mRNA_C-australica_Contig_10215.2.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_10215.2.1 vs. uniprot
Match: UPI0003739DEA (hypothetical protein n=1 Tax=Balneola vulgaris TaxID=287535 RepID=UPI0003739DEA) HSP 1 Score: 211 bits (537), Expect = 1.760e-68 Identity = 101/107 (94.39%), Postives = 105/107 (98.13%), Query Frame = 1 Query: 1 FGGRHPNFINWSSGVILAANTSELLYAPVVGSRISYGGIVTGIDLFYLTNTEEGTLRLAPVLGFGAHKVQIAIQPHIRISNKSFEPISRGHFAINVKLFSLNKQTLH 321
FGGRHPNFINWSSGVIL+ANT+ELL+APVVGSRISYGGIVTGIDLFYLTNTEEGTLRLAPVLGFGAHKVQIAIQPHIRISNKSFEPISRGHF IN+KLFSL KQTLH
Sbjct: 54 FGGRHPNFINWSSGVILSANTTELLFAPVVGSRISYGGIVTGIDLFYLTNTEEGTLRLAPVLGFGAHKVQIAIQPHIRISNKSFEPISRGHFVINMKLFSLKKQTLH 160
BLAST of mRNA_C-australica_Contig_10215.2.1 vs. uniprot
Match: A0A7K1XWC7_9SPHI (Uncharacterized protein n=1 Tax=Pedobacter sp. HMF7056 TaxID=2695274 RepID=A0A7K1XWC7_9SPHI) HSP 1 Score: 93.6 bits (231), Expect = 6.070e-22 Identity = 41/100 (41.00%), Postives = 63/100 (63.00%), Query Frame = 1 Query: 10 RHPNFINWSSGVILAANTSELLYAPVVGSRISYGGIVTGIDLFYLTNTEEGTLRLAPVLGFGAHKVQIAIQPHIRISNKSFEPISRGHFAINVKLFSLNK 309
RH F S G + NT + L P G + GI G DL Y T+ E+GTLRL P++G G+++++++I PH+R++N+ FEPI RGH + V+L +L +
Sbjct: 67 RHGGFGVLSLGTDIGLNTRKFLAGPRAGVLAGFMGICLGADLDYYTDFEQGTLRLVPIIGIGSNRIRLSINPHVRLTNRYFEPIDRGHINLTVRLLTLRR 166 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10215.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10215.2.1 >prot_C-australica_Contig_10215.2.1 ID=prot_C-australica_Contig_10215.2.1|Name=mRNA_C-australica_Contig_10215.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=108bp FGGRHPNFINWSSGVILAANTSELLYAPVVGSRISYGGIVTGIDLFYLTNback to top mRNA from alignment at C-australica_Contig_10215:509..832- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10215.2.1 ID=mRNA_C-australica_Contig_10215.2.1|Name=mRNA_C-australica_Contig_10215.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=324bp|location=Sequence derived from alignment at C-australica_Contig_10215:509..832- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10215:509..832- >mRNA_C-australica_Contig_10215.2.1 ID=mRNA_C-australica_Contig_10215.2.1|Name=mRNA_C-australica_Contig_10215.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=324bp|location=Sequence derived from alignment at C-australica_Contig_10215:509..832- (Chrysoparadoxa australica CS_1217)back to top |