Homology
BLAST of mRNA_C-australica_Contig_102.3.1 vs. uniprot
Match:
D8LQ17_ECTSI (Katanin p80 WD40 repeat-containing subunit B1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ17_ECTSI)
HSP 1 Score: 125 bits (314), Expect = 4.850e-28
Identity = 77/207 (37.20%), Postives = 115/207 (55.56%), Query Frame = 1
Query: 418 SRPRTAGRTWEAPSAPTDDEIIARTFMSRAHLTAALSHRLTHIRIIKRLWSEGDIGGLAKHLRSLEEEA-----SNLAIISDFLGAVGMAHKALSLEQAMLFTPLLEGLLRASQEAQVAVGLRCCKDFVSTYGSYIHLTRRAQVQG--VDLAAAERQERCDKCHELFLRLRLQAGHVEREFYKDLALQEEAASLSQQLRHFLK*SYF 1017
+RPRTA R W+ P P DDE+IA+T +SRA T+ LS+RLTH+R+++ W++GD+ G L LE A S +++DFL V + ++L+ + PLLEGL + + VA RC + V +G +I T A V VDLA +R RC + H F+R E EFY+D + A+++++LR + SYF
Sbjct: 769 TRPRTATRRWDRPGPPGDDEVIAKTLLSRATATSTLSNRLTHLRMLRYGWADGDVSGTISKLTRLERSATVADDSPRTVVADFLWVVPLDGTRVTLDHCLELMPLLEGLWKLDAGSCVAAATRCLESIVRRFGGFIRDTLAAPVAAGRVDLAREDRIARCREAHRAFIRGYHHLERSEGEFYEDRRI----AAVAERLRPLFE-SYF 970
BLAST of mRNA_C-australica_Contig_102.3.1 vs. uniprot
Match:
A0A6H5K3J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J5_9PHAE)
HSP 1 Score: 90.5 bits (223), Expect = 3.320e-16
Identity = 59/174 (33.91%), Postives = 86/174 (49.43%), Query Frame = 1
Query: 418 SRPRTAGRTWEAPSAPTDDEIIARTFMSRAHLTAALSHRLTHIRIIKRLWSEGDIGGLAKHLRSLEEEA-----SNLAIISDFLGAVGMAHKALSLEQAMLFTPLLEGLLRASQEAQ----------VAVGLRCCKDFVSTYGSYIHLTRRAQVQG--VDLAAAERQERCDKCH 888
+RPRTA R W+ P P +DE+IA+T +SRA T+ LS+R W++GD+ G L LE A S +++DFL V + ++L+ + PLLEGL + ++ VA RC + V +G +I T A V VDLA +R RC + H
Sbjct: 788 TRPRTATRRWDRPGPPGEDEVIAKTLLSRATATSTLSNRYG--------WADGDVSGTISKLTRLERSATVADDSPRTVVADFLWVVPLDGTRVTLDHCLELMPLLEGLWKVAETPACLPSFLTTRCVAAATRCLESIVRRFGGFIRDTLTAPVAAGRVDLAREDRVARCREAH 953
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_102.3.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 4.85e-28 / Id = 37.20 Expect = 3.32e-16 / Id = 33.91 Sequence D8LQ17_ECTSI A0A6H5K3J5_9PHAE
Match Name E-value Identity Description
D8LQ17_ECTSI 4.850e-28 37.20 Katanin p80 WD40 repeat-containing subunit B1 homo... [more] A0A6H5K3J5_9PHAE 3.320e-16 33.91 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Seed ortholog 2880.D8LQ17 Preferred name KATNB1 PFAMs Katanin_con80,WD40 Model size 1020 Max annot lvl 2759|Eukaryota KEGG ko ko:K18643 Hectar predicted targeting category other localisation GOs GO:0000151,GO:0000226,GO:0000922,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005874,GO:0005875,GO:0005886,GO:0006605,GO:0006810,GO:0006886,GO:0006996,GO:0007010,GO:0007017,GO:0007026,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008352,GO:0009987,GO:0010638,GO:0010639,GO:0010720,GO:0010941,GO:0010942,GO:0010975,GO:0010976,GO:0015031,GO:0015630,GO:0015631,GO:0015833,GO:0016020,GO:0016043,GO:0022008,GO:0030154,GO:0030424,GO:0030426,GO:0030427,GO:0030496,GO:0030901,GO:0031110,GO:0031111,GO:0031112,GO:0031114,GO:0031117,GO:0031344,GO:0031346,GO:0031461,GO:0032501,GO:0032502,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033267,GO:0034613,GO:0036477,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043242,GO:0043243,GO:0043244,GO:0044297,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044877,GO:0045184,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046907,GO:0046982,GO:0046983,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051013,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051493,GO:0051494,GO:0051495,GO:0051641,GO:0051649,GO:0051960,GO:0051962,GO:0060284,GO:0060322,GO:0065007,GO:0070507,GO:0070727,GO:0070840,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080008,GO:0097458,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:0120035,GO:0120038,GO:0150034,GO:1901879,GO:1901880,GO:1901881,GO:1902494,GO:1902903,GO:1902904,GO:1902905,GO:1990234,GO:2000026 Exons 13 Evalue 3.6e-28 EggNOG OGs KOG0267@1|root,KOG0267@2759|Eukaryota Description microtubule severing Cds size 981 COG category E BRITE ko00000,ko04812
