mRNA_C-australica_Contig_1028.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1028.1.1
Unique NamemRNA_C-australica_Contig_1028.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_1028.1.1 vs. uniprot
Match: A0A835ZDW7_9STRA (Bromo domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDW7_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.130e-16
Identity = 37/92 (40.22%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:  127 FDLYDGSGTEKMRILDSFALYTLDGKPVPLEALDRVKQGENFVGFGTVVEPLSDDASARLEQLENKMRGKMPSCTPREDSHTAVQLSAMKAV 402
            +D+Y+  GT+K+R+LD+FALYT DGK VP E +D+VK G   + +GT VE + +D   R+  L +K +G+ P C P   + ++   +  KA+
Sbjct:   43 YDMYEAGGTDKLRLLDNFALYTHDGKMVPFEDIDKVKDGVPLIAYGTCVESICEDGRQRVSLLHSKTKGRPPPCVPIPRADSSSSTNGTKAL 134
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1028.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZDW7_9STRA3.130e-1640.22Bromo domain-containing protein n=1 Tax=Tribonema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1028contigC-australica_Contig_1028:958..1754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size504
Hectar predicted targeting categoryother localisation
Exons4
Cds size504
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586763.9984553-CDS-C-australica_Contig_1028:957..11331682586763.9984553-CDS-C-australica_Contig_1028:957..1133Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1028 958..1133 +
1682586764.0064569-CDS-C-australica_Contig_1028:1234..12991682586764.0064569-CDS-C-australica_Contig_1028:1234..1299Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1028 1235..1299 +
1682586764.014215-CDS-C-australica_Contig_1028:1375..15301682586764.014215-CDS-C-australica_Contig_1028:1375..1530Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1028 1376..1530 +
1682586764.0233269-CDS-C-australica_Contig_1028:1646..17541682586764.0233269-CDS-C-australica_Contig_1028:1646..1754Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1028 1647..1754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1028.1.1prot_C-australica_Contig_1028.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1028 958..1754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1028.1.1

>prot_C-australica_Contig_1028.1.1 ID=prot_C-australica_Contig_1028.1.1|Name=mRNA_C-australica_Contig_1028.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=168bp
MYLNSSSCLGRQEARLRDADPLAQGGSGAEDEEAEDGPGLHEFDLYDGSG
TEKMRILDSFALYTLDGKPVPLEALDRVKQGENFVGFGTVVEPLSDDASA
RLEQLENKMRGKMPSCTPREDSHTAVQLSAMKAVFGDSDDELEGGLDSKK
ARGEMQQGPVKTSGLKLT
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mRNA from alignment at C-australica_Contig_1028:958..1754+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1028.1.1 ID=mRNA_C-australica_Contig_1028.1.1|Name=mRNA_C-australica_Contig_1028.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=797bp|location=Sequence derived from alignment at C-australica_Contig_1028:958..1754+ (Chrysoparadoxa australica CS_1217)
ATGTACCTCAATTCAAGCAGTTGCCTGGGCAGGCAGGAGGCTCGACTGCG
TGATGCAGACCCATTAGCCCAAGGAGGCAGTGGTGCTGAGGATGAGGAGG
CCGAGGACGGCCCAGGGCTCCACGAGTTTGACCTCTACGATGGCTCAGGG
ACTGAGAAGATGCGTATCTTGGACAGGTCTAATCATGCCAGCCTTGCTCA
AGCCATCTCTAGGCGATCACCCTGCCCTGCTCAGCAATAGCTCTTGGTCT
AACATATCTCTTTGATCCCTGCCTCAGCTTTGCCTTATACACCCTGGATG
GCAAACCTGTGCCCCTTGAAGCGCTGGACAGGGTGAAGCAAGGTCAGTTG
TGCTATTCTGCCCTTTGCATCTGCCTTTAGCTGTGGTGGCTCACAAGACG
TTGCCTTTCCCCACTCAGGCGAAAATTTTGTAGGGTTTGGAACCGTGGTG
GAGCCTCTGAGTGATGATGCCAGTGCCCGGCTGGAGCAGCTGGAGAACAA
GATGCGAGGGAAGATGCCATCTTGCACACCACGCGAGGACAGTCACACTG
CTGTACAGCTCAGTGCCATGAAGGTGAGGAGGAGAACGCTGCAGCCAGTG
TGTTTGTGGGGGGTACGTGAGGTGTTGCTCTCTGCCGTCCCTTGGCCTGC
TCCTTGCTTACTGTAGGCCACAACCATTCTGCTCCATAGGCTGTGTTTGG
CGATAGCGACGATGAGCTTGAGGGAGGTCTGGACAGCAAGAAAGCAAGAG
GAGAAATGCAGCAAGGACCGGTCAAAACCTCTGGACTAAAGCTTACC
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Coding sequence (CDS) from alignment at C-australica_Contig_1028:958..1754+

>mRNA_C-australica_Contig_1028.1.1 ID=mRNA_C-australica_Contig_1028.1.1|Name=mRNA_C-australica_Contig_1028.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=504bp|location=Sequence derived from alignment at C-australica_Contig_1028:958..1754+ (Chrysoparadoxa australica CS_1217)
ATGTACCTCAATTCAAGCAGTTGCCTGGGCAGGCAGGAGGCTCGACTGCG
TGATGCAGACCCATTAGCCCAAGGAGGCAGTGGTGCTGAGGATGAGGAGG
CCGAGGACGGCCCAGGGCTCCACGAGTTTGACCTCTACGATGGCTCAGGG
ACTGAGAAGATGCGTATCTTGGACAGCTTTGCCTTATACACCCTGGATGG
CAAACCTGTGCCCCTTGAAGCGCTGGACAGGGTGAAGCAAGGCGAAAATT
TTGTAGGGTTTGGAACCGTGGTGGAGCCTCTGAGTGATGATGCCAGTGCC
CGGCTGGAGCAGCTGGAGAACAAGATGCGAGGGAAGATGCCATCTTGCAC
ACCACGCGAGGACAGTCACACTGCTGTACAGCTCAGTGCCATGAAGGCTG
TGTTTGGCGATAGCGACGATGAGCTTGAGGGAGGTCTGGACAGCAAGAAA
GCAAGAGGAGAAATGCAGCAAGGACCGGTCAAAACCTCTGGACTAAAGCT
TACC
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