mRNA_C-australica_Contig_10263.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10263.2.1
Unique NamemRNA_C-australica_Contig_10263.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10263.2.1 vs. uniprot
Match: A0A222E455_9RHOB (Histone deacetylase-like amidohydrolase n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E455_9RHOB)

HSP 1 Score: 332 bits (852), Expect = 4.230e-113
Identity = 167/174 (95.98%), Postives = 170/174 (97.70%), Query Frame = 1
Query:    1 FGNVAIAAKHALEAHGLSRVAVVDFDVHHGNGTQDLLWDEARTLFIGSHQMPLWPGTGGVEDRGGHDNVLNLPLXXXXXXSEMRSVWTPALSRIRAFQPELLIISAGFDAHQDDPLAQLEWNVDDFRWITRELCNLAADVCDGRVVSCLEGGYDLGALSTSGKAHVEILMEAGQ 522
            FGNVAIAAK ALEAHGL+RVAVVDFDVHHGNGTQDLLWDEAR+LFIGSHQMPLWPGTGGVEDRG HDNVLNLP XXXXXXSEMRSVWTPALSRIR FQPELLIISAGFDAHQDDPLAQLEWNVDDFRWITRELC+LAADVCDGRVVSCLEGGYDLGALSTSGKAHVEILMEAGQ
Sbjct:  134 FGNVAIAAKLALEAHGLARVAVVDFDVHHGNGTQDLLWDEARSLFIGSHQMPLWPGTGGVEDRGEHDNVLNLPXXXXXXXSEMRSVWTPALSRIRDFQPELLIISAGFDAHQDDPLAQLEWNVDDFRWITRELCDLAADVCDGRVVSCLEGGYDLGALSTSGKAHVEILMEAGQ 307          
BLAST of mRNA_C-australica_Contig_10263.2.1 vs. uniprot
Match: A0A238K6D1_9RHOB (Histone deacetylase-like amidohydrolase n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238K6D1_9RHOB)

HSP 1 Score: 310 bits (794), Expect = 2.790e-104
Identity = 145/173 (83.82%), Postives = 157/173 (90.75%), Query Frame = 1
Query:    1 FGNVAIAAKHALEAHGLSRVAVVDFDVHHGNGTQDLLWDEARTLFIGSHQMPLWPGTGGVEDRGGHDNVLNLPLXXXXXXSEMRSVWTPALSRIRAFQPELLIISAGFDAHQDDPLAQLEWNVDDFRWITRELCNLAADVCDGRVVSCLEGGYDLGALSTSGKAHVEILMEAG 519
            FGNVAIAAKHALEAHGLSRVAVVDFDVHHGNGTQDLLW+EARTLFIGSHQMPLWPGTG  ++RG HDNVLNLPL      +EMR+ W PA+SR+RAF+PELLIISAGFDAHQDDPLAQLEW+V+DFRWITRELC +A DVC GRVVSCLEGGYDL ALS SGKAHVE+LMEAG
Sbjct:  134 FGNVAIAAKHALEAHGLSRVAVVDFDVHHGNGTQDLLWNEARTLFIGSHQMPLWPGTGRPDERGAHDNVLNLPLAPGSGGAEMRAAWAPAISRLRAFEPELLIISAGFDAHQDDPLAQLEWSVEDFRWITRELCKMARDVCGGRVVSCLEGGYDLAALSASGKAHVEVLMEAG 306          
BLAST of mRNA_C-australica_Contig_10263.2.1 vs. uniprot
Match: A0A0B3SEQ3_9RHOB (Acetylspermidine deacetylase, Deacetylase n=7 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A0B3SEQ3_9RHOB)

HSP 1 Score: 301 bits (770), Expect = 1.240e-100
Identity = 150/174 (86.21%), Postives = 157/174 (90.23%), Query Frame = 1
Query:    1 FGNVAIAAKHALEAHGLSRVAVVDFDVHHGNGTQDLLWDEARTLFIGSHQMPLWPGTGGVEDRGGHDNVLNLPLXXXXXXSEMRSVWTPALSRIRAFQPELLIISAGFDAHQDDPLAQLEWNVDDFRWITRELCNLAADVCDGRVVSCLEGGYDLGALSTSGKAHVEILMEAGQ 522
            FGNVAIAAKHALE HGLSRVAVVDFDVHHGNGTQDLLWDEARTLFIGSHQMPLWPGTG  E+RG HDNV NL  XXXXXX    + WTPALSR+RAF+PELLIISAGFDAHQDDPLAQLEW V+DFRWITRELC LAAD C GRVVSCLEGGYDLGALS SGKAHVE+LMEAG+
Sbjct:  134 FGNVAIAAKHALETHGLSRVAVVDFDVHHGNGTQDLLWDEARTLFIGSHQMPLWPGTGSAEERGAHDNVQNLXXXXXXXXXXXXAAWTPALSRMRAFRPELLIISAGFDAHQDDPLAQLEWTVEDFRWITRELCALAADECGGRVVSCLEGGYDLGALSGSGKAHVELLMEAGR 307          
BLAST of mRNA_C-australica_Contig_10263.2.1 vs. uniprot
Match: UPI001C95ED94 (histone deacetylase family protein n=3 Tax=Rhodobacterales TaxID=204455 RepID=UPI001C95ED94)

