Homology
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match:
A0A835YLU7_9STRA (DNL-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLU7_9STRA)
HSP 1 Score: 89.7 bits (221), Expect = 6.320e-20
Identity = 39/66 (59.09%), Postives = 55/66 (83.33%), Query Frame = 2
Query: 311 LSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMGLMDFDDF-RHIEEFMAERGD 505
++L+FTC+ CD R+ YK+SRVAY +G+VIC CSGC+ RHLIADN GL+DF +F R+IE++M +G+
Sbjct: 1 MTLAFTCKKCDTRNIYKISRVAYYQGIVICTCSGCQSRHLIADNKGLLDFPEFGRNIEDYMESQGE 66
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match:
A0A6H5JHA9_9PHAE (DNL-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA9_9PHAE)
HSP 1 Score: 86.3 bits (212), Expect = 6.420e-17
Identity = 43/90 (47.78%), Postives = 66/90 (73.33%), Query Frame = 2
Query: 263 DPGASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMGLMDFDDF-RHIEEFMAERGDEGDIVKRV 529
D GA V G + LN K++LSFTC VCD ++++++RV++ +G+V+ C C ++HLIADN+G +DF +F R++EEFMA++G VKRV
Sbjct: 84 DDGAEV--GHVMLNRKITLSFTCNVCDGHNTHQINRVSFMQGIVVLWCQHCNQKHLIADNLGKLDFPEFGRNLEEFMAKKGTP---VKRV 168
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match:
A0A8D2E2Q0_SCIVU (DNL-type zinc finger n=2 Tax=Sciurini TaxID=337752 RepID=A0A8D2E2Q0_SCIVU)
HSP 1 Score: 82.4 bits (202), Expect = 2.550e-16
Identity = 45/106 (42.45%), Postives = 69/106 (65.09%), Query Frame = 2
Query: 254 STADPGASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVSSLTPEGIVLEAV 568
S++ G +V+LG ++ L +TCRVC RSS ++S++AY +G+VI C GC+ H+IADN+G D D R+IEE +A RG++ V+RV+ ++LEAV
Sbjct: 49 SSSGSGPAVALGHVETT-HYQLVYTCRVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLDGKRNIEEILASRGEK---VRRVAGQGALELILEAV 150
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match:
A0A1U7QQ44_MESAU (DNL-type zinc finger protein isoform X1 n=4 Tax=Cricetidae TaxID=337677 RepID=A0A1U7QQ44_MESAU)
HSP 1 Score: 82.4 bits (202), Expect = 3.000e-16
Identity = 46/104 (44.23%), Postives = 69/104 (66.35%), Query Frame = 2
Query: 266 PGASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVSSLTPEGIVLEAVEP 574
PGA+ LG+++ + + L +TC+VC RSS ++S++AY +G+VI C GC+ H+IADN+G D R+IEE +A RG+E V+RVS ++LEA EP
Sbjct: 57 PGAA--LGRVEAD-RYQLVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLKGKRNIEEILAARGEE---VRRVSGEGALELILEAAEP 154
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match:
A0A250YAZ2_CASCN (DNL-type zinc finger n=1 Tax=Castor canadensis TaxID=51338 RepID=A0A250YAZ2_CASCN)
HSP 1 Score: 80.9 bits (198), Expect = 1.180e-15
Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 2
Query: 254 STADPGASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVS 532
ST+ PG + +LG+++ L +TC+VC RSS ++S++AY +G+VI C GC+ H+IADN+G D D R+IEE +A RG+E V+RV+
Sbjct: 47 STSGPGPAAALGRVEA-AHYQLVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLDGKRNIEEILAARGEE---VRRVA 136
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match:
A0A2K5RX38_CEBIM (DNL-type zinc finger n=2 Tax=Cebus imitator TaxID=2715852 RepID=A0A2K5RX38_CEBIM)
HSP 1 Score: 79.7 bits (195), Expect = 3.400e-15
Identity = 43/105 (40.95%), Postives = 69/105 (65.71%), Query Frame = 2
Query: 254 STADPGASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVSSLTPEGIVLEA 565
S+++PG +LG++++ L +TC+VC RSS ++S++AY +G+VI C GC+ H+IADN+G D + R+IEE +A RG++ V RV+ +VLEA
Sbjct: 49 SSSEPGPEAALGRVEV-AHYQLVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLNGKRNIEEILAARGEQ---VHRVAGEGALELVLEA 149
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match:
UPI00033150A5 (DNL-type zinc finger protein n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI00033150A5)
