mRNA_C-australica_Contig_1026.3.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1026.3.1
Unique NamemRNA_C-australica_Contig_1026.3.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_1026.3.1 vs. uniprot
Match: A0A835ZAD4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAD4_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.630e-10
Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = 1 
Query:  121 SQESAEEEVLFTSILSEPIRTLKRVSITSCGMSLC-MPIALLASSSSVPLSGQIAISATTIAVAVSTTGLLHFFTSNLIHR 360
            S  + +EE+L+   L+ PI+TLKRVSIT+C MS+   P+ L+  + SVPLSGQIA++   +  AV +T LLH+ T   +H+
Sbjct:   41 STNARKEELLYIGPLTAPIKTLKRVSITTCAMSMIGTPLLLVLGNDSVPLSGQIAVTGVALTAAVGSTALLHWCTRPYVHK 121
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1026.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZAD4_9STRA5.630e-1045.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1026contigC-australica_Contig_1026:5366..5903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size457
Hectar predicted targeting categorymitochondrion
Exons2
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_001450.1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586762.6072218-UTR-C-australica_Contig_1026:5365..54591682586762.6072218-UTR-C-australica_Contig_1026:5365..5459Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1026 5366..5459 -
1682586762.6340032-UTR-C-australica_Contig_1026:5873..59031682586762.6340032-UTR-C-australica_Contig_1026:5873..5903Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1026 5874..5903 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586762.6164854-CDS-C-australica_Contig_1026:5459..56311682586762.6164854-CDS-C-australica_Contig_1026:5459..5631Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1026 5460..5631 -
1682586762.624546-CDS-C-australica_Contig_1026:5712..58731682586762.624546-CDS-C-australica_Contig_1026:5712..5873Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1026 5713..5873 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1026.3.1prot_C-australica_Contig_1026.3.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1026 5460..5873 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1026.3.1

>prot_C-australica_Contig_1026.3.1 ID=prot_C-australica_Contig_1026.3.1|Name=mRNA_C-australica_Contig_1026.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=111bp
MLWCTLRLGVTRRPIATFRRPFCQSQAFPKSQESAEEEVLFTSILSEPIR
TLKRVSITSCGMSLCMPIALLASSSSVPLSGQIAISATTIAVAVSTTGLL
HFFTSNLIHR*
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mRNA from alignment at C-australica_Contig_1026:5366..5903-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1026.3.1 ID=mRNA_C-australica_Contig_1026.3.1|Name=mRNA_C-australica_Contig_1026.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=538bp|location=Sequence derived from alignment at C-australica_Contig_1026:5366..5903- (Chrysoparadoxa australica CS_1217)
AGTACACAGTGTCATACTGCTATTTATTTGATGTTGTGGTGTACACTCCG
GCTGGGTGTGACCAGACGCCCCATTGCCACCTTTCGGCGCCCATTCTGTC
AGTCTCAAGCCTTCCCGAAAAGTCAGGAATCAGCTGAGGAAGAAGTTCTC
TTCACAAGCATCCTCAGCGAGCCCATTCGCACACTTAAAAGGTGGGTGAG
TTGGCATTACCAGAGCCTTCCGAAAAATCAACTCCTTTCCATTCCCCAAC
TCTTTGTGCTGCCTCTTGACAGGGTGTCCATCACCTCTTGTGGCATGTCG
CTCTGCATGCCGATAGCACTCCTTGCCTCAAGCTCCAGCGTGCCCTTGTC
GGGTCAAATAGCAATTTCTGCCACTACCATTGCGGTGGCAGTGAGTACGA
CCGGACTGCTTCACTTCTTCACCAGTAACCTGATTCACCGGTGAGGATTA
TCTTCTGCCAAATCAGTCAGTTGCGCACTTGCTGGCTGGCTGTTCCCTCC
CCTTGACCTCACTCCCCTATAGGATGACCGAGGTGGGG
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Coding sequence (CDS) from alignment at C-australica_Contig_1026:5366..5903-

>mRNA_C-australica_Contig_1026.3.1 ID=mRNA_C-australica_Contig_1026.3.1|Name=mRNA_C-australica_Contig_1026.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=333bp|location=Sequence derived from alignment at C-australica_Contig_1026:5366..5903- (Chrysoparadoxa australica CS_1217)
ATGTTGTGGTGTACACTCCGGCTGGGTGTGACCAGACGCCCCATTGCCAC
CTTTCGGCGCCCATTCTGTCAGTCTCAAGCCTTCCCGAAAAGTCAGGAAT
CAGCTGAGGAAGAAGTTCTCTTCACAAGCATCCTCAGCGAGCCCATTCGC
ACACTTAAAAGGGTGTCCATCACCTCTTGTGGCATGTCGCTCTGCATGCC
GATAGCACTCCTTGCCTCAAGCTCCAGCGTGCCCTTGTCGGGTCAAATAG
CAATTTCTGCCACTACCATTGCGGTGGCAGTGAGTACGACCGGACTGCTT
CACTTCTTCACCAGTAACCTGATTCACCGGTGA
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