HSP 1 Score: 293 bits (749), Expect = 1.920e-97
Identity = 143/174 (82.18%), Postives = 154/174 (88.51%), Query Frame = 1
Query:    1 FGNVAIAAKHALEAHGLSRVAVVDFDVHHGNGTQDLLWDEARTLFIGSHQMPLWPGTGGVEDRGGHDNVLNLPLXXXXXXSEMRSVWTPALSRIRAFQPELLIISAGFDAHQDDPLAQLEWNVDDFRWITRELCNLAADVCDGRVVSCLEGGYDLGALSTSGKAHVEILMEAGQ 522
            FGNVAIAAKHAL AHG  RVAVVDFDVHHGNGTQDLLW+E+RTLFIGSHQMPLWPGTG  ++RG HDNV NL  XXXXXX  MR+ W PA SR+RA+ P+LLIISAGFDAHQDDPLAQLEW+VDDFRWITR LC+LAAD C GRVVSCLEGGYDL ALS SGKAHVE+LMEAGQ
Sbjct:  134 FGNVAIAAKHALNAHGAERVAVVDFDVHHGNGTQDLLWNESRTLFIGSHQMPLWPGTGNADERGAHDNVQNLXXXXXXXXXXMRAAWGPAFSRLRAYNPDLLIISAGFDAHQDDPLAQLEWSVDDFRWITRALCDLAADTCGGRVVSCLEGGYDLAALSASGKAHVEVLMEAGQ 307          
BLAST of mRNA_C-australica_Contig_10263.2.1 vs. uniprot
Match: UPI0010A611A0 (histone deacetylase family protein n=1 Tax=Primorskyibacter sp. XY-301 TaxID=2562685 RepID=UPI0010A611A0)

HSP 1 Score: 285 bits (728), Expect = 2.960e-94
Identity = 127/174 (72.99%), Postives = 150/174 (86.21%), Query Frame = 1
Query:    1 FGNVAIAAKHALEAHGLSRVAVVDFDVHHGNGTQDLLWDEARTLFIGSHQMPLWPGTGGVEDRGGHDNVLNLPLXXXXXXSEMRSVWTPALSRIRAFQPELLIISAGFDAHQDDPLAQLEWNVDDFRWITRELCNLAADVCDGRVVSCLEGGYDLGALSTSGKAHVEILMEAGQ 522
            FGN A+AAKH LE HGLSRVAV+DFDVHHGNGTQDLLW+E R+LFIGSHQMPLWPG+G   +RG HDNVLNLPL      +EMR+ WTPAL R+R++ PE++++SAGFDAHQDDPLAQL W+VDDFRWIT E+C +AADVC GRVVS LEGGYDLGAL+ S KAHV++L+EAG+
Sbjct:  134 FGNAALAAKHGLERHGLSRVAVLDFDVHHGNGTQDLLWNEPRSLFIGSHQMPLWPGSGDASERGAHDNVLNLPLAPETGGAEMRAAWTPALGRLRSYAPEMIVVSAGFDAHQDDPLAQLNWSVDDFRWITGEICTIAADVCAGRVVSVLEGGYDLGALAASAKAHVDVLLEAGK 307          
BLAST of mRNA_C-australica_Contig_10263.2.1 vs. uniprot
Match: X6L1L7_9RHOB (Acetoin utilization protein n=1 Tax=Rhodobacteraceae bacterium PD-2 TaxID=1169855 RepID=X6L1L7_9RHOB)

