mRNA_C-australica_Contig_1021.4.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1021.4.1
Unique NamemRNA_C-australica_Contig_1021.4.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
[Close]
BLAST of mRNA_C-australica_Contig_1021.4.1 vs. uniprot
Match: D8LCC2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCC2_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 2.450e-32
Identity = 88/217 (40.55%), Postives = 116/217 (53.46%), Query Frame = -3 
Query: 1976 AAAYCVNVFAVTRGGRLDS--QRGAGEEKLLPLFRPQPWAFAIWGPIFLGETVFSIYQALPMN--RDSKWLPNVSPWFTAAMAGQSLWCASFRPWAASRGLLWLPASLLAVTGGALYGATNIILNEVQTHTELHALWF---------HWGCI*DGSLRQH**T*TGMLLH-SPLKTASSWQFPCSGIHAAVGLGLWVTAMRRDPIFPAVLAWALSAV 2584
            A+A+ +N+ A   GGRLD   Q G+   + +    P  WAFAIWGPIF GE ++  +Q +P+   R S WL ++SPWF  AM  Q+LWC SFRPWA   GLLWLPA LL  TG AL G  + IL E    +++  L +         H G I   +L        G     + L            + AAV LG+ +T +R DPI+ AV+AWAL AV
Sbjct:  315 ASAWALNMRATFGGGRLDGIGQSGSSGTRPVRFLSPAGWAFAIWGPIFFGEAIYVAFQLMPLPSIRGSWWLSDISPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVAL-GGVHRILREAWFTSDMTVLQYLAVHVPLSLHLGWISCATLVNL----NGYFATINKLSNRVKLGLALGSVVAAVALGVAITLLREDPIYAAVVAWALWAV 526
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BLAST of mRNA_C-australica_Contig_1021.4.1 vs. uniprot
Match: A0A835Z9R9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9R9_9STRA)

HSP 1 Score: 135 bits (340), Expect = 2.380e-31
Identity = 91/222 (40.99%), Postives = 124/222 (55.86%), Query Frame = -3 
Query: 1973 AAAYCVNVFAVTRGGRLD----SQRGAGEEKLLPLFRPQPWAFAIWGPIFLGETVFSIYQALPMNR--DSKWLPNVSPWFTAAMAGQSLWCASFRPWAASRGL--LWLPASLLAVTGGALYGATNIILNEVQTHTEL----HALWF-----HWGCI*DGSLRQH**T*TGMLLHS-PLKTASSWQFPCSGIHAAVGLGLWVTAMRRDPIFPAVLAWALSAVS 2584
            A  Y +N  AV   GRLD    SQ  A +++    F P  WAFAIW PIF GE +F IYQALP+ R   S WL  +SP+F+ AM  Q+LWC +FRPWA + GL   W+PA LL +   AL GA  I++  ++  +EL    +AL F     H+G +   +L        G +  + P   A       + I+ AV +G  VT  RRDPI+ AV+AWAL+A++
Sbjct:   43 AVTYLLNFAAVRVPGRLDGRQWSQDAATQQRY---FAPAGWAFAIWAPIFAGELLFVIYQALPLARVRTSWWLAELSPYFSGAMLLQTLWCGAFRPWARAAGLNLQWIPALLLGLGAAALGGAHGILVQALED-SELSPLSYALAFVPLALHFGWLTAAALVNA----NGFVAAAAPRSHAVKASAAIASIYLAVLVGAAVTFARRDPIYAAVIAWALAAIA 256
[Close]
BLAST of mRNA_C-australica_Contig_1021.4.1 vs. uniprot
Match: A0A7S2UXB1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXB1_9STRA)

HSP 1 Score: 135 bits (340), Expect = 2.930e-31
Identity = 79/214 (36.92%), Postives = 123/214 (57.48%), Query Frame = -3 
Query: 1973 AYCVNVFAVTRGGRLDSQRGAG--EEKLLPLFRPQPWAFAIWGPIFLGETVFSIYQALPMNR-DSKWLPNVSPWFTAAMAGQSLWCASFRPWAASRGLLWLPASLLAVTGGALYGATNIILNEVQTHTELHALWF---------HWGCI*DGSLRQH**T*TGMLLHSPLKTASSWQFPCSGIHAAVGLGLWVTAMRRDPIFPAVLAWALSAVS 2578
            A+ +N++AV+  GRLD  + A   +E  +  F P  WAFAIWGPIFLGE +F+ +Q LP+    + ++P ++ W+  A+A QSLWC++FRPWA   G LWLPA+LL +T  AL GA  ++ + + +  E+  L +         H+G I   SL         +     +K+ +S     +G+ AA  +G W    R +P +P V++WAL+AV+
