mRNA_C-australica_Contig_1020.2.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match: A0A835YLU7_9STRA (DNL-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLU7_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 6.320e-20 Identity = 39/66 (59.09%), Postives = 55/66 (83.33%), Query Frame = 2 Query: 311 LSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMGLMDFDDF-RHIEEFMAERGD 505 ++L+FTC+ CD R+ YK+SRVAY +G+VIC CSGC+ RHLIADN GL+DF +F R+IE++M +G+ Sbjct: 1 MTLAFTCKKCDTRNIYKISRVAYYQGIVICTCSGCQSRHLIADNKGLLDFPEFGRNIEDYMESQGE 66
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match: A0A6H5JHA9_9PHAE (DNL-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA9_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 6.420e-17 Identity = 43/90 (47.78%), Postives = 66/90 (73.33%), Query Frame = 2 Query: 263 DPGASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMGLMDFDDF-RHIEEFMAERGDEGDIVKRV 529 D GA V G + LN K++LSFTC VCD ++++++RV++ +G+V+ C C ++HLIADN+G +DF +F R++EEFMA++G VKRV Sbjct: 84 DDGAEV--GHVMLNRKITLSFTCNVCDGHNTHQINRVSFMQGIVVLWCQHCNQKHLIADNLGKLDFPEFGRNLEEFMAKKGTP---VKRV 168
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match: A0A8D2E2Q0_SCIVU (DNL-type zinc finger n=2 Tax=Sciurini TaxID=337752 RepID=A0A8D2E2Q0_SCIVU) HSP 1 Score: 82.4 bits (202), Expect = 2.550e-16 Identity = 45/106 (42.45%), Postives = 69/106 (65.09%), Query Frame = 2 Query: 254 STADPGASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVSSLTPEGIVLEAV 568 S++ G +V+LG ++ L +TCRVC RSS ++S++AY +G+VI C GC+ H+IADN+G D D R+IEE +A RG++ V+RV+ ++LEAV Sbjct: 49 SSSGSGPAVALGHVETT-HYQLVYTCRVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLDGKRNIEEILASRGEK---VRRVAGQGALELILEAV 150
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match: A0A1U7QQ44_MESAU (DNL-type zinc finger protein isoform X1 n=4 Tax=Cricetidae TaxID=337677 RepID=A0A1U7QQ44_MESAU) HSP 1 Score: 82.4 bits (202), Expect = 3.000e-16 Identity = 46/104 (44.23%), Postives = 69/104 (66.35%), Query Frame = 2 Query: 266 PGASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVSSLTPEGIVLEAVEP 574 PGA+ LG+++ + + L +TC+VC RSS ++S++AY +G+VI C GC+ H+IADN+G D R+IEE +A RG+E V+RVS ++LEA EP Sbjct: 57 PGAA--LGRVEAD-RYQLVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLKGKRNIEEILAARGEE---VRRVSGEGALELILEAAEP 154
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match: A0A250YAZ2_CASCN (DNL-type zinc finger n=1 Tax=Castor canadensis TaxID=51338 RepID=A0A250YAZ2_CASCN) HSP 1 Score: 80.9 bits (198), Expect = 1.180e-15 Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 2 Query: 254 STADPGASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVS 532 ST+ PG + +LG+++ L +TC+VC RSS ++S++AY +G+VI C GC+ H+IADN+G D D R+IEE +A RG+E V+RV+ Sbjct: 47 STSGPGPAAALGRVEA-AHYQLVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLDGKRNIEEILAARGEE---VRRVA 136
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match: A0A2K5RX38_CEBIM (DNL-type zinc finger n=2 Tax=Cebus imitator TaxID=2715852 RepID=A0A2K5RX38_CEBIM) HSP 1 Score: 79.7 bits (195), Expect = 3.400e-15 Identity = 43/105 (40.95%), Postives = 69/105 (65.71%), Query Frame = 2 Query: 254 STADPGASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVSSLTPEGIVLEA 565 S+++PG +LG++++ L +TC+VC RSS ++S++AY +G+VI C GC+ H+IADN+G D + R+IEE +A RG++ V RV+ +VLEA Sbjct: 49 SSSEPGPEAALGRVEV-AHYQLVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLNGKRNIEEILAARGEQ---VHRVAGEGALELVLEA 149