HSP 1 Score: 267 bits (683), Expect = 2.010e-87
Identity = 131/172 (76.16%), Postives = 146/172 (84.88%), Query Frame = 1
Query:    1 FGNVAIAAKHALEAHGLSRVAVVDFDVHHGNGTQDLLWDEARTLFIGSHQMPLWPGTGGVEDRGGHDNVLNLPLXXXXXXSEMRSVWTPALSRIRAFQPELLIISAGFDAHQDDPLAQLEWNVDDFRWITRELCNLAADVCDGRVVSCLEGGYDLGALSTSGKAHVEILMEA 516
            FGN A+AAKHAL+ HGLSRVAV+DFDVHHGNGTQDLLWDEAR LFIGSHQMPLWPGTG  ++RG HDNVLN   XXXXXX      W PALSR+RA +P L+I+SAGFDAHQDDPLA L W++DDFRWITR +C++AADVC GRVVS LEGGYDL ALS S +AHVEILMEA
Sbjct:  134 FGNAAMAAKHALDVHGLSRVAVLDFDVHHGNGTQDLLWDEARALFIGSHQMPLWPGTGRADERGAHDNVLNXXXXXXXXXXXXXXAWEPALSRLRACRPGLIIVSAGFDAHQDDPLAGLNWSLDDFRWITRAICDVAADVCGGRVVSTLEGGYDLAALSASARAHVEILMEA 305          
BLAST of mRNA_C-australica_Contig_10263.2.1 vs. uniprot
Match: UPI001ADF03E7 (histone deacetylase family protein n=1 Tax=Sagittula salina TaxID=2820268 RepID=UPI001ADF03E7)

HSP 1 Score: 265 bits (677), Expect = 1.680e-86
Identity = 127/174 (72.99%), Postives = 143/174 (82.18%), Query Frame = 1
Query:    1 FGNVAIAAKHALEAHGLSRVAVVDFDVHHGNGTQDLLWDEARTLFIGSHQMPLWPGTGGVEDRGGHDNVLNLPLXXXXXXSEMRSVW-TPALSRIRAFQPELLIISAGFDAHQDDPLAQLEWNVDDFRWITRELCNLAADVCDGRVVSCLEGGYDLGALSTSGKAHVEILMEAG 519
            FG+ AIAAKHALEAHGLSRVAVVDFDVHHGNGTQDLLWDEAR L + S QMPLWPGTG  E+RGGHDNV+NLPL      +EMR+ +   A  R+RAF PEL+I+SAGFDAH+DDPLAQLEW V+DF WITRELC +A++   GRVVS LEGGYDL  LS S KAHVE+LMEAG
Sbjct:  134 FGSAAIAAKHALEAHGLSRVAVVDFDVHHGNGTQDLLWDEARALLVSSQQMPLWPGTGTPEERGGHDNVMNLPLPPGSGGAEMRARYLNEAFPRLRAFSPELIIVSAGFDAHKDDPLAQLEWEVEDFVWITRELCAIASEAAGGRVVSTLEGGYDLAGLSASAKAHVEVLMEAG 307          
BLAST of mRNA_C-australica_Contig_10263.2.1 vs. uniprot
Match: A0A0P1G8Y4_9RHOB (Histone deacetylase-like amidohydrolase n=1 Tax=Tropicibacter naphthalenivorans TaxID=441103 RepID=A0A0P1G8Y4_9RHOB)

HSP 1 Score: 262 bits (669), Expect = 2.670e-85
Identity = 120/174 (68.97%), Postives = 141/174 (81.03%), Query Frame = 1
Query:    1 FGNVAIAAKHALEAHGLSRVAVVDFDVHHGNGTQDLLWDEARTLFIGSHQMPLWPGTGGVEDRGGHDNVLNLPLXXXXXXSEMRSVWTPALSRIRAFQPELLIISAGFDAHQDDPLAQLEWNVDDFRWITRELCNLAADVCDGRVVSCLEGGYDLGALSTSGKAHVEILMEAGQ 522
            FG  A+AAK+AL+  GLSRVAVVDFDVHHGNGTQDLLWDE RTLFIGSHQMPLWPGTG  ++RG HDN+ N+PL      +EMR+ W PA++R+ AF PELLIISAGFDAH+DDPLAQL+W  +DF WITR LC++AA VC GRVVS LEGGYDL ALS + + HV+ LM A +
Sbjct:  134 FGTAALAAKYALDVKGLSRVAVVDFDVHHGNGTQDLLWDEPRTLFIGSHQMPLWPGTGTADERGAHDNIQNIPLDPGSTGTEMRAAWEPAIARLAAFNPELLIISAGFDAHKDDPLAQLDWETEDFAWITRALCDMAAKVCGGRVVSTLEGGYDLSALSAAARVHVQELMGAAR 307          
BLAST of mRNA_C-australica_Contig_10263.2.1 vs. uniprot
Match: UPI000EF54ACF (histone deacetylase family protein n=1 Tax=Tropicibacter sp. LMIT003 TaxID=2267683 RepID=UPI000EF54ACF)

