Homology
BLAST of mRNA_C-australica_Contig_1026.3.1 vs. uniprot
Match: A0A835ZAD4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAD4_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 5.630e-10 Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = 1 Query: 121 SQESAEEEVLFTSILSEPIRTLKRVSITSCGMSLC-MPIALLASSSSVPLSGQIAISATTIAVAVSTTGLLHFFTSNLIHR 360
S + +EE+L+ L+ PI+TLKRVSIT+C MS+ P+ L+ + SVPLSGQIA++ + AV +T LLH+ T +H+
Sbjct: 41 STNARKEELLYIGPLTAPIKTLKRVSITTCAMSMIGTPLLLVLGNDSVPLSGQIAVTGVALTAAVGSTALLHWCTRPYVHK 121
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 457 |
| Hectar predicted targeting category | mitochondrion |
| Exons | 2 |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-11_001450.1 |
| Cds size | 333 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682586762.6072218-UTR-C-australica_Contig_1026:5365..5459 | 1682586762.6072218-UTR-C-australica_Contig_1026:5365..5459 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_1026 5366..5459 - |
| 1682586762.6340032-UTR-C-australica_Contig_1026:5873..5903 | 1682586762.6340032-UTR-C-australica_Contig_1026:5873..5903 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_1026 5874..5903 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682586762.6164854-CDS-C-australica_Contig_1026:5459..5631 | 1682586762.6164854-CDS-C-australica_Contig_1026:5459..5631 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1026 5460..5631 - |
| 1682586762.624546-CDS-C-australica_Contig_1026:5712..5873 | 1682586762.624546-CDS-C-australica_Contig_1026:5712..5873 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1026 5713..5873 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1026.3.1 >prot_C-australica_Contig_1026.3.1 ID=prot_C-australica_Contig_1026.3.1|Name=mRNA_C-australica_Contig_1026.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=111bp
MLWCTLRLGVTRRPIATFRRPFCQSQAFPKSQESAEEEVLFTSILSEPIR
TLKRVSITSCGMSLCMPIALLASSSSVPLSGQIAISATTIAVAVSTTGLL
HFFTSNLIHR* back to topmRNA from alignment at C-australica_Contig_1026:5366..5903- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-australica_Contig_1026.3.1 ID=mRNA_C-australica_Contig_1026.3.1|Name=mRNA_C-australica_Contig_1026.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=538bp|location=Sequence derived from alignment at C-australica_Contig_1026:5366..5903- (Chrysoparadoxa australica CS_1217)
AGTACACAGTGTCATACTGCTATTTATTTGATGTTGTGGTGTACACTCCG
GCTGGGTGTGACCAGACGCCCCATTGCCACCTTTCGGCGCCCATTCTGTC
AGTCTCAAGCCTTCCCGAAAAGTCAGGAATCAGCTGAGGAAGAAGTTCTC
TTCACAAGCATCCTCAGCGAGCCCATTCGCACACTTAAAAGGTGGGTGAG
TTGGCATTACCAGAGCCTTCCGAAAAATCAACTCCTTTCCATTCCCCAAC
TCTTTGTGCTGCCTCTTGACAGGGTGTCCATCACCTCTTGTGGCATGTCG
CTCTGCATGCCGATAGCACTCCTTGCCTCAAGCTCCAGCGTGCCCTTGTC
GGGTCAAATAGCAATTTCTGCCACTACCATTGCGGTGGCAGTGAGTACGA
CCGGACTGCTTCACTTCTTCACCAGTAACCTGATTCACCGGTGAGGATTA
TCTTCTGCCAAATCAGTCAGTTGCGCACTTGCTGGCTGGCTGTTCCCTCC
CCTTGACCTCACTCCCCTATAGGATGACCGAGGTGGGG back to topCoding sequence (CDS) from alignment at C-australica_Contig_1026:5366..5903- >mRNA_C-australica_Contig_1026.3.1 ID=mRNA_C-australica_Contig_1026.3.1|Name=mRNA_C-australica_Contig_1026.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=333bp|location=Sequence derived from alignment at C-australica_Contig_1026:5366..5903- (Chrysoparadoxa australica CS_1217)
ATGTTGTGGTGTACACTCCGGCTGGGTGTGACCAGACGCCCCATTGCCAC
CTTTCGGCGCCCATTCTGTCAGTCTCAAGCCTTCCCGAAAAGTCAGGAAT
CAGCTGAGGAAGAAGTTCTCTTCACAAGCATCCTCAGCGAGCCCATTCGC
ACACTTAAAAGGGTGTCCATCACCTCTTGTGGCATGTCGCTCTGCATGCC
GATAGCACTCCTTGCCTCAAGCTCCAGCGTGCCCTTGTCGGGTCAAATAG
CAATTTCTGCCACTACCATTGCGGTGGCAGTGAGTACGACCGGACTGCTT
CACTTCTTCACCAGTAACCTGATTCACCGGTGA back to top
|