|
|
Homology
BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A0B3S4P9_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=472 Tax=cellular organisms TaxID=131567 RepID=A0A0B3S4P9_9RHOB) HSP 1 Score: 336 bits (862), Expect = 1.700e-115 Identity = 156/166 (93.98%), Postives = 162/166 (97.59%), Query Frame = 1 Query: 1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 498
VQFTLPKNS+IKTGKTWPKP+ AKN+RKF IYRWNPDDGKNPQVDTYF+DMD CGPMVLDALIKIKNE+DPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDE+ GDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL
Sbjct: 2 VQFTLPKNSQIKTGKTWPKPEGAKNVRKFQIYRWNPDDGKNPQVDTYFLDMDACGPMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEISGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 167
BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A520P6G8_9RHOB (Succinate dehydrogenase iron-sulfur subunit (Fragment) n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A520P6G8_9RHOB) HSP 1 Score: 328 bits (840), Expect = 2.800e-113 Identity = 152/166 (91.57%), Postives = 161/166 (96.99%), Query Frame = 1 Query: 1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 498
VQ TLPKNS+I+ GKTWPKP A NLRKFSIYRW+PDDG+NP+VDTYF+DMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYG+DE++GDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL
Sbjct: 2 VQLTLPKNSRIRRGKTWPKPDGATNLRKFSIYRWSPDDGENPRVDTYFVDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGMDEIKGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 167
BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A221JWY2_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=17 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A221JWY2_9RHOB) HSP 1 Score: 327 bits (839), Expect = 5.410e-112 Identity = 150/166 (90.36%), Postives = 161/166 (96.99%), Query Frame = 1 Query: 1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 498
VQ TLPKNS+IKTGKTWPKP+ A NLRKF IYRWNPDDGKNPQVDTY+ID+D CGPM+LDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYG+DEV+GDVKIYPLPHMPVVKDLIPDLTHFYAQHAS+MPWLETKTNRPAKEW+QS+EDR+KLDGL
Sbjct: 2 VQLTLPKNSRIKTGKTWPKPEGATNLRKFQIYRWNPDDGKNPQVDTYWIDLDACGPMILDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGMDEVKGDVKIYPLPHMPVVKDLIPDLTHFYAQHASVMPWLETKTNRPAKEWRQSVEDREKLDGL 167
BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A0W7WQ30_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=3 Tax=Rhodobacterales TaxID=204455 RepID=A0A0W7WQ30_9RHOB) HSP 1 Score: 323 bits (828), Expect = 2.650e-110 Identity = 152/167 (91.02%), Postives = 160/167 (95.81%), Query Frame = 1 Query: 1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEG-DVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 498
VQFTLPKNSKI+TGKTWPKP+ AK RKF IYRWNPDDG+NP+VDTYF+DM+TCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDE+ +VKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL
Sbjct: 2 VQFTLPKNSKIRTGKTWPKPEGAKKTRKFQIYRWNPDDGENPRVDTYFVDMETCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEISSAEVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 168
BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A2R8BN11_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=2 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A2R8BN11_9RHOB) HSP 1 Score: 323 bits (827), Expect = 3.630e-110 Identity = 149/166 (89.76%), Postives = 159/166 (95.78%), Query Frame = 1 Query: 1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 498
VQFTLPKNSK++ GKTWPKP+ A N+RKF IYRW+PD G+NP+VDTYF+DMD CGPM+LDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEV+GDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRP KEWKQSIEDRKKLDGL