HSP 1 Score: 79.3 bits (194), Expect = 3.900e-15
Identity = 43/109 (39.45%), Postives = 67/109 (61.47%), Query Frame = 2
Query: 251 WSTADPGASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVSSLTPEGIVLEAVEP 574
W + S LG+++ L +TC+VC RSS ++S++AY++G+V+ C GC+ H+IADN+G D D R+IEE +A RG+E V+RV++ +VLE P
Sbjct: 39 WGWSPRRTSSDLGRVEA-AHYQLVYTCKVCGTRSSNRISKLAYQQGVVLVTCPGCQNHHIIADNLGWFSDLDGKRNIEEILAARGEE---VRRVTNEGAVELVLETAGP 143
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match:
UPI000B4F5195 (DNL-type zinc finger protein isoform X1 n=1 Tax=Meriones unguiculatus TaxID=10047 RepID=UPI000B4F5195)
HSP 1 Score: 79.3 bits (194), Expect = 4.460e-15
Identity = 46/110 (41.82%), Postives = 70/110 (63.64%), Query Frame = 2
Query: 254 STADPGAS--VSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVSSLTPEGIVLEAVEP 574
S++ PG+ +LG++ ++ L +TC+VC RSS ++S++AY +G+VI C GC+ H+IADN+G D R+IEE +A RG+E V RVS ++LEA EP
Sbjct: 49 SSSMPGSGHVTALGRVQVD-HYQLIYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLKGKRNIEEILAARGEE---VHRVSGDDALELILEAAEP 154
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match:
A0A6I9JM28_CHRAS (DNL-type zinc finger protein n=1 Tax=Chrysochloris asiatica TaxID=185453 RepID=A0A6I9JM28_CHRAS)
HSP 1 Score: 79.0 bits (193), Expect = 6.960e-15
Identity = 42/100 (42.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query: 269 GASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVSSLTPEGIVLEA 565
G +LG+++ + L +TC+VC RSS ++S++AY +G+VI C GCR H+IADN+G D D R++EE +A RG++ V+RV+ +VLEA
Sbjct: 56 GPGTALGRVE-SKHYQLVYTCKVCGTRSSKRISKLAYHQGVVIVTCQGCRNHHIIADNLGWFSDLDGKRNVEEILAARGEQ---VRRVAGDGALEVVLEA 151
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match:
UPI001C5344F4 (DNL-type zinc finger protein n=1 Tax=Dipodomys spectabilis TaxID=105255 RepID=UPI001C5344F4)
HSP 1 Score: 78.6 bits (192), Expect = 8.930e-15
Identity = 43/107 (40.19%), Postives = 69/107 (64.49%), Query Frame = 2
Query: 257 TADPGASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVSSLTPEGIVLEAVEP 574
T+ PG + +LG+++ L +TC+VC+ RSS ++S++AY G+VI C GC+ H+IADN+G D D R+IEE +A +G++ V+RV+ EG + +EP
Sbjct: 48 TSGPGPAAALGRVEA-AHYQLVYTCKVCETRSSKRISKLAYHRGVVIVTCPGCQNHHIIADNLGWFSDLDGKRNIEEILAAKGEK---VRRVAG---EGALELTLEP 147
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 6.32e-20 / Id = 59.09 Expect = 6.42e-17 / Id = 47.78 Expect = 2.55e-16 / Id = 42.45 Expect = 3.00e-16 / Id = 44.23 Expect = 1.18e-15 / Id = 44.68 Expect = 3.40e-15 / Id = 40.95 Expect = 3.90e-15 / Id = 39.45 Expect = 4.46e-15 / Id = 41.82 Expect = 6.96e-15 / Id = 42.00 Expect = 8.93e-15 / Id = 40.19 Sequence A0A835YLU7_9STRA A0A6H5JHA9_9PHAE A0A8D2E2Q0_SCIVU A0A1U7QQ44_MESAU A0A250YAZ2_CASCN A0A2K5RX38_CEBIM UPI00033150A5 UPI000B4F5195 A0A6I9JM28_CHRAS UPI001C5344F4 Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Seed ortholog 10036.XP_005083712.1 Preferred name DNLZ PFAMs zf-DNL Model size 613 Max annot lvl 33208|Metazoa KEGG ko ko:K17808 Hectar predicted targeting category chloroplast GOs GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0006457,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0030150,GO:0031647,GO:0031974,GO:0031981,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045184,GO:0046907,GO:0050821,GO:0051087,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0065007,GO:0065008,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:1990542 Exons 4 Evalue 1.15e-17 EggNOG OGs KOG3277@1|root,KOG3277@2759|Eukaryota,3A8PK@33154|Opisthokonta,3BSQ4@33208|Metazoa,3D9DP@33213|Bilateria,48E7J@7711|Chordata,49B1F@7742|Vertebrata,3JGH5@40674|Mammalia,35Q2T@314146|Euarchontoglires,4Q5MF@9989|Rodentia Ec32 ortholog description expressed unknown protein Ec32 ortholog Ec-27_001360.1 Description DNL-type zinc finger Cds size 525 COG category S BRITE ko00000,ko03029