Sbjct:   65 AWALNMWAVSVPGRLDGSQAAALSDEGEIRFFTPAGWAFAIWGPIFLGEALFAFFQLLPIETVQTSFIPKLTVWWIPAVACQSLWCSAFRPWAKKSGFLWLPAALLTLTAVALGGAHKVLFDALHSE-EVSMLEYIIVNIPLTLHFGWITAASLVSWNGYLASVTASISIKSLASSASIVAGVIAAALVG-W---NRIEPFYPLVVSWALAAVA 273
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BLAST of mRNA_C-australica_Contig_1021.4.1 vs. uniprot
Match: A0A7S0WI04_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WI04_9CHLO)

HSP 1 Score: 130 bits (327), Expect = 2.780e-29
Identity = 82/231 (35.50%), Postives = 117/231 (50.65%), Query Frame = -3 
Query: 1946 VPAAAYCVNVFAVTRGGRLDSQRGAGEEKLLP------LFRPQPWAFAIWGPIFLGETVFSIYQALPMNRDSKWLPNVSPWFTAAMAGQSLWCASFRPWAASRGLLWLPASLLAVTGGALYGATNIILNEV----------QTHTELHALWFHWGCI*DGSLRQH**T*TGMLLHSPLKTASSWQFPCSGIHAAVGLGLWVTAMRRDPIFPAVLAWALSAVSGYGSSEKGK 2590
            V AAA+C NV+AV+ GGR+DS R A    + P      L  P  WAFAIWG I+L E++F++ Q LP   D  WL +VSPW+ AA   QSLWCA+FR WA   G+ W+ A+LL  T  AL GA  ++              Q       L  H+G +   SL         +   + +   +      + +H A  +G  V  +R D ++   LAWAL+A+     ++KG+
Sbjct:   78 VNAAAFCPNVWAVSSGGRIDS-RYANTNGVPPSDEYRSLVTPSGWAFAIWGVIYLTESIFTVVQLLPSMTDVTWLLDVSPWWVAANIYQSLWCAAFRDWARPSGVFWISAALLTATAIALAGAEAVVTGPSVGTGSWTAVGQRVLAQMPLSLHFGWVTAASLVNWNSFFAVLYRDAHISLRTQIWLAFASLHLAYIVGSIVAVVRMDFLYSLTLAWALTAIK----TDKGR 303
[Close]
BLAST of mRNA_C-australica_Contig_1021.4.1 vs. uniprot
Match: A0A2D4CCC1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CCC1_PYTIN)

HSP 1 Score: 131 bits (329), Expect = 2.860e-27
Identity = 68/234 (29.06%), Postives = 107/234 (45.73%), Query Frame = 3 
Query:  105 DVEESDSSHCMVCLNRLVSDENEMLFCEGCDIGVHQKCYGIERIPKGDYYCDRCSHLRKLQSKNIPDKASDIHCELCPNLHGGIKRTTDNRWVHLACAMWARGAKIESTRQECLVDLSDVSIIT------------------VEEADKG-----------MGQRCEFCAKKEGYLLGCSRGKDSDRPCARKFHFLCGWFAGAFVHCKTKKGVANGKGYEGYPAKLDMDIMCLTH 719
            + E  D   C+VC +    + N ++FC+ CD+ VHQ+CYG++R+P  ++YCDRC      + ++  D A++++C+LCP   G  KRT D +WVH+ CA+W  G  I +     L  LS++ ++                   +E    G            G  C++C    G  L C         C   +H LCGWF G  +     +    G  Y G  A L+  ++C  H
Sbjct:  727 EAEPVDDGTCVVCFDGQSPESNPIIFCDRCDLAVHQRCYGVQRVPSNEFYCDRC------RPEDTHDPAAEVYCQLCPLRDGAFKRTVDGKWVHVVCALWCPGVWIGN-----LQTLSEIQLVVNATHRTRFADTTAELSQLIEGTKDGHAGSVLGPRLETGSLCQYCRVACGRTLQCCHA-----GCTVSYHPLCGWFEGLPLTVSLSEF---GFIYSGGGAGLEFKMLCANH 941
[Close]
BLAST of mRNA_C-australica_Contig_1021.4.1 vs. uniprot
Match: A0A024UN41_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UN41_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.480e-26
Identity = 70/225 (31.11%), Postives = 101/225 (44.89%), Query Frame = 3 
Query:  105 DVEESDSSHCMVCLNRLVSDENEMLFCEGCDIGVHQKCYGIERIPKGDYYCDRCSHLRKLQSKNIPDKASDIHCELCPNLHGGIKRTTDNRWVHLACAMWARGA---KIESTRQECLVDLSDVSIITVEEADKGM----------------GQRCEFCAKKEGYLLGCSRGKDSDRPCARKFHFLCGWFAGAFVHCKTKKGVANGKGYEGYPAKLDMDIMCLTHS 722
            D++  +   C+VC++    D N ++FC+ CD+ VHQ+CYG+  IPK D+YCD+CS     +   +P       C LCP+ HG +K+T +  WVH+ CA+W       K+     +   DLS V   T    + G                 G  C  C    G  + C       R C   FH LC WFAG ++H +     A G    G    L   + CL H+
