mRNA_C-australica_Contig_1020.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1020.2.1
Unique NamemRNA_C-australica_Contig_1020.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
[Close]
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match: A0A835YLU7_9STRA (DNL-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLU7_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 6.320e-20
Identity = 39/66 (59.09%), Postives = 55/66 (83.33%), Query Frame = 2 
Query:  311 LSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMGLMDFDDF-RHIEEFMAERGD 505
            ++L+FTC+ CD R+ YK+SRVAY +G+VIC CSGC+ RHLIADN GL+DF +F R+IE++M  +G+
Sbjct:    1 MTLAFTCKKCDTRNIYKISRVAYYQGIVICTCSGCQSRHLIADNKGLLDFPEFGRNIEDYMESQGE 66
[Close]
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match: A0A6H5JHA9_9PHAE (DNL-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA9_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 6.420e-17
Identity = 43/90 (47.78%), Postives = 66/90 (73.33%), Query Frame = 2 
Query:  263 DPGASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMGLMDFDDF-RHIEEFMAERGDEGDIVKRV 529
            D GA V  G + LN K++LSFTC VCD  ++++++RV++ +G+V+  C  C ++HLIADN+G +DF +F R++EEFMA++G     VKRV
Sbjct:   84 DDGAEV--GHVMLNRKITLSFTCNVCDGHNTHQINRVSFMQGIVVLWCQHCNQKHLIADNLGKLDFPEFGRNLEEFMAKKGTP---VKRV 168
[Close]
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match: A0A8D2E2Q0_SCIVU (DNL-type zinc finger n=2 Tax=Sciurini TaxID=337752 RepID=A0A8D2E2Q0_SCIVU)

HSP 1 Score: 82.4 bits (202), Expect = 2.550e-16
Identity = 45/106 (42.45%), Postives = 69/106 (65.09%), Query Frame = 2 
Query:  254 STADPGASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVSSLTPEGIVLEAV 568
            S++  G +V+LG ++      L +TCRVC  RSS ++S++AY +G+VI  C GC+  H+IADN+G   D D  R+IEE +A RG++   V+RV+      ++LEAV
Sbjct:   49 SSSGSGPAVALGHVETT-HYQLVYTCRVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLDGKRNIEEILASRGEK---VRRVAGQGALELILEAV 150
[Close]
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match: A0A1U7QQ44_MESAU (DNL-type zinc finger protein isoform X1 n=4 Tax=Cricetidae TaxID=337677 RepID=A0A1U7QQ44_MESAU)

HSP 1 Score: 82.4 bits (202), Expect = 3.000e-16
Identity = 46/104 (44.23%), Postives = 69/104 (66.35%), Query Frame = 2 
Query:  266 PGASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVSSLTPEGIVLEAVEP 574
            PGA+  LG+++ + +  L +TC+VC  RSS ++S++AY +G+VI  C GC+  H+IADN+G   D    R+IEE +A RG+E   V+RVS      ++LEA EP
Sbjct:   57 PGAA--LGRVEAD-RYQLVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLKGKRNIEEILAARGEE---VRRVSGEGALELILEAAEP 154
[Close]
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match: A0A250YAZ2_CASCN (DNL-type zinc finger n=1 Tax=Castor canadensis TaxID=51338 RepID=A0A250YAZ2_CASCN)

HSP 1 Score: 80.9 bits (198), Expect = 1.180e-15
Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 2 
Query:  254 STADPGASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVS 532
            ST+ PG + +LG+++      L +TC+VC  RSS ++S++AY +G+VI  C GC+  H+IADN+G   D D  R+IEE +A RG+E   V+RV+
Sbjct:   47 STSGPGPAAALGRVEA-AHYQLVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLDGKRNIEEILAARGEE---VRRVA 136
[Close]
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match: A0A2K5RX38_CEBIM (DNL-type zinc finger n=2 Tax=Cebus imitator TaxID=2715852 RepID=A0A2K5RX38_CEBIM)