Sbjct: 2 VQFTLPKNSKMRVGKTWPKPEGATNVRKFQIYRWDPDTGENPRVDTYFVDMDNCGPMILDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVKGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPRKEWKQSIEDRKKLDGL 167
BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A5C5GC27_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=2 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A5C5GC27_9RHOB) HSP 1 Score: 322 bits (826), Expect = 5.160e-110 Identity = 149/166 (89.76%), Postives = 157/166 (94.58%), Query Frame = 1 Query: 1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 498
VQ TLPKNS+I GKTWPKP A NLRK +YRWNPDDGKNP++DTY+IDMD CGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDE++GD+KIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL
Sbjct: 2 VQLTLPKNSRITVGKTWPKPSGATNLRKVDVYRWNPDDGKNPRLDTYWIDMDNCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEIDGDIKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 167
BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A0D1DCB9_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=3 Tax=Rhodobacterales TaxID=204455 RepID=A0A0D1DCB9_9RHOB) HSP 1 Score: 321 bits (823), Expect = 1.480e-109 Identity = 148/166 (89.16%), Postives = 157/166 (94.58%), Query Frame = 1 Query: 1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 498
VQFTLPKNSKI TGKTWPKP+ A L+ F IYRWNP+DGKNP+VDTYF+D+DTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDG NTLAC YG+DEV+GDVKIYPLPHMPVVKDLIPDLTHFYAQHAS+MPWLETKTN PAKEWKQSIEDRKKLDGL
Sbjct: 2 VQFTLPKNSKITTGKTWPKPEGANRLKTFKIYRWNPEDGKNPRVDTYFVDLDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGANTLACTYGIDEVDGDVKIYPLPHMPVVKDLIPDLTHFYAQHASVMPWLETKTNTPAKEWKQSIEDRKKLDGL 167
BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A2T4J4H5_FUSBL (Succinate dehydrogenase iron-sulfur subunit n=2 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A2T4J4H5_FUSBL) HSP 1 Score: 321 bits (823), Expect = 1.480e-109 Identity = 149/166 (89.76%), Postives = 158/166 (95.18%), Query Frame = 1 Query: 1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 498
VQ TLPKNSKI+TGKTWPKP AKNLR F IYRW+PDDG+NP++DTYF+DMD+CGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDE++GDVKIYPLPHM VVKDLIPDLTHFYAQHASIMPWLETKTNRP KEWKQSI DRKKLDGL
Sbjct: 2 VQLTLPKNSKIRTGKTWPKPAGAKNLRTFRIYRWSPDDGENPRIDTYFVDMDSCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEIKGDVKIYPLPHMEVVKDLIPDLTHFYAQHASIMPWLETKTNRPGKEWKQSIADRKKLDGL 167
BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: K2HDN7_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=1 Tax=Oceaniovalibus guishaninsula JLT2003 TaxID=1231392 RepID=K2HDN7_9RHOB) HSP 1 Score: 320 bits (819), Expect = 6.000e-109 Identity = 147/166 (88.55%), Postives = 158/166 (95.18%), Query Frame = 1 Query: 1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 498
VQ TLPKNSKI+TGKTWPKP+ A NLRK IYRWNPDDG+NP+VDTYFIDMD+CGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEV+GD++IYPLPHMPVVKDLIPDLTHFYAQHAS+MPWLET TN P KEW+QSI+DRKKLDGL
Sbjct: 2 VQLTLPKNSKIRTGKTWPKPEGATNLRKLDIYRWNPDDGENPRVDTYFIDMDSCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVKGDIRIYPLPHMPVVKDLIPDLTHFYAQHASVMPWLETTTNEPRKEWRQSIDDRKKLDGL 167
BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A1X6YS36_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=1 Tax=Roseovarius albus TaxID=1247867 RepID=A0A1X6YS36_9RHOB) HSP 1 Score: 320 bits (819), Expect = 6.210e-109 Identity = 149/167 (89.22%), Postives = 160/167 (95.81%), Query Frame = 1 Query: 1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGD-VKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 498
VQF LPKNS++ +GKTWPKP+ A N+RKF IYRWNPDDG+NP+VDTYF+DMDTCGPM+LDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYG+DEV GD VKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDR+KLDGL
