mRNA_C-australica_Contig_1021.5.3 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1021.5.3
Unique NamemRNA_C-australica_Contig_1021.5.3
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1021.5.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1021contigC-australica_Contig_1021:9141..11206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1394
Hectar predicted targeting categoryother localisation
Exons6
Cds size1320
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1021.5.3prot_C-australica_Contig_1021.5.3Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1021 9141..11133 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586758.7557433-CDS-C-australica_Contig_1021:9140..93331682586758.7557433-CDS-C-australica_Contig_1021:9140..9333Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 9141..9333 -
1682586758.7673779-CDS-C-australica_Contig_1021:9427..96221682586758.7673779-CDS-C-australica_Contig_1021:9427..9622Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 9428..9622 -
1682586758.778441-CDS-C-australica_Contig_1021:9945..101381682586758.778441-CDS-C-australica_Contig_1021:9945..10138Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 9946..10138 -
1682586758.7892914-CDS-C-australica_Contig_1021:10231..107651682586758.7892914-CDS-C-australica_Contig_1021:10231..10765Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 10232..10765 -
1682586758.8013108-CDS-C-australica_Contig_1021:10836..110261682586758.8013108-CDS-C-australica_Contig_1021:10836..11026Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 10837..11026 -
1682586758.8090408-CDS-C-australica_Contig_1021:11118..111331682586758.8090408-CDS-C-australica_Contig_1021:11118..11133Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 11119..11133 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586758.8169923-UTR-C-australica_Contig_1021:11133..112061682586758.8169923-UTR-C-australica_Contig_1021:11133..11206Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1021 11134..11206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1021.5.3

>prot_C-australica_Contig_1021.5.3 ID=prot_C-australica_Contig_1021.5.3|Name=mRNA_C-australica_Contig_1021.5.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=440bp
MQLARGQDRFDAALRLAKTAPNALLQPQLGGLGSPRGHKPPPPKTSMDWG
ALRSPRAHVPPPPKQSRRGIVSMTLDLQDLGVRFPATQQLPSAKPATTSA
SSSQGGSDSDRPQFHSVPVASVRPKNRWKRALNVLNPRKQHRNPSPNQES
EDFTAIVSEGVQLSSTAPALFSAEKDRAAKKGAMGITAPPRLVIGSGSTQ
SHSRGEGHQSSNAGDSGAWIGLRGSPSASSGSIGHRELPRDSQGRAYPGE
DKGGGQRQEEALQTLEEWAAERAELHRRLDEATAFVETLQQGIQIGREQA
RGGDALSAQERMPGCSLTYEDLHNLRQVLATLMETELPGMLDAKLATMSQ
TMAGPTPAVFTVEKRGDARQEMEDLRCELQASEQARAELEALHAEDAADL
RRWRNSALEGDSSETTDKGGMRKLVASLETELRAERKLLR
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mRNA from alignment at C-australica_Contig_1021:9141..11206-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1021.5.3 ID=mRNA_C-australica_Contig_1021.5.3|Name=mRNA_C-australica_Contig_1021.5.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2066bp|location=Sequence derived from alignment at C-australica_Contig_1021:9141..11206- (Chrysoparadoxa australica CS_1217)
GTTCGCTGGTGACAAAGAGCAAGGAGTAGAAGGCTCCGCTTCGGCGCTGA
GCCCTCACGTCTGAGGGGATCCCATGCAACTTGCTCGGGTAAGGGCATAG
AATTTTTCTCTCTTCTCTCTCTTCTCTTCTCTCTCTCTCCTCCTCCCTCT
CCCTCTCTCAGACTGTTCCTCTCCTCTCAGGGGCAGGATCGCTTCGATGC
GGCGCTACGCCTCGCAAAGACGGCGCCCAATGCACTGCTTCAGCCTCAAC
TAGGTGGTCTCGGCAGCCCAAGAGGGCATAAGCCCCCTCCACCAAAAACC
TCAATGGACTGGGGTGCTCTGAGAAGCCCTAGGGCACACGTTCCTCCACC
TCCCAAGCAGAGTAGACGAGGTGATAGATAAACCTCCTGCACAGCCTTAT
