Homology
BLAST of mRNA_C-australica_Contig_1024.7.1 vs. uniprot
Match:
D7FR40_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR40_ECTSI)
HSP 1 Score: 80.5 bits (197), Expect = 1.240e-13
Identity = 49/106 (46.23%), Postives = 71/106 (66.98%), Query Frame = 1
Query: 331 VPPDASKYQTESQRRRSLPLSQLKRRKKKKNEREDLSGQGELRPMVAKTDRRSRLQGEDYWIDNEELEKSRA-RESEREAAAQRRSTLQEGQFTREKLREEIISPW 645
PP QTE+QRRR+LPLS+LKR K KK ++ +GE+RP+V KTDR S L+GEDYWID E+++ +A RE++ +A A QF + K++ EI++P+
Sbjct: 149 APPGLESLQTENQRRRALPLSKLKRVKPKKRAAKE-EEEGEIRPLVLKTDRESVLRGEDYWIDYREVDRKKAIREAKAKAPAP-------DQFAQSKMKAEIVNPY 246
BLAST of mRNA_C-australica_Contig_1024.7.1 vs. uniprot
Match:
A0A835YJZ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJZ1_9STRA)
HSP 1 Score: 76.3 bits (186), Expect = 7.350e-13
Identity = 53/115 (46.09%), Postives = 72/115 (62.61%), Query Frame = 1
Query: 316 ANELNVPPDASKYQTESQRRRSLPLSQLKRRKKKKNEREDLSGQGELRPMVAKT-DRRSRLQGEDYWID----NEELEKSRARESEREAAAQRRSTLQEGQFTREKLREEIISPW 645
+N+ + PPD S +Q++SQ+RR+ PLSQLKR++K K +E +GELRP+V K + S LQGEDYWID NE+ +K + T E QF EKLREEI+SP+
Sbjct: 47 SNQPDQPPDVSDFQSDSQKRRNRPLSQLKRQRKVKQVQEP---EGELRPLVKKERNSMSVLQGEDYWIDLSLVNEDNDKPV------------KPTPTEDQFKDEKLREEIVSPY 146
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1024.7.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.24e-13 / Id = 46.23 Expect = 7.35e-13 / Id = 46.09 Sequence D7FR40_ECTSI A0A835YJZ1_9STRA
Match Name E-value Identity Description
D7FR40_ECTSI 1.240e-13 46.23 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more] A0A835YJZ1_9STRA 7.350e-13 46.09 Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Seed ortholog 2880.D7FR40 Model size 1017 Max annot lvl 2759|Eukaryota Hectar predicted targeting category signal peptide Exons 3 Evalue 3.64e-15 EggNOG OGs 2D131@1|root,2SGIC@2759|Eukaryota Ec32 ortholog description expressed unknown protein Ec32 ortholog Ec-09_003600.1 Cds size 504
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682586761.5052567-UTR-C-australica_Contig_1024:12224..12593 1682586761.5052567-UTR-C-australica_Contig_1024:12224..12593 Chrysoparadoxa australica CS_1217 UTR C-australica_Contig_1024 12225..12593 - 1682586761.5383565-UTR-C-australica_Contig_1024:13295..13439 1682586761.5383565-UTR-C-australica_Contig_1024:13295..13439 Chrysoparadoxa australica CS_1217 UTR C-australica_Contig_1024 13296..13439 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682586761.5144048-CDS-C-australica_Contig_1024:12593..12647 1682586761.5144048-CDS-C-australica_Contig_1024:12593..12647 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_1024 12594..12647 - 1682586761.5223815-CDS-C-australica_Contig_1024:12740..12908 