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682586754.8496559-UTR-C-australica_Contig_102:5161..5188 1682586754.8496559-UTR-C-australica_Contig_102:5161..5188 Chrysoparadoxa australica CS_1217 UTR C-australica_Contig_102 5162..5188 + 1682586754.991808-UTR-C-australica_Contig_102:7630..7642 1682586754.991808-UTR-C-australica_Contig_102:7630..7642 Chrysoparadoxa australica CS_1217 UTR C-australica_Contig_102 7631..7642 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682586754.8617852-CDS-C-australica_Contig_102:5188..5201 1682586754.8617852-CDS-C-australica_Contig_102:5188..5201 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_102 5189..5201 + 1682586754.8738055-CDS-C-australica_Contig_102:5292..5362 1682586754.8738055-CDS-C-australica_Contig_102:5292..5362 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_102 5293..5362 + 1682586754.8831003-CDS-C-australica_Contig_102:5462..5531 1682586754.8831003-CDS-C-australica_Contig_102:5462..5531 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_102 5463..5531 + 1682586754.8930964-CDS-C-australica_Contig_102:5635..5744 1682586754.8930964-CDS-C-australica_Contig_102:5635..5744 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_102 5636..5744 + 1682586754.9055166-CDS-C-australica_Contig_102:5891..5995 1682586754.9055166-CDS-C-australica_Contig_102:5891..5995 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_102 5892..5995 + 1682586754.9150357-CDS-C-australica_Contig_102:6096..6181 1682586754.9150357-CDS-C-australica_Contig_102:6096..6181 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_102 6097..6181 + 1682586754.9250395-CDS-C-australica_Contig_102:6395..6478 1682586754.9250395-CDS-C-australica_Contig_102:6395..6478 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_102 6396..6478 + 1682586754.9349072-CDS-C-australica_Contig_102:6608..6704 1682586754.9349072-CDS-C-australica_Contig_102:6608..6704 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_102 6609..6704 + 1682586754.9506445-CDS-C-australica_Contig_102:6833..6930 1682586754.9506445-CDS-C-australica_Contig_102:6833..6930 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_102 6834..6930 + 1682586754.958622-CDS-C-australica_Contig_102:7109..7180 1682586754.958622-CDS-C-australica_Contig_102:7109..7180 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_102 7110..7180 + 1682586754.968082-CDS-C-australica_Contig_102:7309..7348 1682586754.968082-CDS-C-australica_Contig_102:7309..7348 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_102 7310..7348 + 1682586754.9759512-CDS-C-australica_Contig_102:7419..7471 1682586754.9759512-CDS-C-australica_Contig_102:7419..7471 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_102 7420..7471 + 1682586754.9838023-CDS-C-australica_Contig_102:7537..7630 1682586754.9838023-CDS-C-australica_Contig_102:7537..7630 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_102 7538..7630 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_102.3.1