Sbjct:  839 DLQSFEDGTCVVCMDGYSEDSNPIIFCDKCDVAVHQRCYGVATIPKSDFYCDKCS----AKGPVVPQ------CALCPHPHGALKQTVEGLWVHVFCALWCPTTFLVKVPRMLFQLTPDLSKVRYATTSIDELGSTTALADVVGLPPPVQRGGLCRVCRIATGCTIQC-------RNCPASFHPLCAWFAGCYMHVQV---AACGYVCAGGGQGLLYTLTCLDHT 1043
[Close]
BLAST of mRNA_C-australica_Contig_1021.4.1 vs. uniprot
Match: T0S3T8_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S3T8_SAPDV)

HSP 1 Score: 128 bits (321), Expect = 2.520e-26
Identity = 77/251 (30.68%), Postives = 109/251 (43.43%), Query Frame = 3 
Query:   51 HSIMDWAIIKKFAKNGLKDVE---ESDSSH--------CMVCLNRLVSDENEMLFCEGCDIGVHQKCYGIERIPKGDYYCDRCSHLRKLQSKNIPDKASDIHCELCPNLHGGIKRTTDNRWVHLACAMWARGAKIESTRQECL----------VDLSDVSIITVEEADKG-------MGQRCEFCAKKEGYLLGCSRGKDSDRPCARKFHFLCGWFAGAFVHCKTKKGVANGKGYEGYPAKLDMDIMCLTH 719
            H    W  +      G KD+    ESD +         C++C + +  D N ++FCE CDI VHQ+CYGI  IPK D+YCD+C  LRKL S       + + C+LCP   G +K T +  WVH+ACA+W+   ++    +  L           +    + +T   AD          G  C  C    G  + C R  D    C    H LC W+AG  +H       A G  + G    L  ++ C  H
Sbjct:  781 HEYAWWKAVCLCVIKGTKDLPFLPESDDTRLQPFEDGTCVICFDGISEDGNPIIFCEACDIAVHQRCYGIAEIPKTDFYCDKCIALRKLPS-------APVFCQLCPMRDGALKMTKEGLWVHVACALWSPNTQLVHIPRMLLQLSMQPHVRFANFDTATAMTSPLADVADLPPPLLAGGLCTICRVATGRTVRC-RHPD----CGTSMHPLCAWYAGWHMHASV---AACGYVHVGGGQGLVFNVYCDAH 1016
[Close]
BLAST of mRNA_C-australica_Contig_1021.4.1 vs. uniprot
Match: A0A6V1K7Z9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1K7Z9_HETAK)

HSP 1 Score: 120 bits (301), Expect = 1.270e-25
Identity = 75/226 (33.19%), Postives = 118/226 (52.21%), Query Frame = -3 
Query: 1946 YCVNVFAVTRGGRLDSQRGAGE----EKLLPLFRPQPWAFAIWGPIFLGETVFSIYQALPMN--RDSKWLPNVSPWFTAAMAGQSLWCASFRPWAASRGLLWLPASLLAVTGGALYGATNIILNEVQTHT-ELHALWF---------HWGCI*DGSLRQH**T*TGMLLHSPLKTASSWQFPCSGIHAAVGLGLWVTAMRRDPIFPAVLAWALSAVSGYGSSEKGK 2575
            +  N +A  R GR+D ++   E    +++   F P  WAF IW PIF+GET+F  YQALP+N  ++  +L  +SP++ AA+  QS+W    RPWA   G  W+ A+LL +TG AL G   ++ ++  T   +L+ L F         H+G +    L        G+L  +PL   +   F  + +  A  +G+ V A R DP+    L+WAL+ ++   + EK K
Sbjct:  106 FLFNRWAGKRPGRMDMKQPRAEASQKKEVARFFTPAGWAFRIWIPIFIGETIFVFYQALPINYIKNKDFLAMLSPFWIAAIGFQSIWTFCARPWAVENGYGWIQAALLVLTGVALSGVHKVMTSQPHTLVGDLNILDFIVAQIPLSLHFGWMMAAGLVSV----NGVLARTPLTIRAKHLFSDASVVVATVIGVVVAAKRTDPVVAFALSWALAGLADDKAWEKLK 327
[Close]
BLAST of mRNA_C-australica_Contig_1021.4.1 vs. uniprot
Match: A0A8K1C640_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C640_PYTOL)

HSP 1 Score: 125 bits (315), Expect = 1.300e-25
Identity = 74/240 (30.83%), Postives = 109/240 (45.42%), Query Frame = 3 
Query:   78 KKFAKNGLKDVEESDSSHCMVCLNRLVSDENEMLFCEGCDIGVHQKCYGIERIPKGDYYCDRCSHLRKLQSKNIPDKASDIHCELCPNLHGGIKRTTDNRWVHLACAMWARGAKIESTRQECLVDLSDVS-----IITVEEADKGM---------------------GQRCEFCAKKEGYLLGCSRGKDSDRPCARKFHFLCGWFAGAFVHCKTKKGVANGKGYEGYPAKLDMDIMCLTH 719