1682586761.5223815-CDS-C-australica_Contig_1024:12740..12908 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_1024 12741..12908 - 1682586761.5302918-CDS-C-australica_Contig_1024:13013..13295 1682586761.5302918-CDS-C-australica_Contig_1024:13013..13295 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_1024 13014..13295 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1024.7.1
>prot_C-australica_Contig_1024.7.1 ID=prot_C-australica_Contig_1024.7.1|Name=mRNA_C-australica_Contig_1024.7.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=168bp
MMIHLFLCLLLTASCSGFLRTAPLPLAGSWHTLSKGHTPPLFMSEEPFSA back to top mRNA from alignment at C-australica_Contig_1024:12225..13439-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1024.7.1 ID=mRNA_C-australica_Contig_1024.7.1|Name=mRNA_C-australica_Contig_1024.7.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1215bp|location=Sequence derived from alignment at C-australica_Contig_1024:12225..13439- (Chrysoparadoxa australica CS_1217)GCGAATTCCTGAGATGCTGGGGGTTTGGGGAGGCCCTTGGCCCTAGGGGG
GGTGTGAATGTGTGAAATGTCAAGTGAGCCGAGTGAGAATGCCCCACGTG
AGAACTAAGTACAGCATACTAGTACGTAGTGTCCTTAGTCCTTA ATGATG
ATTCACCTGTTTCTTTGCCTGCTGCTGACGGCATCCTGCAGTGGTTTCCT
TCGCACTGCCCCGCTTCCCCTGGCTGGGTCATGGCATACGCTGAGTAAGG
GACATACGCCCCCCCTCTTTATGAGCGAGGAACCTTTCAGTGCGCAGCGA
CGGCAGGAGGCGAAGGCCAACGAGCTGAATGTTCCGCCAGATGCCAGCAA
GTACCAGACTGAAAGCCAGAGAAGAAGAAGCCTGCCATTGAGCCAGCTGA
AGCGAAGGAAGAAGAAGAAGAACGAG GTACTTAACCTCTCCCTAGTGTCT
TGCCTTTCCCGTCCTTACAAATGAGGAGCACATCATGACGTGCATCACTC
ACTGCACACTTTCTATTCTTTCTTTTCTCAGAGAGAGGATCTGTCGGGTC
AGGGCGAACTGCGGCCGATGGTAGCTAAGACTGACCGCAGAAGTAGGTTG
CAGGGAGAGGATTATTGGATTGATAATGAAGAACTGGAAAAATCAAGGGC
TCGGGAATCTGAGCGGGAGGCAGCAGCTCAGCGGAGAAGCACTCTGCAG G
TTGGTTGGTTGGTGTTGGTGAAGGTAGGGTAGGAAGGAGTTTGAAGTGCT
TTTACTTTGAGGTTGACCTCAGCTTCTATATTGCTTACTCAGGAGGGTCA
GTTCACGCGGGAGAAACTGAGGGAAGAGATTATCAGCCCATGGTAG GCTT
AGGCTGACATTGATACTGACACTGAGACAGAGACTGACACTGAGTGGCTC
ATACCTACTAGCTTTTATCTGCCTATCAGCTGCTTCTTAACTACTTGCAA
GGCCCTTGATTTGGGAGAGATTTGATAAGATAATTCGCTGGCTGTGCCAT
CTTCCTCACTCAACTCAATGCATATGGTTGAATGGTTCTGCTCTCCTGCA
CTAACAAGTACTGTTTGTTGGAGGAAACTTATCAGTATCAGTATTTAAGT
CACATCAACCGCCTGACGCGCTTTTCAATGCTCCTCTTGCCAATTCCAAC
AGGAAGCAAAACTGGATCCTCATATTTATTTTTGTTATTGGGAGCATTAT
AGGGTTTGTCTCACT back to top Coding sequence (CDS) from alignment at C-australica_Contig_1024:12225..13439-
>mRNA_C-australica_Contig_1024.7.1 ID=mRNA_C-australica_Contig_1024.7.1|Name=mRNA_C-australica_Contig_1024.7.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=504bp|location=Sequence derived from alignment at C-australica_Contig_1024:12225..13439- (Chrysoparadoxa australica CS_1217) back to top