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682586757.960899-UTR-C-australica_Contig_1020:1244..1271 1682586757.960899-UTR-C-australica_Contig_1020:1244..1271 Chrysoparadoxa australica CS_1217 UTR C-australica_Contig_1020 1245..1271 - 1682586758.0218532-UTR-C-australica_Contig_1020:2140..2201 1682586758.0218532-UTR-C-australica_Contig_1020:2140..2201 Chrysoparadoxa australica CS_1217 UTR C-australica_Contig_1020 2141..2201 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682586757.9741259-CDS-C-australica_Contig_1020:1271..1303 1682586757.9741259-CDS-C-australica_Contig_1020:1271..1303 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_1020 1272..1303 - 1682586757.986016-CDS-C-australica_Contig_1020:1374..1491 1682586757.986016-CDS-C-australica_Contig_1020:1374..1491 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_1020 1375..1491 - 1682586757.9973962-CDS-C-australica_Contig_1020:1688..1944 1682586757.9973962-CDS-C-australica_Contig_1020:1688..1944 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_1020 1689..1944 - 1682586758.009291-CDS-C-australica_Contig_1020:2020..2140 1682586758.009291-CDS-C-australica_Contig_1020:2020..2140 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_1020 2021..2140 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1020.2.1
>prot_C-australica_Contig_1020.2.1 ID=prot_C-australica_Contig_1020.2.1|Name=mRNA_C-australica_Contig_1020.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=175bp
MLPFFLIYLLALSEMAVAFHINPLVLTAGMRFAAVHRAKEGEGEEPTPLL back to top mRNA from alignment at C-australica_Contig_1020:1245..2201-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1020.2.1 ID=mRNA_C-australica_Contig_1020.2.1|Name=mRNA_C-australica_Contig_1020.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=957bp|location=Sequence derived from alignment at C-australica_Contig_1020:1245..2201- (Chrysoparadoxa australica CS_1217)ATCGAGATCTTTGATACTGCGATATTCCTCCAGCAGTCCTTGCGTTGCTG
CCGTTGCTCCG ATGCTTCCATTTTTCCTCATCTATCTCCTAGCACTATCT
GAGATGGCCGTGGCTTTCCATATCAACCCCCTGGTTCTCACTGCTGGGAT
GAGATTTGCTGCAGTTCATCGAGCGAAAGAG GTGAGCTTGCCTTGGAGGG
TGCAACAAGCACAATGTCCCTAACCTTGACAGCTTGTATTTCTCACCCCC
TACATAGGGAGAAGGCGAGGAGCCCACCCCTCTCCTCCCGCCGCAAGACT
CTGCCTCTTCCGTGGGAGGAGATTCCTGGAGCACAGCAGATCCTGGTGCA
TCGGTTTCACTTGGCCAGATTGACCTCAACCCAAAGCTGTCACTATCCTT
CACGTGCCGAGTGTGCGATGCAAGGTCCAGCTATAAAGTATCTCGTGTGG
CATATAAGGAAGGACTGGTCATTTGCGTTTGCTCAGGATGCCGGAGAAGA
CACTTAATCGCTG GTGGGTTACCCATCACTGTAACTCGCTCCCCTTCTCA
CCAAAGTTATAGGGGGCTTGCCTGAGCCCATAGATCCCAGCTGCGCATGA
GTCGATTGCCCGGGCAGACTCGGACTTTTGTACCTCTTGCTAATGAAATG
CAGCCGCTTCGAAAAATGCATGAGATACATGCTCACGTCTACTCTTGCTC
CTCCCTGCAGATAACATGGGGTTGATGGACTTCGATGACTTCAGGCACAT
TGAAGAGTTCATGGCAGAGAGGGGAGACGAAGGGGACATTGTGAAAAGAG
TCAGCTCCCTTACCCCAGAGGGTATAG GTGAGTTCGGGGTAGAACATTGC
AACACAGAGCAAGCAGGAAGAAAATTGACCCTGTTCCTTCCATCCCAGTT
CTTGAGGCAGTGGAACCTGATGATGTGTAA ATAGAAGAGGATAGGGGCAA
GGTGGGG back to top Coding sequence (CDS) from alignment at C-australica_Contig_1020:1245..2201-
>mRNA_C-australica_Contig_1020.2.1 ID=mRNA_C-australica_Contig_1020.2.1|Name=mRNA_C-australica_Contig_1020.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=525bp|location=Sequence derived from alignment at C-australica_Contig_1020:1245..2201- (Chrysoparadoxa australica CS_1217) back to top