            KK   +G  + E  D   C+VC +    + N ++FC+ CD+ +HQ+CYGI+R+P  ++YCDRC    +L+ +   D A+++   LCP   G  KRT D +WVH+ CA+W  G  I   R    + L D +     I TV E +  +                     G  C +C    G  + CS        C+  +H LCGWF G  +     +   NG  Y G  A L   + C  H
Sbjct:  682 KKSGDDG--EEEPVDDGTCVVCFDGQSPESNPIIFCDRCDLAIHQRCYGIQRVPSSNFYCDRC----RLEDEGR-DPAAEVXXXLCPLRDGAFKRTIDGKWVHVVCALWCPGVWIGDLRNLADIKLVDAAHTTRFIDTVAEVNALIAGSKDQEKTQVQSKPACRIEHGSLCSYCKVTCGRTIRCSHP-----GCSVSYHPLCGWFEGLPMTVAISE---NGFVYCGGGAGLTFKMSCADH 906
[Close]
BLAST of mRNA_C-australica_Contig_1021.4.1 vs. uniprot
Match: A0A1V9YGY2_9STRA (Kinesin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGY2_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.690e-25
Identity = 68/222 (30.63%), Postives = 98/222 (44.14%), Query Frame = 3 
Query:  108 VEESDSSHCMVCLNRLVSDENEMLFCEGCDIGVHQKCYGIERIPKGDYYCDRCSHLRKLQSKNIPDKASDIHCELCPNLHGGIKRTTDNRWVHLACAMWARGAKIESTRQECLVDLSDVSIITVEEADKGM------------------GQRCEFCAKKEGYLLGCSRGKDSDRPCARKFHFLCGWFAGAFVHCKTKKGVANGKGYEGYPAKLDMDIMCLTH 719
            V+  +   C++C + +  D N ++FCE CDI VHQ+CYG+  IPK D+YCD+C  LRK  +         + C+LCP   G +K+T +  WVH+ACA+W+  A++    +  LV LS   I+     D                     G  C  C    G  + C         C    H LC W+AG  +        A G  + G    L  D+ C  H
Sbjct:  789 VQPFEEGTCVICFDGVSEDSNPIIFCEACDIAVHQRCYGVADIPKHDFYCDKCVALRKAPAL--------VFCQLCPLRDGALKQTKEGLWVHVACALWSPAAQLAHIPR-MLVHLSPQPIVRFASYDPATAMTLPLADVADLPPPLVSGGLCALCRVATGCTVCCRAP-----GCGTAMHALCAWYAGLHLRVAV---AACGYVHVGGGQGLTFDVFCPAH 993
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1021.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCC2_ECTSI2.450e-3240.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z9R9_9STRA2.380e-3140.99Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UXB1_9STRA2.930e-3136.92Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0WI04_9CHLO2.780e-2935.50Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A2D4CCC1_PYTIN2.860e-2729.06Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A024UN41_9STRA1.480e-2631.11Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
T0S3T8_SAPDV2.520e-2630.68Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A6V1K7Z9_HETAK1.270e-2533.19Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8K1C640_PYTOL1.300e-2530.83Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9YGY2_9STRA1.690e-2530.63Kinesin-like protein n=1 Tax=Achlya hypogyna TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1021contigC-australica_Contig_1021:3858..8283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008863817.1
PFAMsPHD,PHD_2,zf-HC5HC2H_2
Model size2715
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons19
Evalue1.84e-28
EggNOG OGsCOG5141@1|root,KOG0955@2759|Eukaryota
Descriptionchromatin organization
Cds size1575
COG categoryP