>prot_C-australica_Contig_102.3.1 ID=prot_C-australica_Contig_102.3.1|Name=mRNA_C-australica_Contig_102.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=327bp
MGALAGRGAEHAAAPESKAISPRPQPNRLTVEADGTGLDLQSLAAALPIP back to top mRNA from alignment at C-australica_Contig_102:5162..7642+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_102.3.1 ID=mRNA_C-australica_Contig_102.3.1|Name=mRNA_C-australica_Contig_102.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2481bp|location=Sequence derived from alignment at C-australica_Contig_102:5162..7642+ (Chrysoparadoxa australica CS_1217)GCAGGCAGCAAGCGCGGGAGAGACGCC ATGGGCGCATTAG GTACGTGTAT
TCTGTTTTGGACGAAGAGGAGGCAAAGGCGCAACTTACGACGACCATGCC
TCTACCTCTTCACCCTGGTATGCATGCACAGCTGGCAGGGGGGCTGAGCA
TGCGGCAGCTCCTGAGAGCAAAGCAATCAGTCCACGACCCCAGCCCAACA
G GTAACCAGGCTGCCAATTGAATAGTATGACCACCCAATCAGTCTTACCC
CTAACTTACCTTGATGCAATCCCAAAATGTGCCTCCATATGTGCTTATCA
GGTTGACTGTAGAGGCCGATGGCACAGGGCTGGACCTTCAATCTCTAGCT
GCTGCATTGCCGATACCGAG GTATTGCTTAGTATGTGTAGTGTAACTGGA
CATGACAAGGGCAAAACGCAGACACGAACACATCCGATAGTATATCAAAC
TGACGTCTGTCTCCTGACTAACAGGTTCCCAGCTGGGGAGGGTCCGAGCC
TCGTTGAGAGAGATAGACGAACATATGACCAAGAGCAAGCTGCAAGGAGG
GAGAGAAAGGCCAGCCTCAGCAGTGAGAGAAAG GCAGGAAGAAAACAGTA
AAGGACTTACAGCTTATAGCCTATAGGAGCCGTGCTTAACCAGTTGTAAT
CCATCCCTAACTTGAGCACTCCTTCAGCCAGCTTGCTTTCAAGACTTTAG
CACTGACTGTGAGATTAATCCCCTTTCCAGAGAAGCCGGAGCGGCGAGAG
AGGGCTTCCCGCGGATGAGGGGGAGACCTCAACAGGGCGAGAGCTACGGA
GAAGGGCTGGGCTGGATGCAGATGGTGATGCTAG GTACAGGAGCTGAGCC
TTGACTCTGCTGCATCAGCCTGATTTGGGGGTCTGTATGACCTGTTCTGT
TGCTTGACACGGCATGACGTGACCCGACCTCTCAGCTTGGCACCACCGCT
TAGTGAGACTAGTAGGCCACGTACAGCTGGACGGACATGGGAGGCCCCCA
GTGCACCGACTGATGACGAG GTATTCGTTATCGTTCGCTAACATTGGATG
CTGGTTGATGGCAAGCTAGTTTTTTTTGACACGTCAGGCACGGCCCGCAG
CCTCCCTCTGCCACTCGCCATCAGCTTGTTGAGCCCGTTTTACTGGCTTT
ATCCCTTGGCCACCACCACCTGGCAGCCTCGTGCGGATGGCCCCCCTAAC
AGACCAGACCTTTTCCACCTGAATCACGCTTCAGATCATAGCCCGGACGT
TCATGAGCAGAGCTCATCTTACAGCAGCCCTCTCGCATCGCCTGACCCAC
ATCAGAATCATTAAGAG GTGAGTGAGTGAGTGAGTGAGTGAGTAGCTATG
AGGCCAGTGACCTAGCTTTGAGCGCGCTGTGCTCAAGACATAGATATCAG
TGCCATCTGTCCTGATGTTGCGCTGAAATGCGGCCTAACACACACAGGTT
GTGGTCTGAAGGGGACATTGGAGGCCTTGCCAAGCATCTCCGGAGCTTAG
AAGAGGAAGCCAGTAACTTAGCTATCATCAGTGACTTCCTGGG GTAAGCT
CTTGCTCTAAGTCCAGGGCACTTTTTGGCACCGAGAATCAACCGAGCTAG
AACACCTGATCCATGAGGTTGCCTGCAGGCCAGCCTGGTCATATTTGACA
GCCCCCCCCTACTCTACCTCAGCGCTGTGGGGATGGCACACAAGGCGCTG
TCTCTGGAGCAGGCTATGCTCTTCACACCTTTGCTTGAGGGTTTGCTCAG
GGCTTCACAGGAAGCACAG GTGAGATGCCTGACTAAGAGGACTCAAGCTC
AATCAAGCTTATGTTCAAGATGCCTTGGTTGACAGCGCCTTTGCCCTTGG
ACCTTGGCCATACGTCCTAAAGATCTCGACGGGCATGACTTGTGCTATTA
GACCAATGATCTTCTTTTGTGCTTACTTTGTACTTTCCACGAGGGCAGGT
TGCAGTTGGGCTAAGATGTTGCAAGGATTTTGTGTCTACATACGGGTCTT
ATATCCACCTGACTAGAAG GTGCACCACCTTTGATCAGCTGTGCGCACTG
GAGTGACTCGAGGACTGTCCTGCCCTGCAGCTATAGCCAGCCATGCTCTC
TAAGTATCAATGCCTTCCTCCTCATATGGACCTCATCAATATCCTCAGGG
CCCAGGTGCAAGGGGTGGACTTGGCAGCCGCTGAGAG GTAAGAGGCTTAA
CTGCGAGGAGGCTTCTGAACTTATTCTAACTGCCCCCATCTCTCACCTGT
TGTCCCAGGCAAGAGCGGTGTGATAAGTGTCATGAGCTGTTTCTTAGGTT
ACGATTGCAG GTAACTGCTGCCGCTCTGCTATGCCAAGCCCCTGCTGAAA
TCTGAAGTGCCCTCAAACTTACCCAGGCTGGACATGTTGAGAGAGAGTTC
TACAAGGACCTGGCCTTGCAAGAGGAAGCGGCAAGCCTGTCACAGCAGCT
GAGACACTTCTTAAAATAG TCTTATTTCCCC back to top Coding sequence (CDS) from alignment at C-australica_Contig_102:5162..7642+
>mRNA_C-australica_Contig_102.3.1 ID=mRNA_C-australica_Contig_102.3.1|Name=mRNA_C-australica_Contig_102.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=981bp|location=Sequence derived from alignment at C-australica_Contig_102:5162..7642+ (Chrysoparadoxa australica CS_1217) back to top