mRNA_C-australica_Contig_1021.4.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_1021.4.1 vs. uniprot
Match: D8LCC2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCC2_ECTSI) HSP 1 Score: 144 bits (363), Expect = 2.450e-32 Identity = 88/217 (40.55%), Postives = 116/217 (53.46%), Query Frame = -3 Query: 1976 AAAYCVNVFAVTRGGRLDS--QRGAGEEKLLPLFRPQPWAFAIWGPIFLGETVFSIYQALPMN--RDSKWLPNVSPWFTAAMAGQSLWCASFRPWAASRGLLWLPASLLAVTGGALYGATNIILNEVQTHTELHALWF---------HWGCI*DGSLRQH**T*TGMLLH-SPLKTASSWQFPCSGIHAAVGLGLWVTAMRRDPIFPAVLAWALSAV 2584
A+A+ +N+ A GGRLD Q G+ + + P WAFAIWGPIF GE ++ +Q +P+ R S WL ++SPWF AM Q+LWC SFRPWA GLLWLPA LL TG AL G + IL E +++ L + H G I +L G + L + AAV LG+ +T +R DPI+ AV+AWAL AV
Sbjct: 315 ASAWALNMRATFGGGRLDGIGQSGSSGTRPVRFLSPAGWAFAIWGPIFFGEAIYVAFQLMPLPSIRGSWWLSDISPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVAL-GGVHRILREAWFTSDMTVLQYLAVHVPLSLHLGWISCATLVNL----NGYFATINKLSNRVKLGLALGSVVAAVALGVAITLLREDPIYAAVVAWALWAV 526
BLAST of mRNA_C-australica_Contig_1021.4.1 vs. uniprot
Match: A0A835Z9R9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9R9_9STRA) HSP 1 Score: 135 bits (340), Expect = 2.380e-31 Identity = 91/222 (40.99%), Postives = 124/222 (55.86%), Query Frame = -3 Query: 1973 AAAYCVNVFAVTRGGRLD----SQRGAGEEKLLPLFRPQPWAFAIWGPIFLGETVFSIYQALPMNR--DSKWLPNVSPWFTAAMAGQSLWCASFRPWAASRGL--LWLPASLLAVTGGALYGATNIILNEVQTHTEL----HALWF-----HWGCI*DGSLRQH**T*TGMLLHS-PLKTASSWQFPCSGIHAAVGLGLWVTAMRRDPIFPAVLAWALSAVS 2584
A Y +N AV GRLD SQ A +++ F P WAFAIW PIF GE +F IYQALP+ R S WL +SP+F+ AM Q+LWC +FRPWA + GL W+PA LL + AL GA I++ ++ +EL +AL F H+G + +L G + + P A + I+ AV +G VT RRDPI+ AV+AWAL+A++
Sbjct: 43 AVTYLLNFAAVRVPGRLDGRQWSQDAATQQRY---FAPAGWAFAIWAPIFAGELLFVIYQALPLARVRTSWWLAELSPYFSGAMLLQTLWCGAFRPWARAAGLNLQWIPALLLGLGAAALGGAHGILVQALED-SELSPLSYALAFVPLALHFGWLTAAALVNA----NGFVAAAAPRSHAVKASAAIASIYLAVLVGAAVTFARRDPIYAAVIAWALAAIA 256
BLAST of mRNA_C-australica_Contig_1021.4.1 vs. uniprot
Match: A0A7S2UXB1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXB1_9STRA) HSP 1 Score: 135 bits (340), Expect = 2.930e-31 Identity = 79/214 (36.92%), Postives = 123/214 (57.48%), Query Frame = -3 Query: 1973 AYCVNVFAVTRGGRLDSQRGAG--EEKLLPLFRPQPWAFAIWGPIFLGETVFSIYQALPMNR-DSKWLPNVSPWFTAAMAGQSLWCASFRPWAASRGLLWLPASLLAVTGGALYGATNIILNEVQTHTELHALWF---------HWGCI*DGSLRQH**T*TGMLLHSPLKTASSWQFPCSGIHAAVGLGLWVTAMRRDPIFPAVLAWALSAVS 2578
A+ +N++AV+ GRLD + A +E + F P WAFAIWGPIFLGE +F+ +Q LP+ + ++P ++ W+ A+A QSLWC++FRPWA G LWLPA+LL +T AL GA ++ + + + E+ L + H+G I SL + +K+ +S +G+ AA +G W R +P +P V++WAL+AV+