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1021.4.1prot_C-australica_Contig_1021.4.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1021 3917..6801 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586758.8471713-UTR-C-australica_Contig_1021:3857..39161682586758.8471713-UTR-C-australica_Contig_1021:3857..3916Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1021 3858..3916 +
1682586759.0135717-UTR-C-australica_Contig_1021:6801..68921682586759.0135717-UTR-C-australica_Contig_1021:6801..6892Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1021 6802..6892 +
1682586759.0214512-UTR-C-australica_Contig_1021:6962..73051682586759.0214512-UTR-C-australica_Contig_1021:6962..7305Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1021 6963..7305 +
1682586759.0300894-UTR-C-australica_Contig_1021:7372..74631682586759.0300894-UTR-C-australica_Contig_1021:7372..7463Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1021 7373..7463 +
1682586759.03934-UTR-C-australica_Contig_1021:7542..76001682586759.03934-UTR-C-australica_Contig_1021:7542..7600Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1021 7543..7600 +
1682586759.0470047-UTR-C-australica_Contig_1021:7675..80431682586759.0470047-UTR-C-australica_Contig_1021:7675..8043Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1021 7676..8043 +
1682586759.0576837-UTR-C-australica_Contig_1021:8153..82831682586759.0576837-UTR-C-australica_Contig_1021:8153..8283Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1021 8154..8283 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586758.8645015-CDS-C-australica_Contig_1021:3916..39191682586758.8645015-CDS-C-australica_Contig_1021:3916..3919Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 3917..3919 +
1682586758.8728395-CDS-C-australica_Contig_1021:4016..42471682586758.8728395-CDS-C-australica_Contig_1021:4016..4247Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 4017..4247 +
1682586758.8898873-CDS-C-australica_Contig_1021:4323..43811682586758.8898873-CDS-C-australica_Contig_1021:4323..4381Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 4324..4381 +
1682586758.9030967-CDS-C-australica_Contig_1021:4451..44801682586758.9030967-CDS-C-australica_Contig_1021:4451..4480Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 4452..4480 +
1682586758.916358-CDS-C-australica_Contig_1021:4643..47001682586758.916358-CDS-C-australica_Contig_1021:4643..4700Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 4644..4700 +
1682586758.925541-CDS-C-australica_Contig_1021:4774..49441682586758.925541-CDS-C-australica_Contig_1021:4774..4944Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 4775..4944 +
1682586758.9336147-CDS-C-australica_Contig_1021:5028..51461682586758.9336147-CDS-C-australica_Contig_1021:5028..5146Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 5029..5146 +
1682586758.942573-CDS-C-australica_Contig_1021:5260..53411682586758.942573-CDS-C-australica_Contig_1021:5260..5341Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 5261..5341 +
