAAGAGGCAATATCTTTCATGGAGATGCCATCACATTTACCCCCTC
GAATGACG
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