mRNA_C-australica_Contig_1032.10.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1032.10.1
Unique NamemRNA_C-australica_Contig_1032.10.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1032.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1032contigC-australica_Contig_1032:15673..16669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size580
Hectar predicted targeting categoryother localisation
Exons3
Cds size579
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586769.9354064-CDS-C-australica_Contig_1032:15672..157871682586769.9354064-CDS-C-australica_Contig_1032:15672..15787Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1032 15673..15787 +
1682586769.9497173-CDS-C-australica_Contig_1032:16008..162081682586769.9497173-CDS-C-australica_Contig_1032:16008..16208Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1032 16009..16208 +
1682586769.9623666-CDS-C-australica_Contig_1032:16405..166691682586769.9623666-CDS-C-australica_Contig_1032:16405..16669Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1032 16406..16669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1032.10.1prot_C-australica_Contig_1032.10.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1032 15673..16669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1032.10.1

>prot_C-australica_Contig_1032.10.1 ID=prot_C-australica_Contig_1032.10.1|Name=mRNA_C-australica_Contig_1032.10.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=193bp
ADGDGDSIEEGAEEKVYIGGEAVDDMLVATLRAHLEDFGLPTGGRKAQLL
QRLKEALASSAQGEDPAAQPLEEDKGEQGLEKDEGEQDLEEEGVDEEEPL
ELKYKGELIASMSLKAAQQHLRDWGLNHQGRKAAVLERLTAVAVGMSGST
YLEGLSAAELRAHLAALGESAAGSKAVMRARLSDAVSRQAEEE
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mRNA from alignment at C-australica_Contig_1032:15673..16669+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1032.10.1 ID=mRNA_C-australica_Contig_1032.10.1|Name=mRNA_C-australica_Contig_1032.10.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=997bp|location=Sequence derived from alignment at C-australica_Contig_1032:15673..16669+ (Chrysoparadoxa australica CS_1217)
GCTGATGGTGATGGAGATTCTATTGAGGAGGGAGCTGAGGAGAAGGTGTA
TATTGGGGGTGAGGCTGTGGATGACATGCTTGTAGCCACACTCAGGGCCC
ATCTTGAAGACTTTGGTGAGTGATCCAGGACTGAAAAGCTCTTTGAGTGA
CATCCAAGAAAACGTGCCATTTGGGCCAATGCATTCATGACCCACCCTTT
CCCAACTGCCTGAATGCGTACCATTTTCTGCCAAGGTCTAGCTGATGTAC
TTTATTCCCCAGCTTCTTTGATGCTGGGGGATGTAACGATATGGCAACGA
GTCCCCCCTCACCTCACCCTCTTCATATGCCGCCAGGTCTGCCTACTGGA
GGTAGAAAGGCTCAGCTACTGCAACGGCTAAAGGAAGCTCTGGCATCCTC
AGCACAAGGTGAAGATCCTGCAGCTCAGCCGCTGGAGGAGGATAAGGGGG
AGCAAGGCTTGGAGAAGGACGAGGGGGAGCAAGACTTGGAAGAGGAGGGG
GTTGATGAGGAGGAGCCTTTGGAGCTCAAGTATAAGGTATGTATATGGCT
TGTGCTAGTGCAACTGCTACATTCCCCATTTTATTCCTGCTGCTGCCTAG
CACCACCACACGCTTTGCCTGTTGGTAATAAGCGTGTTCAATAAAGCGGT
TACAGCTTTCCCAGCACTTGATAACATAGATACCTAAGACGCCTAGGATG
CCTAATGCAGCAGCCATTCCGACCATGTTGCAGGGTGAGCTCATCGCTTC
TATGTCACTGAAGGCGGCTCAGCAGCACCTCAGGGACTGGGGTCTCAACC
ATCAAGGCAGAAAAGCTGCAGTGCTGGAACGTTTAACGGCTGTGGCAGTC
GGGATGAGTGGGAGCACTTACCTCGAGGGCCTCTCCGCTGCTGAGCTCAG
GGCACACCTGGCTGCGCTGGGCGAGTCGGCCGCTGGATCCAAGGCTGTGA
TGAGGGCGAGGCTGTCAGATGCGGTGAGCAGGCAGGCTGAGGAGGAG
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Coding sequence (CDS) from alignment at C-australica_Contig_1032:15673..16669+

>mRNA_C-australica_Contig_1032.10.1 ID=mRNA_C-australica_Contig_1032.10.1|Name=mRNA_C-australica_Contig_1032.10.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=579bp|location=Sequence derived from alignment at C-australica_Contig_1032:15673..16669+ (Chrysoparadoxa australica CS_1217)
GCTGATGGTGATGGAGATTCTATTGAGGAGGGAGCTGAGGAGAAGGTGTA
TATTGGGGGTGAGGCTGTGGATGACATGCTTGTAGCCACACTCAGGGCCC
ATCTTGAAGACTTTGGTCTGCCTACTGGAGGTAGAAAGGCTCAGCTACTG
CAACGGCTAAAGGAAGCTCTGGCATCCTCAGCACAAGGTGAAGATCCTGC
AGCTCAGCCGCTGGAGGAGGATAAGGGGGAGCAAGGCTTGGAGAAGGACG
AGGGGGAGCAAGACTTGGAAGAGGAGGGGGTTGATGAGGAGGAGCCTTTG
GAGCTCAAGTATAAGGGTGAGCTCATCGCTTCTATGTCACTGAAGGCGGC
TCAGCAGCACCTCAGGGACTGGGGTCTCAACCATCAAGGCAGAAAAGCTG
CAGTGCTGGAACGTTTAACGGCTGTGGCAGTCGGGATGAGTGGGAGCACT
TACCTCGAGGGCCTCTCCGCTGCTGAGCTCAGGGCACACCTGGCTGCGCT
GGGCGAGTCGGCCGCTGGATCCAAGGCTGTGATGAGGGCGAGGCTGTCAG
ATGCGGTGAGCAGGCAGGCTGAGGAGGAG
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