1682586758.9546502-CDS-C-australica_Contig_1021:5412..55961682586758.9546502-CDS-C-australica_Contig_1021:5412..5596Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 5413..5596 +
1682586758.9652996-CDS-C-australica_Contig_1021:5705..57961682586758.9652996-CDS-C-australica_Contig_1021:5705..5796Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 5706..5796 +
1682586758.9747672-CDS-C-australica_Contig_1021:5864..59971682586758.9747672-CDS-C-australica_Contig_1021:5864..5997Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 5865..5997 +
1682586758.9844842-CDS-C-australica_Contig_1021:6219..63211682586758.9844842-CDS-C-australica_Contig_1021:6219..6321Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 6220..6321 +
1682586758.9952466-CDS-C-australica_Contig_1021:6407..65831682586758.9952466-CDS-C-australica_Contig_1021:6407..6583Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 6408..6583 +
1682586759.0057406-CDS-C-australica_Contig_1021:6659..68011682586759.0057406-CDS-C-australica_Contig_1021:6659..6801Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 6660..6801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1021.4.1

>prot_C-australica_Contig_1021.4.1 ID=prot_C-australica_Contig_1021.4.1|Name=mRNA_C-australica_Contig_1021.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=525bp
MDWAIIKKFAKNGLKDVEESDSSHCMVCLNRLVSDENEMLFCEGCDIGVH
QKCYGIERIPKGDYYCDRCSHLRKLQSKNIPDKASDIHCELCPNLHGGIK
RTTDNRWVHLACAMWARGAKIESTRQECLVDLSDVSIITVEEADKGMGQR
CEFCAKKEGYLLGCSRGKDSDRPCARKFHFLCGWFAGAFVHCKTKKGVAN
GKGYEGYPAKLDMDIMCLTHSEHERSRGHDEQFKLRRRYRMQKDLDPCKR
QREQGSRRRPPQACLYCKQVTEKPSLCRQGHVLTAAYGAKADASNWRSKT
DSGYVEVMLPGASWQKIHSNQKCSSCSDIRVCALAYGHNVRGLDAFLHGI
ATGEIKPTNATAMKQTPESALSTAKGRSKRAREDEGQADLESTVKRLEHK
AMKDSEYIMTLKVENVEKQVEVDETSKTLSMVREQRAKLIAVGQSFLRML
QEEGLPGHAVAEKQRELAAVREELRTKREQAARRQEELEDIIRRQEEEMK
KLEEEKKKLERWKEGVLNAVWKAL*
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mRNA from alignment at C-australica_Contig_1021:3858..8283+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1021.4.1 ID=mRNA_C-australica_Contig_1021.4.1|Name=mRNA_C-australica_Contig_1021.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=4426bp|location=Sequence derived from alignment at C-australica_Contig_1021:3858..8283+ (Chrysoparadoxa australica CS_1217)
GGGGATGAAGGAGGGAGGGATAGAGCATTAATACCTTTGCGGATTCCCCT
CACAGTATTATGGTGAGTGAGCTAACATAGCTTACTCCCTGGTGCCGCTC
CTTGGCCCTACCAACCCTACCCAAACCCCCTCACAAACCATTTGTCCCCA
TTACTCAAGGATTGGGCAATCATAAAGAAGTTTGCAAAGAATGGATTGAA
GGATGTCGAAGAGTCTGACTCGTCACATTGCATGGTGTGCTTGAATCGCT
TGGTCTCGGATGAGAATGAGATGCTGTTTTGCGAAGGGTGTGACATTGGT
GTGCATCAGAAATGCTATGGCATTGAGCGCATTCCCAAAGGCGACTACTA
CTGCGACCGCTGCTCTCACCTGCGGAAACTTCAAAGCAAGGTCCCCCAAT
ATTATCTCAATACCGTGTACGCCATGCTCCAGACCCCTGCTGCGCTGCTC
ACCATTTCCTCCTCAGAATATTCCCGACAAGGCATCTGACATTCACTGTG
AGCTCTGTCCCAACTTGCACGGTGGTAAGTTATTGCCCCTTTGGCCACCA
GTTAGCTTTCCTCATAAGCCAACCCAGCGTACGCCGCCCGTCAGGCATCA
AGCGGACAACTGACAATAGATGGGTGAGTTATCGATTAACAGGGGAGTTG
AAGTAGCGGCGCCACAGTGCTTAAGAAGACCCTTGTGACAAGGCTCTTAT