CGTGAACTCTGCTTACAACTAAGAACACGCTGCCACGGCAGGAATTGTGT
CCATGACATTGGATTTACAGGATCTGGGAGTACGTTTCCCAGCGACTCAG
CAGCTGCCCTCTGCTAAACCTGCCACCACTTCTGCTAGTTCATCTCAGGG
TGGCTCAGACTCGGACCGCCCACAATTTCACTCTGTTCCAGTGGCCTCAG
TCAGGCCTAAGAACAGATGGAAGAGGGCTCTCAATGTGCTTAATCCTCGC
AAGCAACACAGGAATCCAAGCCCGAATCAAGAGTCAGAGGATTTTACGGC
CATTGTCTCAGAGGGAGTGCAGCTAAGTTCAACGGCTCCAGCGCTCTTCT
CGGCTGAGAAGGACAGGGCGGCGAAGAAAGGCGCAATGGGGATCACCGCA
CCGCCCCGGCTGGTCATCGGCAGTGGGTCAACTCAAAGTCATAGCCGGGG
TGAAGGTCACCAGAGCTCGAATGCAGGGGACTCAGGAGCATGGATTGGGC
TACGCGGCTCGCCATCGGCTTCCAGTGGGTCCATTGGGCACAGGGAGTTG
CCTCGTGACAGCCAGGGCCGAGCATGTAAGATTGAGGCACCCAGCTATTA
ACACTGAATAGCGCTTCCCATGACGGGATTTACTGAAGCATAACCGTAGC
CGTTCAAACTCTTGGCAGATCCGGGAGAGGACAAAGGCGGAGGCCAGCGT
CAGGAGGAGGCTTTGCAGACCCTTGAAGAGTGGGCGGCGGAGCGTGCAGA
GCTTCACAGGAGGCTGGACGAGGCAACTGCCTTCGTAGAAACTCTGCAGC
AGGGAATACAAATCGGGCGGGAACAAGCGAGGGGAGGTGATGCACTGAGT
GCGCAGGAGAGGTAACTGTTCCTAACCCTGACTTGGCTTGAGACCCTAAC
TTCTCATTCAAATAGCCTGCCTTTGTGACCTGACAAATCACTGCATACCT
CATGTCACCTCTCACTCTCTTACCTTTGTGTTGACATTACAAGGCACTGG
ATAGCAATGGCCAAGGGTTGAAATTTTGGCAACCCGCCTTTATACAATGC
TCTCTCACTATACAGTATTGCCTCTTGTACTTACTATTATACAAACTTTC
AGTGGCGTAGAAGGGTGCCCCTGACTTACCACAAGGGGTTAGAAAGAGCC
GGCCTGACCTAGCCTTACCCACCTTACACCGCAGGATGCCTGGTTGCTCA
CTGACGTATGAAGACCTCCACAATTTGAGGCAAGTTCTAGCCACTCTAAT
GGAGACGGAGCTGCCTGGCATGCTTGATGCTAAGCTTGCCACCATGAGCC
AGACAATGGCAGGGCCCACCCCAGCAGTATTCACAGTGGAAAAAAGGGGG
GATGCGAGGCAAGAGATGGAAGATCTCAGGTGGGTGATAAAAGCTTTGAC
CAGACCCCATTAGTATAACTAATTTTGGCATGATTGCTCCGTTCGCATCA
CGCTCTCTGTCAACCTGCTTCAGGTGTGAGTTGCAAGCGTCAGAGCAAGC
AAGGGCTGAGCTGGAGGCGCTCCACGCTGAAGATGCAGCAGACTTGAGGA
GATGGAGGAACAGCGCCTTGGAGGGAGACTCATCAGAAACAACAGACAAG
GGCGGGATGCGCAAGCTGGTGGCTAGCCTTGAGACTGAGCTCAGAGCAGA
GCGGAAGCTACTGAGG
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Coding sequence (CDS) from alignment at C-australica_Contig_1021:9141..11206-

>mRNA_C-australica_Contig_1021.5.3 ID=mRNA_C-australica_Contig_1021.5.3|Name=mRNA_C-australica_Contig_1021.5.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1320bp|location=Sequence derived from alignment at C-australica_Contig_1021:9141..11206- (Chrysoparadoxa australica CS_1217)
ATGCAACTTGCTCGGGGGCAGGATCGCTTCGATGCGGCGCTACGCCTCGC
AAAGACGGCGCCCAATGCACTGCTTCAGCCTCAACTAGGTGGTCTCGGCA
GCCCAAGAGGGCATAAGCCCCCTCCACCAAAAACCTCAATGGACTGGGGT
GCTCTGAGAAGCCCTAGGGCACACGTTCCTCCACCTCCCAAGCAGAGTAG
ACGAGGAATTGTGTCCATGACATTGGATTTACAGGATCTGGGAGTACGTT
TCCCAGCGACTCAGCAGCTGCCCTCTGCTAAACCTGCCACCACTTCTGCT
AGTTCATCTCAGGGTGGCTCAGACTCGGACCGCCCACAATTTCACTCTGT
TCCAGTGGCCTCAGTCAGGCCTAAGAACAGATGGAAGAGGGCTCTCAATG
TGCTTAATCCTCGCAAGCAACACAGGAATCCAAGCCCGAATCAAGAGTCA
GAGGATTTTACGGCCATTGTCTCAGAGGGAGTGCAGCTAAGTTCAACGGC
TCCAGCGCTCTTCTCGGCTGAGAAGGACAGGGCGGCGAAGAAAGGCGCAA
TGGGGATCACCGCACCGCCCCGGCTGGTCATCGGCAGTGGGTCAACTCAA
AGTCATAGCCGGGGTGAAGGTCACCAGAGCTCGAATGCAGGGGACTCAGG
AGCATGGATTGGGCTACGCGGCTCGCCATCGGCTTCCAGTGGGTCCATTG
GGCACAGGGAGTTGCCTCGTGACAGCCAGGGCCGAGCATATCCGGGAGAG
GACAAAGGCGGAGGCCAGCGTCAGGAGGAGGCTTTGCAGACCCTTGAAGA
GTGGGCGGCGGAGCGTGCAGAGCTTCACAGGAGGCTGGACGAGGCAACTG
CCTTCGTAGAAACTCTGCAGCAGGGAATACAAATCGGGCGGGAACAAGCG
AGGGGAGGTGATGCACTGAGTGCGCAGGAGAGGATGCCTGGTTGCTCACT
GACGTATGAAGACCTCCACAATTTGAGGCAAGTTCTAGCCACTCTAATGG
AGACGGAGCTGCCTGGCATGCTTGATGCTAAGCTTGCCACCATGAGCCAG
ACAATGGCAGGGCCCACCCCAGCAGTATTCACAGTGGAAAAAAGGGGGGA
TGCGAGGCAAGAGATGGAAGATCTCAGGTGTGAGTTGCAAGCGTCAGAGC
AAGCAAGGGCTGAGCTGGAGGCGCTCCACGCTGAAGATGCAGCAGACTTG
AGGAGATGGAGGAACAGCGCCTTGGAGGGAGACTCATCAGAAACAACAGA
CAAGGGCGGGATGCGCAAGCTGGTGGCTAGCCTTGAGACTGAGCTCAGAG
CAGAGCGGAAGCTACTGAGG
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