Homology
BLAST of mRNA_C-australica_Contig_1028.1.1 vs. uniprot
Match: A0A835ZDW7_9STRA (Bromo domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDW7_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 3.130e-16 Identity = 37/92 (40.22%), Postives = 59/92 (64.13%), Query Frame = 1 Query: 127 FDLYDGSGTEKMRILDSFALYTLDGKPVPLEALDRVKQGENFVGFGTVVEPLSDDASARLEQLENKMRGKMPSCTPREDSHTAVQLSAMKAV 402
+D+Y+ GT+K+R+LD+FALYT DGK VP E +D+VK G + +GT VE + +D R+ L +K +G+ P C P + ++ + KA+
Sbjct: 43 YDMYEAGGTDKLRLLDNFALYTHDGKMVPFEDIDKVKDGVPLIAYGTCVESICEDGRQRVSLLHSKTKGRPPPCVPIPRADSSSSTNGTKAL 134
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Stop | 0 |
Start | 1 |
Model size | 504 |
Hectar predicted targeting category | other localisation |
Exons | 4 |
Cds size | 504 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1682586763.9984553-CDS-C-australica_Contig_1028:957..1133 | 1682586763.9984553-CDS-C-australica_Contig_1028:957..1133 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1028 958..1133 + |
1682586764.0064569-CDS-C-australica_Contig_1028:1234..1299 | 1682586764.0064569-CDS-C-australica_Contig_1028:1234..1299 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1028 1235..1299 + |
1682586764.014215-CDS-C-australica_Contig_1028:1375..1530 | 1682586764.014215-CDS-C-australica_Contig_1028:1375..1530 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1028 1376..1530 + |
1682586764.0233269-CDS-C-australica_Contig_1028:1646..1754 | 1682586764.0233269-CDS-C-australica_Contig_1028:1646..1754 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1028 1647..1754 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1028.1.1 >prot_C-australica_Contig_1028.1.1 ID=prot_C-australica_Contig_1028.1.1|Name=mRNA_C-australica_Contig_1028.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=168bp
MYLNSSSCLGRQEARLRDADPLAQGGSGAEDEEAEDGPGLHEFDLYDGSG TEKMRILDSFALYTLDGKPVPLEALDRVKQGENFVGFGTVVEPLSDDASA RLEQLENKMRGKMPSCTPREDSHTAVQLSAMKAVFGDSDDELEGGLDSKK ARGEMQQGPVKTSGLKLT back to topmRNA from alignment at C-australica_Contig_1028:958..1754+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-australica_Contig_1028.1.1 ID=mRNA_C-australica_Contig_1028.1.1|Name=mRNA_C-australica_Contig_1028.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=797bp|location=Sequence derived from alignment at C-australica_Contig_1028:958..1754+ (Chrysoparadoxa australica CS_1217) ATGTACCTCAATTCAAGCAGTTGCCTGGGCAGGCAGGAGGCTCGACTGCG
TGATGCAGACCCATTAGCCCAAGGAGGCAGTGGTGCTGAGGATGAGGAGG
CCGAGGACGGCCCAGGGCTCCACGAGTTTGACCTCTACGATGGCTCAGGG
ACTGAGAAGATGCGTATCTTGGACAGGTCTAATCATGCCAGCCTTGCTCA
AGCCATCTCTAGGCGATCACCCTGCCCTGCTCAGCAATAGCTCTTGGTCT
AACATATCTCTTTGATCCCTGCCTCAGCTTTGCCTTATACACCCTGGATG
GCAAACCTGTGCCCCTTGAAGCGCTGGACAGGGTGAAGCAAGGTCAGTTG
TGCTATTCTGCCCTTTGCATCTGCCTTTAGCTGTGGTGGCTCACAAGACG
TTGCCTTTCCCCACTCAGGCGAAAATTTTGTAGGGTTTGGAACCGTGGTG
GAGCCTCTGAGTGATGATGCCAGTGCCCGGCTGGAGCAGCTGGAGAACAA
GATGCGAGGGAAGATGCCATCTTGCACACCACGCGAGGACAGTCACACTG
CTGTACAGCTCAGTGCCATGAAGGTGAGGAGGAGAACGCTGCAGCCAGTG
TGTTTGTGGGGGGTACGTGAGGTGTTGCTCTCTGCCGTCCCTTGGCCTGC
TCCTTGCTTACTGTAGGCCACAACCATTCTGCTCCATAGGCTGTGTTTGG
CGATAGCGACGATGAGCTTGAGGGAGGTCTGGACAGCAAGAAAGCAAGAG
GAGAAATGCAGCAAGGACCGGTCAAAACCTCTGGACTAAAGCTTACC back to topCoding sequence (CDS) from alignment at C-australica_Contig_1028:958..1754+ >mRNA_C-australica_Contig_1028.1.1 ID=mRNA_C-australica_Contig_1028.1.1|Name=mRNA_C-australica_Contig_1028.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=504bp|location=Sequence derived from alignment at C-australica_Contig_1028:958..1754+ (Chrysoparadoxa australica CS_1217) ATGTACCTCAATTCAAGCAGTTGCCTGGGCAGGCAGGAGGCTCGACTGCG TGATGCAGACCCATTAGCCCAAGGAGGCAGTGGTGCTGAGGATGAGGAGG CCGAGGACGGCCCAGGGCTCCACGAGTTTGACCTCTACGATGGCTCAGGG ACTGAGAAGATGCGTATCTTGGACAGCTTTGCCTTATACACCCTGGATGG CAAACCTGTGCCCCTTGAAGCGCTGGACAGGGTGAAGCAAGGCGAAAATT TTGTAGGGTTTGGAACCGTGGTGGAGCCTCTGAGTGATGATGCCAGTGCC CGGCTGGAGCAGCTGGAGAACAAGATGCGAGGGAAGATGCCATCTTGCAC ACCACGCGAGGACAGTCACACTGCTGTACAGCTCAGTGCCATGAAGGCTG TGTTTGGCGATAGCGACGATGAGCTTGAGGGAGGTCTGGACAGCAAGAAA GCAAGAGGAGAAATGCAGCAAGGACCGGTCAAAACCTCTGGACTAAAGCT TACC back to top
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