ACGATAGTCTCTATCAGACTGCTAGATGCGCAAGGCTCAAGTTTGTTCCA
TCATTTCGTGTCCTAAGTCCACCATGTCACGCGTAGGTACACCTGGCTTG
CGCCATGTGGGCGAGAGGAGCTAAGATTGAAAGCACACGGCAGGTAGTAG
CATTCAACGCGGCCTGCTCCATCCATGCTATTACGTCACCAGCGCCACCC
TATGCCCCTCTCTCTAGGAGTGTCTGGTTGACCTCAGCGATGTGAGCATA
ATTACTGTGGAGGAGGCAGACAAGGGCATGGGCCAACGATGCGAATTCTG
TGCAAAGAAGGAGGGCTATCTGCTCGGGTGCTCTCGCGGCAAAGACAGCG
ATCGCCCATGTGCCCGAAAGTTTCACTTCCTGTGCGGGTAAGTCCAGTTG
TTGGTAGCAACAGAGTAGAAGAAAGAACCTTGCCAGTCACCGCGCTGAAA
CTATTTTTACATGAACCGCAGCTGGTTTGCTGGCGCTTTTGTCCATTGCA
AGACCAAGAAAGGGGTAGCTAACGGCAAGGGCTATGAGGGGTACCCAGCA
AAGCTCGATATGGATATAATGTGCCTGACTCACAGTGAGGTAGGGGCAAG
CAAACTTGGCCCAAGAGACTCGCTCAATTCCTCATTTGGTCACTTACCTG
CGTGCCCAGTAACCAACTCTCTCCCTCATTTTCTCTGTGGCTTCTGTGCC
CAGCACGAGCGGAGCCGAGGCCACGACGAGCAATTCAAGTTGAGGAGGAG
GTACAGGATGCAGAAAGACCTAGACCCATGCAAGGTGAAGCTCATTGACG
TGGCAAGCGATCCACGACGGCCTGACCTAATCGAGAAAACGCCTACGCGC
CCCAGCGCCAGCGCGAGCAAGGCAGCCGAAGGAGGCCGCCTCAGGCCTGC
TTGTACTGCAAACAAGTGACAGAGAAGCCAAGCCTGTGTCGGCAAGGTCA
CGTCCTCACAGCCGCTTACGGAGCGAAAGCAGACGCCTCTAACTGGAGGT
CGAAGACTGACAGCGGCTACGTTGAAGTTATGCTTCCTGGTTGGTGCAGT
GCAGCTTCATGCGGCAAAGAGTGATGTGGCGGAGGAGACCTTCGCTTTTC
ACCCAACGAATTGCTCAAAACTGTGCCTCCCTCTGCTTGCTAAATCAGGC
GCATCCTGGCAGAAGATTCATTCCAACCAAAAGTGCAGCTCCTGCAGTGA
CATCAGGGTTTGCGCACTGGCATATGGTCACAATGTCAGGTACCGAGACC
ATTCCCCTTTAATAGCTGAGCAATCAGTGTTGCTTCATTGCCCCTGTTCT
TAAATAGGGGGCTTGATGCTTTTTTGCACGGCATTGCCACGGGAGAAATC
AAGCCAACCAACGCGACGGCCATGAAGCAAACCCCCGAGAGTGCACTTTC
CACGGCTAAGGGAAGGTCCAAGAGAGCCCGGGAAGATGAGGTTGGCTTAT
GTTACTGTGTTTGCCTTATCTCAGCCTGTTGGCGTGCTTTTCAGCCCTAG
TTGGAAGAAGGAAGGCTCAGCCTAACGTCACCTGATCAGGCTCTCTAGCC
ACTACACCCAGGACAGCCAGACATGATTTGATCCGGTGGATCCCTGAGTC
ATATATTACCTCGCTACTTCTGTCTTTTTTGGTGAATAATTTGACTGAAT
TGAACCCAACAGGGTCAGGCAGATTTAGAGAGCACCGTAAAGCGGCTAGA
GCACAAGGCCATGAAAGATTCAGAGTATATCATGACTTTGAAAGTGGAAA
ATGTTGAGAAGCAGGTGGGACAGGAGCACCATTGGGCGGCTCATTTGGGG
CTGGTGTCAGATGAACTCGTTCCCCTGCTGACCAGGTATGCCCCCAACAG
GTAGAGGTAGATGAGACAAGCAAGACGCTATCTATGGTGAGGGAGCAGCG
TGCCAAGCTGATTGCTGTGGGACAGAGCTTTCTGAGGATGCTGCAGGAGG
AGGGGCTTCCTGGTCACGCTGTTGCAGAGAAGCAGCGAGAGTTAGCCGCT
GTTAGGGAGGAGCTCAGAACGAAGAGGTAACATGAGTTGAGCGCGCCAGC
CTAGCTTGAAAGGATATCTTGAGCCTGATGCACTGTGCGTGATCTACTCC
AGAGAGCAAGCAGCACGAAGGCAAGAAGAGCTGGAGGATATAATTAGGAG
GCAAGAAGAGGAAATGAAGAAACTTGAGGAGGAAAAGAAGAAGCTGGAGC
GCTGGAAGGAAGGTGTATTGAATGCTGTTTGGAAGGCGTTGTGAGCGCTT
TTGACGTTTTGGACTTTCCACGTCTCACGTCTGCAAGAGCTTTAGAATGA
GAGGCGCAGCTGCTGTACAAGCCATGATGATTGCTCTGCAGAAAAGATTG
TCGGGGTTGGAGCACGTCAGCAAGGGTTTAAACCATTAATGCAAGAAAAA
CGTACCCTGCTTTGGATGATGCTGCCTCTGCTCCACTCACTAGTGGACCC
AAGGCTTCCTGCGCAAGTCCAGCACAACCCCAAAGTTAGGTGAAGAAAAA
GGCAAATTGGCTCACTGTAACCAATTGATACACTTGCAACATGATATGCA
TGCATAAGATGTCAAGTGGGGTTAGCCCAATATTGTCTCCTCTTTCCATC
TATATTTGAAGGGTCAAGTACTCAACTTTCCCTTTTCTGAGGATCCATAG
CCAGAAACGGCAGAGAGCGCCCACGCTAATACTGCTGGAAAGATTGGGTC
CCGTCGCATTGCTGTGACCCAGAGTCCAAGGCCAACGGCAGCATGAATGC
TGTGTGGGGAGCAAACCTTGAGATGAGTTGGTGGTAAAAAGGGTAAAATC
CAGGGAGAGAAACAGACCTGAACATGGAAACTGCCAACTTGAGGCCGTTT
TGAGAGGTGAGTGAAGCAACATGCCTGTTTATGTTCACTAGTGTTGCCGC