HSP 1 Score: 79.7 bits (195), Expect = 3.400e-15
Identity = 43/105 (40.95%), Postives = 69/105 (65.71%), Query Frame = 2 
Query:  254 STADPGASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVSSLTPEGIVLEA 565
            S+++PG   +LG++++     L +TC+VC  RSS ++S++AY +G+VI  C GC+  H+IADN+G   D +  R+IEE +A RG++   V RV+      +VLEA
Sbjct:   49 SSSEPGPEAALGRVEV-AHYQLVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLNGKRNIEEILAARGEQ---VHRVAGEGALELVLEA 149
[Close]
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match: UPI00033150A5 (DNL-type zinc finger protein n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI00033150A5)

HSP 1 Score: 79.3 bits (194), Expect = 3.900e-15
Identity = 43/109 (39.45%), Postives = 67/109 (61.47%), Query Frame = 2 
Query:  251 WSTADPGASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVSSLTPEGIVLEAVEP 574
            W  +    S  LG+++      L +TC+VC  RSS ++S++AY++G+V+  C GC+  H+IADN+G   D D  R+IEE +A RG+E   V+RV++     +VLE   P
Sbjct:   39 WGWSPRRTSSDLGRVEA-AHYQLVYTCKVCGTRSSNRISKLAYQQGVVLVTCPGCQNHHIIADNLGWFSDLDGKRNIEEILAARGEE---VRRVTNEGAVELVLETAGP 143
[Close]
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match: UPI000B4F5195 (DNL-type zinc finger protein isoform X1 n=1 Tax=Meriones unguiculatus TaxID=10047 RepID=UPI000B4F5195)

HSP 1 Score: 79.3 bits (194), Expect = 4.460e-15
Identity = 46/110 (41.82%), Postives = 70/110 (63.64%), Query Frame = 2 
Query:  254 STADPGAS--VSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVSSLTPEGIVLEAVEP 574
            S++ PG+    +LG++ ++    L +TC+VC  RSS ++S++AY +G+VI  C GC+  H+IADN+G   D    R+IEE +A RG+E   V RVS      ++LEA EP
Sbjct:   49 SSSMPGSGHVTALGRVQVD-HYQLIYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLKGKRNIEEILAARGEE---VHRVSGDDALELILEAAEP 154
[Close]
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match: A0A6I9JM28_CHRAS (DNL-type zinc finger protein n=1 Tax=Chrysochloris asiatica TaxID=185453 RepID=A0A6I9JM28_CHRAS)

HSP 1 Score: 79.0 bits (193), Expect = 6.960e-15
Identity = 42/100 (42.00%), Postives = 65/100 (65.00%), Query Frame = 2 
Query:  269 GASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVSSLTPEGIVLEA 565
            G   +LG+++ +    L +TC+VC  RSS ++S++AY +G+VI  C GCR  H+IADN+G   D D  R++EE +A RG++   V+RV+      +VLEA
Sbjct:   56 GPGTALGRVE-SKHYQLVYTCKVCGTRSSKRISKLAYHQGVVIVTCQGCRNHHIIADNLGWFSDLDGKRNVEEILAARGEQ---VRRVAGDGALEVVLEA 151
[Close]
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match: UPI001C5344F4 (DNL-type zinc finger protein n=1 Tax=Dipodomys spectabilis TaxID=105255 RepID=UPI001C5344F4)