HSP 1 Score: 260 bits (665), Expect = 1.050e-84
Identity = 128/172 (74.42%), Postives = 144/172 (83.72%), Query Frame = 1
Query:    1 FGNVAIAAKHALEAHGLSRVAVVDFDVHHGNGTQDLLWDEARTLFIGSHQMPLWPGTGGVEDRGGHDNVLNLPLXXXXXXSEMRSVWTPALSRIRAFQPELLIISAGFDAHQDDPLAQLEWNVDDFRWITRELCNLAADVCDGRVVSCLEGGYDLGALSTSGKAHVEILMEA 516
            FG  A+AAKHALE  GL RVAVVDFDVHHGNGTQDLLWDEAR LFIGSHQMPLWPGTG  E+RG HDNV+N+  XXXXXX  MR+ W+ A  R+RAF+PEL++ISAGFDAH DDPLAQL W V+DF W+TR LC++AAD+C G+VVS LEGGYDL ALS S KAHVE LMEA
Sbjct:  134 FGTAALAAKHALE-RGLDRVAVVDFDVHHGNGTQDLLWDEARALFIGSHQMPLWPGTGSAEERGAHDNVVNMXXXXXXXXXXMRAAWSAAFDRLRAFRPELIVISAGFDAHADDPLAQLNWQVEDFVWVTRGLCDVAADICGGKVVSTLEGGYDLSALSASAKAHVETLMEA 304          
BLAST of mRNA_C-australica_Contig_10263.2.1 vs. uniprot
Match: UPI001FF61D27 (histone deacetylase family protein n=1 Tax=Marivita sp. S6314 TaxID=2926406 RepID=UPI001FF61D27)

HSP 1 Score: 259 bits (663), Expect = 2.240e-84
Identity = 122/175 (69.71%), Postives = 141/175 (80.57%), Query Frame = 1
Query:    1 FGNVAIAAKHALEAHGLSRVAVVDFDVHHGNGTQDLLWDEARTLFIGSHQMPLWPGTGGVEDRGGHDNVLNLPLXXXXXXSEMRSVW-TPALSRIRAFQPELLIISAGFDAHQDDPLAQLEWNVDDFRWITRELCNLAADVCDGRVVSCLEGGYDLGALSTSGKAHVEILMEAGQ 522
            FGN AI AKHALEAHGLSRVAVVDFDVHHGNGTQDLLWDE R L I S QMPLWPGTG   +RG HDNVLN+PL      +EMR+ + T    R+R F PEL+I+SAGFDAHQDDPLA+L+W+ +DFRW+T+ELC LAA++CDGRVVS LEGGYDL AL+ S + HVE LMEA +
Sbjct:  134 FGNAAIGAKHALEAHGLSRVAVVDFDVHHGNGTQDLLWDEVRALIITSQQMPLWPGTGDPSERGAHDNVLNVPLPPRSGGAEMRAAYETQVFPRLREFAPELIILSAGFDAHQDDPLAELQWSTEDFRWLTQELCALAAEICDGRVVSTLEGGYDLSALAASARVHVEELMEAAK 308          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10263.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A222E455_9RHOB4.230e-11395.98Histone deacetylase-like amidohydrolase n=3 Tax=Ro... [more]
A0A238K6D1_9RHOB2.790e-10483.82Histone deacetylase-like amidohydrolase n=1 Tax=Ma... [more]
A0A0B3SEQ3_9RHOB1.240e-10086.21Acetylspermidine deacetylase, Deacetylase n=7 Tax=... [more]
UPI001C95ED941.920e-9782.18histone deacetylase family protein n=3 Tax=Rhodoba... [more]
UPI0010A611A02.960e-9472.99histone deacetylase family protein n=1 Tax=Primors... [more]
X6L1L7_9RHOB2.010e-8776.16Acetoin utilization protein n=1 Tax=Rhodobacterace... [more]
UPI001ADF03E71.680e-8672.99histone deacetylase family protein n=1 Tax=Sagittu... [more]
A0A0P1G8Y4_9RHOB2.670e-8568.97Histone deacetylase-like amidohydrolase n=1 Tax=Tr... [more]
UPI000EF54ACF1.050e-8474.42histone deacetylase family protein n=1 Tax=Tropici... [more]
UPI001FF61D272.240e-8469.71histone deacetylase family protein n=1 Tax=Marivit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10263contigC-australica_Contig_10263:304..828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog388399.SSE37_11484
Preferred nameacuC
PFAMsHist_deacetyl
Model size525
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K04768
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.48e-84
EggNOG OGsCOG0123@1|root,COG0123@2|Bacteria,1MU7P@1224|Proteobacteria,2TSX9@28211|Alphaproteobacteria
DescriptionIncluding yeast histone deacetylase and acetoin utilization protein
Cds size525
COG categoryBQ
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586763.2399595-CDS-C-australica_Contig_10263:303..8281682586763.2399595-CDS-C-australica_Contig_10263:303..828Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10263 304..828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10263.2.1prot_C-australica_Contig_10263.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10263 304..828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10263.2.1