Sbjct: 65 AWALNMWAVSVPGRLDGSQAAALSDEGEIRFFTPAGWAFAIWGPIFLGEALFAFFQLLPIETVQTSFIPKLTVWWIPAVACQSLWCSAFRPWAKKSGFLWLPAALLTLTAVALGGAHKVLFDALHSE-EVSMLEYIIVNIPLTLHFGWITAASLVSWNGYLASVTASISIKSLASSASIVAGVIAAALVG-W---NRIEPFYPLVVSWALAAVA 273
BLAST of mRNA_C-australica_Contig_1021.4.1 vs. uniprot
Match: A0A7S0WI04_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WI04_9CHLO) HSP 1 Score: 130 bits (327), Expect = 2.780e-29 Identity = 82/231 (35.50%), Postives = 117/231 (50.65%), Query Frame = -3 Query: 1946 VPAAAYCVNVFAVTRGGRLDSQRGAGEEKLLP------LFRPQPWAFAIWGPIFLGETVFSIYQALPMNRDSKWLPNVSPWFTAAMAGQSLWCASFRPWAASRGLLWLPASLLAVTGGALYGATNIILNEV----------QTHTELHALWFHWGCI*DGSLRQH**T*TGMLLHSPLKTASSWQFPCSGIHAAVGLGLWVTAMRRDPIFPAVLAWALSAVSGYGSSEKGK 2590
V AAA+C NV+AV+ GGR+DS R A + P L P WAFAIWG I+L E++F++ Q LP D WL +VSPW+ AA QSLWCA+FR WA G+ W+ A+LL T AL GA ++ Q L H+G + SL + + + + + +H A +G V +R D ++ LAWAL+A+ ++KG+
Sbjct: 78 VNAAAFCPNVWAVSSGGRIDS-RYANTNGVPPSDEYRSLVTPSGWAFAIWGVIYLTESIFTVVQLLPSMTDVTWLLDVSPWWVAANIYQSLWCAAFRDWARPSGVFWISAALLTATAIALAGAEAVVTGPSVGTGSWTAVGQRVLAQMPLSLHFGWVTAASLVNWNSFFAVLYRDAHISLRTQIWLAFASLHLAYIVGSIVAVVRMDFLYSLTLAWALTAIK----TDKGR 303
BLAST of mRNA_C-australica_Contig_1021.4.1 vs. uniprot
Match: A0A2D4CCC1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CCC1_PYTIN) HSP 1 Score: 131 bits (329), Expect = 2.860e-27 Identity = 68/234 (29.06%), Postives = 107/234 (45.73%), Query Frame = 3 Query: 105 DVEESDSSHCMVCLNRLVSDENEMLFCEGCDIGVHQKCYGIERIPKGDYYCDRCSHLRKLQSKNIPDKASDIHCELCPNLHGGIKRTTDNRWVHLACAMWARGAKIESTRQECLVDLSDVSIIT------------------VEEADKG-----------MGQRCEFCAKKEGYLLGCSRGKDSDRPCARKFHFLCGWFAGAFVHCKTKKGVANGKGYEGYPAKLDMDIMCLTH 719
+ E D C+VC + + N ++FC+ CD+ VHQ+CYG++R+P ++YCDRC + ++ D A++++C+LCP G KRT D +WVH+ CA+W G I + L LS++ ++ +E G G C++C G L C C +H LCGWF G + + G Y G A L+ ++C H
Sbjct: 727 EAEPVDDGTCVVCFDGQSPESNPIIFCDRCDLAVHQRCYGVQRVPSNEFYCDRC------RPEDTHDPAAEVYCQLCPLRDGAFKRTVDGKWVHVVCALWCPGVWIGN-----LQTLSEIQLVVNATHRTRFADTTAELSQLIEGTKDGHAGSVLGPRLETGSLCQYCRVACGRTLQCCHA-----GCTVSYHPLCGWFEGLPLTVSLSEF---GFIYSGGGAGLEFKMLCANH 941
BLAST of mRNA_C-australica_Contig_1021.4.1 vs. uniprot
Match: A0A024UN41_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UN41_9STRA) HSP 1 Score: 129 bits (323), Expect = 1.480e-26 Identity = 70/225 (31.11%), Postives = 101/225 (44.89%), Query Frame = 3 Query: 105 DVEESDSSHCMVCLNRLVSDENEMLFCEGCDIGVHQKCYGIERIPKGDYYCDRCSHLRKLQSKNIPDKASDIHCELCPNLHGGIKRTTDNRWVHLACAMWARGA---KIESTRQECLVDLSDVSIITVEEADKGM----------------GQRCEFCAKKEGYLLGCSRGKDSDRPCARKFHFLCGWFAGAFVHCKTKKGVANGKGYEGYPAKLDMDIMCLTHS 722
