mRNA_C-australica_Contig_10202.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10202.1.1
Unique NamemRNA_C-australica_Contig_10202.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
[Close]
BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A0B3S4P9_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=472 Tax=cellular organisms TaxID=131567 RepID=A0A0B3S4P9_9RHOB)

HSP 1 Score: 336 bits (862), Expect = 1.700e-115
Identity = 156/166 (93.98%), Postives = 162/166 (97.59%), Query Frame = 1 
Query:    1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 498
            VQFTLPKNS+IKTGKTWPKP+ AKN+RKF IYRWNPDDGKNPQVDTYF+DMD CGPMVLDALIKIKNE+DPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDE+ GDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL
Sbjct:    2 VQFTLPKNSQIKTGKTWPKPEGAKNVRKFQIYRWNPDDGKNPQVDTYFLDMDACGPMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEISGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 167
[Close]
BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A520P6G8_9RHOB (Succinate dehydrogenase iron-sulfur subunit (Fragment) n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A520P6G8_9RHOB)

HSP 1 Score: 328 bits (840), Expect = 2.800e-113
Identity = 152/166 (91.57%), Postives = 161/166 (96.99%), Query Frame = 1 
Query:    1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 498
            VQ TLPKNS+I+ GKTWPKP  A NLRKFSIYRW+PDDG+NP+VDTYF+DMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYG+DE++GDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL
Sbjct:    2 VQLTLPKNSRIRRGKTWPKPDGATNLRKFSIYRWSPDDGENPRVDTYFVDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGMDEIKGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 167
[Close]
BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A221JWY2_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=17 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A221JWY2_9RHOB)

HSP 1 Score: 327 bits (839), Expect = 5.410e-112
Identity = 150/166 (90.36%), Postives = 161/166 (96.99%), Query Frame = 1 
Query:    1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 498
            VQ TLPKNS+IKTGKTWPKP+ A NLRKF IYRWNPDDGKNPQVDTY+ID+D CGPM+LDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYG+DEV+GDVKIYPLPHMPVVKDLIPDLTHFYAQHAS+MPWLETKTNRPAKEW+QS+EDR+KLDGL
Sbjct:    2 VQLTLPKNSRIKTGKTWPKPEGATNLRKFQIYRWNPDDGKNPQVDTYWIDLDACGPMILDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGMDEVKGDVKIYPLPHMPVVKDLIPDLTHFYAQHASVMPWLETKTNRPAKEWRQSVEDREKLDGL 167
[Close]
BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A0W7WQ30_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=3 Tax=Rhodobacterales TaxID=204455 RepID=A0A0W7WQ30_9RHOB)

HSP 1 Score: 323 bits (828), Expect = 2.650e-110
Identity = 152/167 (91.02%), Postives = 160/167 (95.81%), Query Frame = 1 
Query:    1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEG-DVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 498
            VQFTLPKNSKI+TGKTWPKP+ AK  RKF IYRWNPDDG+NP+VDTYF+DM+TCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDE+   +VKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL
Sbjct:    2 VQFTLPKNSKIRTGKTWPKPEGAKKTRKFQIYRWNPDDGENPRVDTYFVDMETCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEISSAEVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 168
[Close]
BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A2R8BN11_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=2 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A2R8BN11_9RHOB)

HSP 1 Score: 323 bits (827), Expect = 3.630e-110
Identity = 149/166 (89.76%), Postives = 159/166 (95.78%), Query Frame = 1 
Query:    1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 498
            VQFTLPKNSK++ GKTWPKP+ A N+RKF IYRW+PD G+NP+VDTYF+DMD CGPM+LDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEV+GDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRP KEWKQSIEDRKKLDGL
Sbjct:    2 VQFTLPKNSKMRVGKTWPKPEGATNVRKFQIYRWDPDTGENPRVDTYFVDMDNCGPMILDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVKGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPRKEWKQSIEDRKKLDGL 167
[Close]
BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A5C5GC27_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=2 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A5C5GC27_9RHOB)

HSP 1 Score: 322 bits (826), Expect = 5.160e-110
Identity = 149/166 (89.76%), Postives = 157/166 (94.58%), Query Frame = 1 
Query:    1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 498
            VQ TLPKNS+I  GKTWPKP  A NLRK  +YRWNPDDGKNP++DTY+IDMD CGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDE++GD+KIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL
Sbjct:    2 VQLTLPKNSRITVGKTWPKPSGATNLRKVDVYRWNPDDGKNPRLDTYWIDMDNCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEIDGDIKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 167
[Close]
BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A0D1DCB9_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=3 Tax=Rhodobacterales TaxID=204455 RepID=A0A0D1DCB9_9RHOB)