>prot_C-australica_Contig_10263.2.1 ID=prot_C-australica_Contig_10263.2.1|Name=mRNA_C-australica_Contig_10263.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=175bp
FGNVAIAAKHALEAHGLSRVAVVDFDVHHGNGTQDLLWDEARTLFIGSHQ
MPLWPGTGGVEDRGGHDNVLNLPLPPGSGGSEMRSVWTPALSRIRAFQPE
LLIISAGFDAHQDDPLAQLEWNVDDFRWITRELCNLAADVCDGRVVSCLE
GGYDLGALSTSGKAHVEILMEAGQ*
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mRNA from alignment at C-australica_Contig_10263:304..828-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10263.2.1 ID=mRNA_C-australica_Contig_10263.2.1|Name=mRNA_C-australica_Contig_10263.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=525bp|location=Sequence derived from alignment at C-australica_Contig_10263:304..828- (Chrysoparadoxa australica CS_1217)
TTTGGCAACGTCGCCATTGCCGCGAAACACGCTCTGGAGGCGCATGGACT GAGCCGTGTGGCGGTGGTCGATTTCGACGTGCATCACGGCAATGGAACGC AGGACCTGCTGTGGGACGAAGCGCGCACATTGTTCATCGGCTCACACCAG ATGCCGCTTTGGCCGGGCACCGGCGGGGTGGAAGATCGTGGCGGGCATGA CAATGTGCTCAACCTGCCACTGCCGCCCGGATCGGGCGGGTCCGAGATGC GCAGCGTCTGGACGCCTGCGCTATCGCGCATCCGCGCCTTTCAGCCCGAA TTGCTGATCATCTCCGCCGGCTTTGACGCGCATCAAGATGATCCGCTGGC GCAGTTGGAATGGAACGTAGACGATTTCCGCTGGATCACTCGCGAATTGT GCAATCTGGCGGCAGATGTCTGCGACGGTCGCGTGGTGTCCTGCCTCGAA GGGGGCTATGACCTTGGCGCGCTCAGCACAAGCGGCAAGGCGCATGTGGA AATCTTGATGGAGGCAGGCCAATGA
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Coding sequence (CDS) from alignment at C-australica_Contig_10263:304..828-

>mRNA_C-australica_Contig_10263.2.1 ID=mRNA_C-australica_Contig_10263.2.1|Name=mRNA_C-australica_Contig_10263.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=525bp|location=Sequence derived from alignment at C-australica_Contig_10263:304..828- (Chrysoparadoxa australica CS_1217)
TTTGGCAACGTCGCCATTGCCGCGAAACACGCTCTGGAGGCGCATGGACT
GAGCCGTGTGGCGGTGGTCGATTTCGACGTGCATCACGGCAATGGAACGC
AGGACCTGCTGTGGGACGAAGCGCGCACATTGTTCATCGGCTCACACCAG
ATGCCGCTTTGGCCGGGCACCGGCGGGGTGGAAGATCGTGGCGGGCATGA
CAATGTGCTCAACCTGCCACTGCCGCCCGGATCGGGCGGGTCCGAGATGC
GCAGCGTCTGGACGCCTGCGCTATCGCGCATCCGCGCCTTTCAGCCCGAA
TTGCTGATCATCTCCGCCGGCTTTGACGCGCATCAAGATGATCCGCTGGC
GCAGTTGGAATGGAACGTAGACGATTTCCGCTGGATCACTCGCGAATTGT
GCAATCTGGCGGCAGATGTCTGCGACGGTCGCGTGGTGTCCTGCCTCGAA
GGGGGCTATGACCTTGGCGCGCTCAGCACAAGCGGCAAGGCGCATGTGGA
AATCTTGATGGAGGCAGGCCAATGA
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