AGTGATCCTGTACGAGAAAAAAAAAGCGTGCATGATTTGGGTAGGAAAGT
TGTGTCAGGTGCAAAGGAGGTTGTCAATGACTTTACCATCCTAGATGCAT
CCCCAGTGGAACCATAGCGCATGTAATTCCGTATGCGTCTGCAGCAAAGA
GGAGCCGGAGGTGGTGAGGCGGAACCTCTTTTCTTTCTTTCTTTTTCTTA
TTTAATTTTTACCGTCAGCCTCGTTCAATATTATGTTGGTTGCTCCATAC
AGAGCGCCACCGGTGACAGCCAAGAGGGAAGCAGGTAGCCATAGTAGCCC
GCGTGAGGCAGCCCAGGGTCTGAAACTAGCGCACCATAAGGATTGGCCAG
CCATGGCAGCTGTGAACCAAGGTGAAACATTAGGCAGCCATTTGGAGTCA
CGATTCATTGGGAGGGCTTGGTAGATACTGAACACGGTCTCCCCCAAAAA
GATGGGACCCCAAATGGCGAAAGCCCACGGTTGAGGCCTGAAGAGGGGAA
GCAGCTTTTCTTCTCCAGCCCCCCTTTGGCTGTCTAGCCTCCCCCCTCTG
GTAACAGCAAACACGTTTACACAGTAGGCAGCAGCAGTCAACCCCTGAGG
AGGAAAAGGGGACTAAGGAAAGAAGGGAGAGACAGGAGGCCGAGAGGGCA
CACCTGCCAAGGTGGAGGGAGGATAGGAAGAAGGGAGGAGAGAGAGGGCA
CACCTGCCAAGGCTCCAGAGGAAGAAGCCCCAAGATAGTCATTTTCACGA
AAAAATGACCTGTCGCCTGTCGCCTGTCGCCTGTCGCCTCGCCACTTGGG
GAAGTGTGGGATGAAAGAGAGAGTTC
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Coding sequence (CDS) from alignment at C-australica_Contig_1021:3858..8283+

>mRNA_C-australica_Contig_1021.4.1 ID=mRNA_C-australica_Contig_1021.4.1|Name=mRNA_C-australica_Contig_1021.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1575bp|location=Sequence derived from alignment at C-australica_Contig_1021:3858..8283+ (Chrysoparadoxa australica CS_1217)
ATGGATTGGGCAATCATAAAGAAGTTTGCAAAGAATGGATTGAAGGATGT
CGAAGAGTCTGACTCGTCACATTGCATGGTGTGCTTGAATCGCTTGGTCT
CGGATGAGAATGAGATGCTGTTTTGCGAAGGGTGTGACATTGGTGTGCAT
CAGAAATGCTATGGCATTGAGCGCATTCCCAAAGGCGACTACTACTGCGA
CCGCTGCTCTCACCTGCGGAAACTTCAAAGCAAGAATATTCCCGACAAGG
CATCTGACATTCACTGTGAGCTCTGTCCCAACTTGCACGGTGGCATCAAG
CGGACAACTGACAATAGATGGGTACACCTGGCTTGCGCCATGTGGGCGAG
AGGAGCTAAGATTGAAAGCACACGGCAGGAGTGTCTGGTTGACCTCAGCG
ATGTGAGCATAATTACTGTGGAGGAGGCAGACAAGGGCATGGGCCAACGA
TGCGAATTCTGTGCAAAGAAGGAGGGCTATCTGCTCGGGTGCTCTCGCGG
CAAAGACAGCGATCGCCCATGTGCCCGAAAGTTTCACTTCCTGTGCGGCT
GGTTTGCTGGCGCTTTTGTCCATTGCAAGACCAAGAAAGGGGTAGCTAAC
GGCAAGGGCTATGAGGGGTACCCAGCAAAGCTCGATATGGATATAATGTG
CCTGACTCACAGTGAGCACGAGCGGAGCCGAGGCCACGACGAGCAATTCA
AGTTGAGGAGGAGGTACAGGATGCAGAAAGACCTAGACCCATGCAAGCGC
CAGCGCGAGCAAGGCAGCCGAAGGAGGCCGCCTCAGGCCTGCTTGTACTG
CAAACAAGTGACAGAGAAGCCAAGCCTGTGTCGGCAAGGTCACGTCCTCA
CAGCCGCTTACGGAGCGAAAGCAGACGCCTCTAACTGGAGGTCGAAGACT
GACAGCGGCTACGTTGAAGTTATGCTTCCTGGCGCATCCTGGCAGAAGAT
TCATTCCAACCAAAAGTGCAGCTCCTGCAGTGACATCAGGGTTTGCGCAC
TGGCATATGGTCACAATGTCAGGGGGCTTGATGCTTTTTTGCACGGCATT
GCCACGGGAGAAATCAAGCCAACCAACGCGACGGCCATGAAGCAAACCCC
CGAGAGTGCACTTTCCACGGCTAAGGGAAGGTCCAAGAGAGCCCGGGAAG
ATGAGGGTCAGGCAGATTTAGAGAGCACCGTAAAGCGGCTAGAGCACAAG
GCCATGAAAGATTCAGAGTATATCATGACTTTGAAAGTGGAAAATGTTGA
GAAGCAGGTAGAGGTAGATGAGACAAGCAAGACGCTATCTATGGTGAGGG
AGCAGCGTGCCAAGCTGATTGCTGTGGGACAGAGCTTTCTGAGGATGCTG
CAGGAGGAGGGGCTTCCTGGTCACGCTGTTGCAGAGAAGCAGCGAGAGTT
AGCCGCTGTTAGGGAGGAGCTCAGAACGAAGAGAGAGCAAGCAGCACGAA
GGCAAGAAGAGCTGGAGGATATAATTAGGAGGCAAGAAGAGGAAATGAAG
AAACTTGAGGAGGAAAAGAAGAAGCTGGAGCGCTGGAAGGAAGGTGTATT
GAATGCTGTTTGGAAGGCGTTGTGA
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