HSP 1 Score: 78.6 bits (192), Expect = 8.930e-15
Identity = 43/107 (40.19%), Postives = 69/107 (64.49%), Query Frame = 2 
Query:  257 TADPGASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVSSLTPEGIVLEAVEP 574
            T+ PG + +LG+++      L +TC+VC+ RSS ++S++AY  G+VI  C GC+  H+IADN+G   D D  R+IEE +A +G++   V+RV+    EG +   +EP
Sbjct:   48 TSGPGPAAALGRVEA-AHYQLVYTCKVCETRSSKRISKLAYHRGVVIVTCPGCQNHHIIADNLGWFSDLDGKRNIEEILAAKGEK---VRRVAG---EGALELTLEP 147
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YLU7_9STRA6.320e-2059.09DNL-type domain-containing protein n=1 Tax=Tribone... [more]
A0A6H5JHA9_9PHAE6.420e-1747.78DNL-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A8D2E2Q0_SCIVU2.550e-1642.45DNL-type zinc finger n=2 Tax=Sciurini TaxID=337752... [more]
A0A1U7QQ44_MESAU3.000e-1644.23DNL-type zinc finger protein isoform X1 n=4 Tax=Cr... [more]
A0A250YAZ2_CASCN1.180e-1544.68DNL-type zinc finger n=1 Tax=Castor canadensis Tax... [more]
A0A2K5RX38_CEBIM3.400e-1540.95DNL-type zinc finger n=2 Tax=Cebus imitator TaxID=... [more]
UPI00033150A53.900e-1539.45DNL-type zinc finger protein n=1 Tax=Sorex araneus... [more]
UPI000B4F51954.460e-1541.82DNL-type zinc finger protein isoform X1 n=1 Tax=Me... [more]
A0A6I9JM28_CHRAS6.960e-1542.00DNL-type zinc finger protein n=1 Tax=Chrysochloris... [more]
UPI001C5344F48.930e-1540.19DNL-type zinc finger protein n=1 Tax=Dipodomys spe... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1020contigC-australica_Contig_1020:1245..2201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog10036.XP_005083712.1
Preferred nameDNLZ
PFAMszf-DNL
Model size613
Max annot lvl33208|Metazoa
KEGG koko:K17808
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0006457,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0030150,GO:0031647,GO:0031974,GO:0031981,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045184,GO:0046907,GO:0050821,GO:0051087,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0065007,GO:0065008,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:1990542
Exons4
Evalue1.15e-17
EggNOG OGsKOG3277@1|root,KOG3277@2759|Eukaryota,3A8PK@33154|Opisthokonta,3BSQ4@33208|Metazoa,3D9DP@33213|Bilateria,48E7J@7711|Chordata,49B1F@7742|Vertebrata,3JGH5@40674|Mammalia,35Q2T@314146|Euarchontoglires,4Q5MF@9989|Rodentia
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_001360.1
DescriptionDNL-type zinc finger
Cds size525
COG categoryS
BRITEko00000,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1020.2.1prot_C-australica_Contig_1020.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1020 1272..2140 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586757.960899-UTR-C-australica_Contig_1020:1244..12711682586757.960899-UTR-C-australica_Contig_1020:1244..1271Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1020 1245..1271 -
1682586758.0218532-UTR-C-australica_Contig_1020:2140..22011682586758.0218532-UTR-C-australica_Contig_1020:2140..2201Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1020 2141..2201 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586757.9741259-CDS-C-australica_Contig_1020:1271..13031682586757.9741259-CDS-C-australica_Contig_1020:1271..1303Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1020 1272..1303 -
1682586757.986016-CDS-C-australica_Contig_1020:1374..14911682586757.986016-CDS-C-australica_Contig_1020:1374..1491Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1020 1375..1491 -
1682586757.9973962-CDS-C-australica_Contig_1020:1688..19441682586757.9973962-CDS-C-australica_Contig_1020:1688..1944Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1020 1689..1944 -
1682586758.009291-CDS-C-australica_Contig_1020:2020..21401682586758.009291-CDS-C-australica_Contig_1020:2020..2140Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1020 2021..2140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1020.2.1

>prot_C-australica_Contig_1020.2.1 ID=prot_C-australica_Contig_1020.2.1|Name=mRNA_C-australica_Contig_1020.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=175bp
MLPFFLIYLLALSEMAVAFHINPLVLTAGMRFAAVHRAKEGEGEEPTPLL
PPQDSASSVGGDSWSTADPGASVSLGQIDLNPKLSLSFTCRVCDARSSYK
VSRVAYKEGLVICVCSGCRRRHLIADNMGLMDFDDFRHIEEFMAERGDEG
DIVKRVSSLTPEGIVLEAVEPDDV*
back to top

