mRNA_C-australica_Contig_1024.7.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_1024.7.1 vs. uniprot
Match: D7FR40_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR40_ECTSI) HSP 1 Score: 80.5 bits (197), Expect = 1.240e-13 Identity = 49/106 (46.23%), Postives = 71/106 (66.98%), Query Frame = 1 Query: 331 VPPDASKYQTESQRRRSLPLSQLKRRKKKKNEREDLSGQGELRPMVAKTDRRSRLQGEDYWIDNEELEKSRA-RESEREAAAQRRSTLQEGQFTREKLREEIISPW 645
PP QTE+QRRR+LPLS+LKR K KK ++ +GE+RP+V KTDR S L+GEDYWID E+++ +A RE++ +A A QF + K++ EI++P+
Sbjct: 149 APPGLESLQTENQRRRALPLSKLKRVKPKKRAAKE-EEEGEIRPLVLKTDRESVLRGEDYWIDYREVDRKKAIREAKAKAPAP-------DQFAQSKMKAEIVNPY 246
BLAST of mRNA_C-australica_Contig_1024.7.1 vs. uniprot
Match: A0A835YJZ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJZ1_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 7.350e-13 Identity = 53/115 (46.09%), Postives = 72/115 (62.61%), Query Frame = 1 Query: 316 ANELNVPPDASKYQTESQRRRSLPLSQLKRRKKKKNEREDLSGQGELRPMVAKT-DRRSRLQGEDYWID----NEELEKSRARESEREAAAQRRSTLQEGQFTREKLREEIISPW 645
+N+ + PPD S +Q++SQ+RR+ PLSQLKR++K K +E +GELRP+V K + S LQGEDYWID NE+ +K + T E QF EKLREEI+SP+
Sbjct: 47 SNQPDQPPDVSDFQSDSQKRRNRPLSQLKRQRKVKQVQEP---EGELRPLVKKERNSMSVLQGEDYWIDLSLVNEDNDKPV------------KPTPTEDQFKDEKLREEIVSPY 146 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1024.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1024.7.1 >prot_C-australica_Contig_1024.7.1 ID=prot_C-australica_Contig_1024.7.1|Name=mRNA_C-australica_Contig_1024.7.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=168bp MMIHLFLCLLLTASCSGFLRTAPLPLAGSWHTLSKGHTPPLFMSEEPFSAback to top mRNA from alignment at C-australica_Contig_1024:12225..13439- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1024.7.1 ID=mRNA_C-australica_Contig_1024.7.1|Name=mRNA_C-australica_Contig_1024.7.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1215bp|location=Sequence derived from alignment at C-australica_Contig_1024:12225..13439- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1024:12225..13439- >mRNA_C-australica_Contig_1024.7.1 ID=mRNA_C-australica_Contig_1024.7.1|Name=mRNA_C-australica_Contig_1024.7.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=504bp|location=Sequence derived from alignment at C-australica_Contig_1024:12225..13439- (Chrysoparadoxa australica CS_1217)back to top |