HSP 1 Score: 321 bits (823), Expect = 1.480e-109
Identity = 148/166 (89.16%), Postives = 157/166 (94.58%), Query Frame = 1 
Query:    1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 498
            VQFTLPKNSKI TGKTWPKP+ A  L+ F IYRWNP+DGKNP+VDTYF+D+DTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDG NTLAC YG+DEV+GDVKIYPLPHMPVVKDLIPDLTHFYAQHAS+MPWLETKTN PAKEWKQSIEDRKKLDGL
Sbjct:    2 VQFTLPKNSKITTGKTWPKPEGANRLKTFKIYRWNPEDGKNPRVDTYFVDLDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGANTLACTYGIDEVDGDVKIYPLPHMPVVKDLIPDLTHFYAQHASVMPWLETKTNTPAKEWKQSIEDRKKLDGL 167
[Close]
BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A2T4J4H5_FUSBL (Succinate dehydrogenase iron-sulfur subunit n=2 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A2T4J4H5_FUSBL)

HSP 1 Score: 321 bits (823), Expect = 1.480e-109
Identity = 149/166 (89.76%), Postives = 158/166 (95.18%), Query Frame = 1 
Query:    1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 498
            VQ TLPKNSKI+TGKTWPKP  AKNLR F IYRW+PDDG+NP++DTYF+DMD+CGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDE++GDVKIYPLPHM VVKDLIPDLTHFYAQHASIMPWLETKTNRP KEWKQSI DRKKLDGL
Sbjct:    2 VQLTLPKNSKIRTGKTWPKPAGAKNLRTFRIYRWSPDDGENPRIDTYFVDMDSCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEIKGDVKIYPLPHMEVVKDLIPDLTHFYAQHASIMPWLETKTNRPGKEWKQSIADRKKLDGL 167
[Close]
BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: K2HDN7_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=1 Tax=Oceaniovalibus guishaninsula JLT2003 TaxID=1231392 RepID=K2HDN7_9RHOB)

HSP 1 Score: 320 bits (819), Expect = 6.000e-109
Identity = 147/166 (88.55%), Postives = 158/166 (95.18%), Query Frame = 1 
Query:    1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 498
            VQ TLPKNSKI+TGKTWPKP+ A NLRK  IYRWNPDDG+NP+VDTYFIDMD+CGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEV+GD++IYPLPHMPVVKDLIPDLTHFYAQHAS+MPWLET TN P KEW+QSI+DRKKLDGL
Sbjct:    2 VQLTLPKNSKIRTGKTWPKPEGATNLRKLDIYRWNPDDGENPRVDTYFIDMDSCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVKGDIRIYPLPHMPVVKDLIPDLTHFYAQHASVMPWLETTTNEPRKEWRQSIDDRKKLDGL 167
[Close]
BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Match: A0A1X6YS36_9RHOB (Succinate dehydrogenase iron-sulfur subunit n=1 Tax=Roseovarius albus TaxID=1247867 RepID=A0A1X6YS36_9RHOB)

HSP 1 Score: 320 bits (819), Expect = 6.210e-109
Identity = 149/167 (89.22%), Postives = 160/167 (95.81%), Query Frame = 1 
Query:    1 VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFIDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEVEGD-VKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDRKKLDGL 498
            VQF LPKNS++ +GKTWPKP+ A N+RKF IYRWNPDDG+NP+VDTYF+DMDTCGPM+LDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYG+DEV GD VKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDR+KLDGL
Sbjct:    2 VQFKLPKNSRMVSGKTWPKPEGASNVRKFQIYRWNPDDGQNPRVDTYFVDMDTCGPMILDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGMDEVRGDTVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPAKEWKQSIEDREKLDGL 168
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10202.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B3S4P9_9RHOB1.700e-11593.98Succinate dehydrogenase iron-sulfur subunit n=472 ... [more]
A0A520P6G8_9RHOB2.800e-11391.57Succinate dehydrogenase iron-sulfur subunit (Fragm... [more]
A0A221JWY2_9RHOB5.410e-11290.36Succinate dehydrogenase iron-sulfur subunit n=17 T... [more]
A0A0W7WQ30_9RHOB2.650e-11091.02Succinate dehydrogenase iron-sulfur subunit n=3 Ta... [more]
A0A2R8BN11_9RHOB3.630e-11089.76Succinate dehydrogenase iron-sulfur subunit n=2 Ta... [more]
A0A5C5GC27_9RHOB5.160e-11089.76Succinate dehydrogenase iron-sulfur subunit n=2 Ta... [more]
A0A0D1DCB9_9RHOB1.480e-10989.16Succinate dehydrogenase iron-sulfur subunit n=3 Ta... [more]
A0A2T4J4H5_FUSBL1.480e-10989.76Succinate dehydrogenase iron-sulfur subunit n=2 Ta... [more]
K2HDN7_9RHOB6.000e-10988.55Succinate dehydrogenase iron-sulfur subunit n=1 Ta... [more]
A0A1X6YS36_9RHOB6.210e-10989.22Succinate dehydrogenase iron-sulfur subunit n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10202contigC-australica_Contig_10202:2..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1423144.Gal_03123
Preferred namesdhB
PFAMsFer2_3,Fer4_10,Fer4_17,Fer4_8
Model size498
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00045
KEGG koko:K00240
KEGG ReactionR02164
KEGG Pathwayko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011,M00149,M00173,M00374,M00376
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.32e-114
EggNOG OGsCOG0479@1|root,COG0479@2|Bacteria,1MVHS@1224|Proteobacteria,2TQYF@28211|Alphaproteobacteria,34FA6@302485|Phaeobacter
EC1.3.5.1,1.3.5.4
Description2Fe-2S iron-sulfur cluster binding domain
Cds size498
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586758.5554593-CDS-C-australica_Contig_10202:1..4991682586758.5554593-CDS-C-australica_Contig_10202:1..499Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10202 2..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10202.1.1prot_C-australica_Contig_10202.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10202 2..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10202.1.1