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match: UPI00033150A5 (DNL-type zinc finger protein n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI00033150A5) HSP 1 Score: 79.3 bits (194), Expect = 3.900e-15 Identity = 43/109 (39.45%), Postives = 67/109 (61.47%), Query Frame = 2 Query: 251 WSTADPGASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVSSLTPEGIVLEAVEP 574 W + S LG+++ L +TC+VC RSS ++S++AY++G+V+ C GC+ H+IADN+G D D R+IEE +A RG+E V+RV++ +VLE P Sbjct: 39 WGWSPRRTSSDLGRVEA-AHYQLVYTCKVCGTRSSNRISKLAYQQGVVLVTCPGCQNHHIIADNLGWFSDLDGKRNIEEILAARGEE---VRRVTNEGAVELVLETAGP 143
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match: UPI000B4F5195 (DNL-type zinc finger protein isoform X1 n=1 Tax=Meriones unguiculatus TaxID=10047 RepID=UPI000B4F5195) HSP 1 Score: 79.3 bits (194), Expect = 4.460e-15 Identity = 46/110 (41.82%), Postives = 70/110 (63.64%), Query Frame = 2 Query: 254 STADPGAS--VSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVSSLTPEGIVLEAVEP 574 S++ PG+ +LG++ ++ L +TC+VC RSS ++S++AY +G+VI C GC+ H+IADN+G D R+IEE +A RG+E V RVS ++LEA EP Sbjct: 49 SSSMPGSGHVTALGRVQVD-HYQLIYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLKGKRNIEEILAARGEE---VHRVSGDDALELILEAAEP 154
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match: A0A6I9JM28_CHRAS (DNL-type zinc finger protein n=1 Tax=Chrysochloris asiatica TaxID=185453 RepID=A0A6I9JM28_CHRAS) HSP 1 Score: 79.0 bits (193), Expect = 6.960e-15 Identity = 42/100 (42.00%), Postives = 65/100 (65.00%), Query Frame = 2 Query: 269 GASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVSSLTPEGIVLEA 565 G +LG+++ + L +TC+VC RSS ++S++AY +G+VI C GCR H+IADN+G D D R++EE +A RG++ V+RV+ +VLEA Sbjct: 56 GPGTALGRVE-SKHYQLVYTCKVCGTRSSKRISKLAYHQGVVIVTCQGCRNHHIIADNLGWFSDLDGKRNVEEILAARGEQ---VRRVAGDGALEVVLEA 151
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Match: UPI001C5344F4 (DNL-type zinc finger protein n=1 Tax=Dipodomys spectabilis TaxID=105255 RepID=UPI001C5344F4) HSP 1 Score: 78.6 bits (192), Expect = 8.930e-15 Identity = 43/107 (40.19%), Postives = 69/107 (64.49%), Query Frame = 2 Query: 257 TADPGASVSLGQIDLNPKLSLSFTCRVCDARSSYKVSRVAYKEGLVICVCSGCRRRHLIADNMG-LMDFDDFRHIEEFMAERGDEGDIVKRVSSLTPEGIVLEAVEP 574 T+ PG + +LG+++ L +TC+VC+ RSS ++S++AY G+VI C GC+ H+IADN+G D D R+IEE +A +G++ V+RV+ EG + +EP Sbjct: 48 TSGPGPAAALGRVEA-AHYQLVYTCKVCETRSSKRISKLAYHRGVVIVTCPGCQNHHIIADNLGWFSDLDGKRNIEEILAAKGEK---VRRVAG---EGALELTLEP 147 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1020.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1020.2.1 >prot_C-australica_Contig_1020.2.1 ID=prot_C-australica_Contig_1020.2.1|Name=mRNA_C-australica_Contig_1020.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=175bp MLPFFLIYLLALSEMAVAFHINPLVLTAGMRFAAVHRAKEGEGEEPTPLLback to top mRNA from alignment at C-australica_Contig_1020:1245..2201- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1020.2.1 ID=mRNA_C-australica_Contig_1020.2.1|Name=mRNA_C-australica_Contig_1020.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=957bp|location=Sequence derived from alignment at C-australica_Contig_1020:1245..2201- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1020:1245..2201- >mRNA_C-australica_Contig_1020.2.1 ID=mRNA_C-australica_Contig_1020.2.1|Name=mRNA_C-australica_Contig_1020.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=525bp|location=Sequence derived from alignment at C-australica_Contig_1020:1245..2201- (Chrysoparadoxa australica CS_1217)back to top |