Sbjct: 2 VQFKLPKNSRMVSGKTWPKPEGASNVRKFQIYRWNPDDGQNPRVDTYFVDMDTCGPMILDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGMDEVRGDTVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDREKLDGL 168
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Pagesback to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 0 |
| Seed ortholog | 1423144.Gal_03123 |
| Preferred name | sdhB |
| PFAMs | Fer2_3,Fer4_10,Fer4_17,Fer4_8 |
| Model size | 498 |
| Max annot lvl | 28211|Alphaproteobacteria |
| KEGG rclass | RC00045 |
| KEGG ko | ko:K00240 |
| KEGG Reaction | R02164 |
| KEGG Pathway | ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200 |
| KEGG Module | M00009,M00011,M00149,M00173,M00374,M00376 |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Evalue | 1.32e-114 |
| EggNOG OGs | COG0479@1|root,COG0479@2|Bacteria,1MVHS@1224|Proteobacteria,2TQYF@28211|Alphaproteobacteria,34FA6@302485|Phaeobacter |
| EC | 1.3.5.1,1.3.5.4 |
| Description | 2Fe-2S iron-sulfur cluster binding domain |
| Cds size | 498 |
| COG category | C |
| BRITE | ko00000,ko00001,ko00002,ko01000 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682586758.5554593-CDS-C-australica_Contig_10202:1..499 | 1682586758.5554593-CDS-C-australica_Contig_10202:1..499 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_10202 2..499 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10202.1.1 >prot_C-australica_Contig_10202.1.1 ID=prot_C-australica_Contig_10202.1.1|Name=mRNA_C-australica_Contig_10202.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=166bp
VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFID
MDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACI
YGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPA
KEWKQSIEDRKKLDGL back to topmRNA from alignment at C-australica_Contig_10202:2..499- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-australica_Contig_10202.1.1 ID=mRNA_C-australica_Contig_10202.1.1|Name=mRNA_C-australica_Contig_10202.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=498bp|location=Sequence derived from alignment at C-australica_Contig_10202:2..499- (Chrysoparadoxa australica CS_1217)
GTACAGTTCACGCTCCCCAAGAATTCAAAGATCAAGACCGGCAAGACATG
GCCCAAACCGAAGGATGCCAAAAACCTGCGCAAGTTCAGCATCTACCGCT
GGAATCCGGATGACGGCAAAAACCCGCAGGTTGATACCTATTTCATCGAC
ATGGACACCTGCGGTCCGATGGTTCTAGACGCGCTGATCAAGATCAAGAA
CGAGATCGATCCGACGCTGACCTTCCGCCGGTCTTGCCGCGAAGGGATCT
GTGGTTCCTGCGCGATGAACATCGACGGGATCAACACGTTGGCGTGCATC
TATGGCTTGGACGAGGTCGAGGGCGACGTCAAAATCTATCCGCTGCCGCA
CATGCCGGTGGTCAAGGATCTGATCCCGGACCTGACGCATTTCTATGCTC
AGCACGCCAGCATCATGCCCTGGCTGGAAACCAAGACCAACCGCCCCGCC
AAGGAGTGGAAGCAGTCGATCGAAGACCGTAAAAAGCTGGACGGTCTG back to topCoding sequence (CDS) from alignment at C-australica_Contig_10202:2..499- >mRNA_C-australica_Contig_10202.1.1 ID=mRNA_C-australica_Contig_10202.1.1|Name=mRNA_C-australica_Contig_10202.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=498bp|location=Sequence derived from alignment at C-australica_Contig_10202:2..499- (Chrysoparadoxa australica CS_1217)
GTACAGTTCACGCTCCCCAAGAATTCAAAGATCAAGACCGGCAAGACATG
GCCCAAACCGAAGGATGCCAAAAACCTGCGCAAGTTCAGCATCTACCGCT
GGAATCCGGATGACGGCAAAAACCCGCAGGTTGATACCTATTTCATCGAC
ATGGACACCTGCGGTCCGATGGTTCTAGACGCGCTGATCAAGATCAAGAA
CGAGATCGATCCGACGCTGACCTTCCGCCGGTCTTGCCGCGAAGGGATCT
GTGGTTCCTGCGCGATGAACATCGACGGGATCAACACGTTGGCGTGCATC
TATGGCTTGGACGAGGTCGAGGGCGACGTCAAAATCTATCCGCTGCCGCA
CATGCCGGTGGTCAAGGATCTGATCCCGGACCTGACGCATTTCTATGCTC
AGCACGCCAGCATCATGCCCTGGCTGGAAACCAAGACCAACCGCCCCGCC
AAGGAGTGGAAGCAGTCGATCGAAGACCGTAAAAAGCTGGACGGTCTG back to top
|