mRNA from alignment at C-australica_Contig_1020:1245..2201-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1020.2.1 ID=mRNA_C-australica_Contig_1020.2.1|Name=mRNA_C-australica_Contig_1020.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=957bp|location=Sequence derived from alignment at C-australica_Contig_1020:1245..2201- (Chrysoparadoxa australica CS_1217)
ATCGAGATCTTTGATACTGCGATATTCCTCCAGCAGTCCTTGCGTTGCTG
CCGTTGCTCCGATGCTTCCATTTTTCCTCATCTATCTCCTAGCACTATCT
GAGATGGCCGTGGCTTTCCATATCAACCCCCTGGTTCTCACTGCTGGGAT
GAGATTTGCTGCAGTTCATCGAGCGAAAGAGGTGAGCTTGCCTTGGAGGG
TGCAACAAGCACAATGTCCCTAACCTTGACAGCTTGTATTTCTCACCCCC
TACATAGGGAGAAGGCGAGGAGCCCACCCCTCTCCTCCCGCCGCAAGACT
CTGCCTCTTCCGTGGGAGGAGATTCCTGGAGCACAGCAGATCCTGGTGCA
TCGGTTTCACTTGGCCAGATTGACCTCAACCCAAAGCTGTCACTATCCTT
CACGTGCCGAGTGTGCGATGCAAGGTCCAGCTATAAAGTATCTCGTGTGG
CATATAAGGAAGGACTGGTCATTTGCGTTTGCTCAGGATGCCGGAGAAGA
CACTTAATCGCTGGTGGGTTACCCATCACTGTAACTCGCTCCCCTTCTCA
CCAAAGTTATAGGGGGCTTGCCTGAGCCCATAGATCCCAGCTGCGCATGA
GTCGATTGCCCGGGCAGACTCGGACTTTTGTACCTCTTGCTAATGAAATG
CAGCCGCTTCGAAAAATGCATGAGATACATGCTCACGTCTACTCTTGCTC
CTCCCTGCAGATAACATGGGGTTGATGGACTTCGATGACTTCAGGCACAT
TGAAGAGTTCATGGCAGAGAGGGGAGACGAAGGGGACATTGTGAAAAGAG
TCAGCTCCCTTACCCCAGAGGGTATAGGTGAGTTCGGGGTAGAACATTGC
AACACAGAGCAAGCAGGAAGAAAATTGACCCTGTTCCTTCCATCCCAGTT
CTTGAGGCAGTGGAACCTGATGATGTGTAAATAGAAGAGGATAGGGGCAA
GGTGGGG
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_1020:1245..2201-

>mRNA_C-australica_Contig_1020.2.1 ID=mRNA_C-australica_Contig_1020.2.1|Name=mRNA_C-australica_Contig_1020.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=525bp|location=Sequence derived from alignment at C-australica_Contig_1020:1245..2201- (Chrysoparadoxa australica CS_1217)
ATGCTTCCATTTTTCCTCATCTATCTCCTAGCACTATCTGAGATGGCCGT
GGCTTTCCATATCAACCCCCTGGTTCTCACTGCTGGGATGAGATTTGCTG
CAGTTCATCGAGCGAAAGAGGGAGAAGGCGAGGAGCCCACCCCTCTCCTC
CCGCCGCAAGACTCTGCCTCTTCCGTGGGAGGAGATTCCTGGAGCACAGC
AGATCCTGGTGCATCGGTTTCACTTGGCCAGATTGACCTCAACCCAAAGC
TGTCACTATCCTTCACGTGCCGAGTGTGCGATGCAAGGTCCAGCTATAAA
GTATCTCGTGTGGCATATAAGGAAGGACTGGTCATTTGCGTTTGCTCAGG
ATGCCGGAGAAGACACTTAATCGCTGATAACATGGGGTTGATGGACTTCG
ATGACTTCAGGCACATTGAAGAGTTCATGGCAGAGAGGGGAGACGAAGGG
GACATTGTGAAAAGAGTCAGCTCCCTTACCCCAGAGGGTATAGTTCTTGA
GGCAGTGGAACCTGATGATGTGTAA
back to top