>prot_C-australica_Contig_10202.1.1 ID=prot_C-australica_Contig_10202.1.1|Name=mRNA_C-australica_Contig_10202.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=166bp
VQFTLPKNSKIKTGKTWPKPKDAKNLRKFSIYRWNPDDGKNPQVDTYFID
MDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACI
YGLDEVEGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLETKTNRPA
KEWKQSIEDRKKLDGL
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mRNA from alignment at C-australica_Contig_10202:2..499-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10202.1.1 ID=mRNA_C-australica_Contig_10202.1.1|Name=mRNA_C-australica_Contig_10202.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=498bp|location=Sequence derived from alignment at C-australica_Contig_10202:2..499- (Chrysoparadoxa australica CS_1217)
GTACAGTTCACGCTCCCCAAGAATTCAAAGATCAAGACCGGCAAGACATG
GCCCAAACCGAAGGATGCCAAAAACCTGCGCAAGTTCAGCATCTACCGCT
GGAATCCGGATGACGGCAAAAACCCGCAGGTTGATACCTATTTCATCGAC
ATGGACACCTGCGGTCCGATGGTTCTAGACGCGCTGATCAAGATCAAGAA
CGAGATCGATCCGACGCTGACCTTCCGCCGGTCTTGCCGCGAAGGGATCT
GTGGTTCCTGCGCGATGAACATCGACGGGATCAACACGTTGGCGTGCATC
TATGGCTTGGACGAGGTCGAGGGCGACGTCAAAATCTATCCGCTGCCGCA
CATGCCGGTGGTCAAGGATCTGATCCCGGACCTGACGCATTTCTATGCTC
AGCACGCCAGCATCATGCCCTGGCTGGAAACCAAGACCAACCGCCCCGCC
AAGGAGTGGAAGCAGTCGATCGAAGACCGTAAAAAGCTGGACGGTCTG
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Coding sequence (CDS) from alignment at C-australica_Contig_10202:2..499-

>mRNA_C-australica_Contig_10202.1.1 ID=mRNA_C-australica_Contig_10202.1.1|Name=mRNA_C-australica_Contig_10202.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=498bp|location=Sequence derived from alignment at C-australica_Contig_10202:2..499- (Chrysoparadoxa australica CS_1217)
GTACAGTTCACGCTCCCCAAGAATTCAAAGATCAAGACCGGCAAGACATG
GCCCAAACCGAAGGATGCCAAAAACCTGCGCAAGTTCAGCATCTACCGCT
GGAATCCGGATGACGGCAAAAACCCGCAGGTTGATACCTATTTCATCGAC
ATGGACACCTGCGGTCCGATGGTTCTAGACGCGCTGATCAAGATCAAGAA
CGAGATCGATCCGACGCTGACCTTCCGCCGGTCTTGCCGCGAAGGGATCT
GTGGTTCCTGCGCGATGAACATCGACGGGATCAACACGTTGGCGTGCATC
TATGGCTTGGACGAGGTCGAGGGCGACGTCAAAATCTATCCGCTGCCGCA
CATGCCGGTGGTCAAGGATCTGATCCCGGACCTGACGCATTTCTATGCTC
AGCACGCCAGCATCATGCCCTGGCTGGAAACCAAGACCAACCGCCCCGCC
AAGGAGTGGAAGCAGTCGATCGAAGACCGTAAAAAGCTGGACGGTCTG
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