D++ + C+VC++ D N ++FC+ CD+ VHQ+CYG+ IPK D+YCD+CS + +P C LCP+ HG +K+T + WVH+ CA+W K+ + DLS V T + G G C C G + C R C FH LC WFAG ++H + A G G L + CL H+
Sbjct: 839 DLQSFEDGTCVVCMDGYSEDSNPIIFCDKCDVAVHQRCYGVATIPKSDFYCDKCS----AKGPVVPQ------CALCPHPHGALKQTVEGLWVHVFCALWCPTTFLVKVPRMLFQLTPDLSKVRYATTSIDELGSTTALADVVGLPPPVQRGGLCRVCRIATGCTIQC-------RNCPASFHPLCAWFAGCYMHVQV---AACGYVCAGGGQGLLYTLTCLDHT 1043
BLAST of mRNA_C-australica_Contig_1021.4.1 vs. uniprot
Match: T0S3T8_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S3T8_SAPDV) HSP 1 Score: 128 bits (321), Expect = 2.520e-26 Identity = 77/251 (30.68%), Postives = 109/251 (43.43%), Query Frame = 3 Query: 51 HSIMDWAIIKKFAKNGLKDVE---ESDSSH--------CMVCLNRLVSDENEMLFCEGCDIGVHQKCYGIERIPKGDYYCDRCSHLRKLQSKNIPDKASDIHCELCPNLHGGIKRTTDNRWVHLACAMWARGAKIESTRQECL----------VDLSDVSIITVEEADKG-------MGQRCEFCAKKEGYLLGCSRGKDSDRPCARKFHFLCGWFAGAFVHCKTKKGVANGKGYEGYPAKLDMDIMCLTH 719
H W + G KD+ ESD + C++C + + D N ++FCE CDI VHQ+CYGI IPK D+YCD+C LRKL S + + C+LCP G +K T + WVH+ACA+W+ ++ + L + + +T AD G C C G + C R D C H LC W+AG +H A G + G L ++ C H
Sbjct: 781 HEYAWWKAVCLCVIKGTKDLPFLPESDDTRLQPFEDGTCVICFDGISEDGNPIIFCEACDIAVHQRCYGIAEIPKTDFYCDKCIALRKLPS-------APVFCQLCPMRDGALKMTKEGLWVHVACALWSPNTQLVHIPRMLLQLSMQPHVRFANFDTATAMTSPLADVADLPPPLLAGGLCTICRVATGRTVRC-RHPD----CGTSMHPLCAWYAGWHMHASV---AACGYVHVGGGQGLVFNVYCDAH 1016
BLAST of mRNA_C-australica_Contig_1021.4.1 vs. uniprot
Match: A0A6V1K7Z9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1K7Z9_HETAK) HSP 1 Score: 120 bits (301), Expect = 1.270e-25 Identity = 75/226 (33.19%), Postives = 118/226 (52.21%), Query Frame = -3 Query: 1946 YCVNVFAVTRGGRLDSQRGAGE----EKLLPLFRPQPWAFAIWGPIFLGETVFSIYQALPMN--RDSKWLPNVSPWFTAAMAGQSLWCASFRPWAASRGLLWLPASLLAVTGGALYGATNIILNEVQTHT-ELHALWF---------HWGCI*DGSLRQH**T*TGMLLHSPLKTASSWQFPCSGIHAAVGLGLWVTAMRRDPIFPAVLAWALSAVSGYGSSEKGK 2575
+ N +A R GR+D ++ E +++ F P WAF IW PIF+GET+F YQALP+N ++ +L +SP++ AA+ QS+W RPWA G W+ A+LL +TG AL G ++ ++ T +L+ L F H+G + L G+L +PL + F + + A +G+ V A R DP+ L+WAL+ ++ + EK K
Sbjct: 106 FLFNRWAGKRPGRMDMKQPRAEASQKKEVARFFTPAGWAFRIWIPIFIGETIFVFYQALPINYIKNKDFLAMLSPFWIAAIGFQSIWTFCARPWAVENGYGWIQAALLVLTGVALSGVHKVMTSQPHTLVGDLNILDFIVAQIPLSLHFGWMMAAGLVSV----NGVLARTPLTIRAKHLFSDASVVVATVIGVVVAAKRTDPVVAFALSWALAGLADDKAWEKLK 327
BLAST of mRNA_C-australica_Contig_1021.4.1 vs. uniprot
Match: A0A8K1C640_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C640_PYTOL) HSP 1 Score: 125 bits (315), Expect = 1.300e-25 Identity = 74/240 (30.83%), Postives = 109/240 (45.42%), Query Frame = 3 Query: 78 KKFAKNGLKDVEESDSSHCMVCLNRLVSDENEMLFCEGCDIGVHQKCYGIERIPKGDYYCDRCSHLRKLQSKNIPDKASDIHCELCPNLHGGIKRTTDNRWVHLACAMWARGAKIESTRQECLVDLSDVS-----IITVEEADKGM---------------------GQRCEFCAKKEGYLLGCSRGKDSDRPCARKFHFLCGWFAGAFVHCKTKKGVANGKGYEGYPAKLDMDIMCLTH 719
KK +G + E D C+VC + + N ++FC+ CD+ +HQ+CYGI+R+P ++YCDRC +L+ + D A+++ LCP G KRT D +WVH+ CA+W G I R + L D + I TV E + + G C +C G + CS C+ +H LCGWF G + + NG Y G A L + C H
Sbjct: 682 KKSGDDG--EEEPVDDGTCVVCFDGQSPESNPIIFCDRCDLAIHQRCYGIQRVPSSNFYCDRC----RLEDEGR-DPAAEVXXXLCPLRDGAFKRTIDGKWVHVVCALWCPGVWIGDLRNLADIKLVDAAHTTRFIDTVAEVNALIAGSKDQEKTQVQSKPACRIEHGSLCSYCKVTCGRTIRCSHP-----GCSVSYHPLCGWFEGLPMTVAISE---NGFVYCGGGAGLTFKMSCADH 906
BLAST of mRNA_C-australica_Contig_1021.4.1 vs. uniprot
Match: A0A1V9YGY2_9STRA (Kinesin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGY2_9STRA) HSP 1 Score: 125 bits (314), Expect = 1.690e-25 Identity = 68/222 (30.63%), Postives = 98/222 (44.14%), Query Frame = 3 Query: 108 VEESDSSHCMVCLNRLVSDENEMLFCEGCDIGVHQKCYGIERIPKGDYYCDRCSHLRKLQSKNIPDKASDIHCELCPNLHGGIKRTTDNRWVHLACAMWARGAKIESTRQECLVDLSDVSIITVEEADKGM------------------GQRCEFCAKKEGYLLGCSRGKDSDRPCARKFHFLCGWFAGAFVHCKTKKGVANGKGYEGYPAKLDMDIMCLTH 719
V+ + C++C + + D N ++FCE CDI VHQ+CYG+ IPK D+YCD+C LRK + + C+LCP G +K+T + WVH+ACA+W+ A++ + LV LS I+ D G C C G + C C H LC W+AG + A G + G L D+ C H
Sbjct: 789 VQPFEEGTCVICFDGVSEDSNPIIFCEACDIAVHQRCYGVADIPKHDFYCDKCVALRKAPAL--------VFCQLCPLRDGALKQTKEGLWVHVACALWSPAAQLAHIPR-MLVHLSPQPIVRFASYDPATAMTLPLADVADLPPPLVSGGLCALCRVATGCTVCCRAP-----GCGTAMHALCAWYAGLHLRVAV---AACGYVHVGGGQGLTFDVFCPAH 993 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1021.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1021.4.1 >prot_C-australica_Contig_1021.4.1 ID=prot_C-australica_Contig_1021.4.1|Name=mRNA_C-australica_Contig_1021.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=525bp MDWAIIKKFAKNGLKDVEESDSSHCMVCLNRLVSDENEMLFCEGCDIGVHback to top mRNA from alignment at C-australica_Contig_1021:3858..8283+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1021.4.1 ID=mRNA_C-australica_Contig_1021.4.1|Name=mRNA_C-australica_Contig_1021.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=4426bp|location=Sequence derived from alignment at C-australica_Contig_1021:3858..8283+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1021:3858..8283+ >mRNA_C-australica_Contig_1021.4.1 ID=mRNA_C-australica_Contig_1021.4.1|Name=mRNA_C-australica_Contig_1021.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1575bp|location=Sequence derived from alignment at C-australica_Contig_1021:3858..8283+ (Chrysoparadoxa australica CS_1217)back to top |