mRNA_C-australica_Contig_102.3.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_102.3.1
Unique NamemRNA_C-australica_Contig_102.3.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_102.3.1 vs. uniprot
Match: D8LQ17_ECTSI (Katanin p80 WD40 repeat-containing subunit B1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ17_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 4.850e-28
Identity = 77/207 (37.20%), Postives = 115/207 (55.56%), Query Frame = 1 
Query:  418 SRPRTAGRTWEAPSAPTDDEIIARTFMSRAHLTAALSHRLTHIRIIKRLWSEGDIGGLAKHLRSLEEEA-----SNLAIISDFLGAVGMAHKALSLEQAMLFTPLLEGLLRASQEAQVAVGLRCCKDFVSTYGSYIHLTRRAQVQG--VDLAAAERQERCDKCHELFLRLRLQAGHVEREFYKDLALQEEAASLSQQLRHFLK*SYF 1017
            +RPRTA R W+ P  P DDE+IA+T +SRA  T+ LS+RLTH+R+++  W++GD+ G    L  LE  A     S   +++DFL  V +    ++L+  +   PLLEGL +    + VA   RC +  V  +G +I  T  A V    VDLA  +R  RC + H  F+R        E EFY+D  +    A+++++LR   + SYF
Sbjct:  769 TRPRTATRRWDRPGPPGDDEVIAKTLLSRATATSTLSNRLTHLRMLRYGWADGDVSGTISKLTRLERSATVADDSPRTVVADFLWVVPLDGTRVTLDHCLELMPLLEGLWKLDAGSCVAAATRCLESIVRRFGGFIRDTLAAPVAAGRVDLAREDRIARCREAHRAFIRGYHHLERSEGEFYEDRRI----AAVAERLRPLFE-SYF 970
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BLAST of mRNA_C-australica_Contig_102.3.1 vs. uniprot
Match: A0A6H5K3J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J5_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 3.320e-16
Identity = 59/174 (33.91%), Postives = 86/174 (49.43%), Query Frame = 1 
Query:  418 SRPRTAGRTWEAPSAPTDDEIIARTFMSRAHLTAALSHRLTHIRIIKRLWSEGDIGGLAKHLRSLEEEA-----SNLAIISDFLGAVGMAHKALSLEQAMLFTPLLEGLLRASQEAQ----------VAVGLRCCKDFVSTYGSYIHLTRRAQVQG--VDLAAAERQERCDKCH 888
            +RPRTA R W+ P  P +DE+IA+T +SRA  T+ LS+R          W++GD+ G    L  LE  A     S   +++DFL  V +    ++L+  +   PLLEGL + ++             VA   RC +  V  +G +I  T  A V    VDLA  +R  RC + H
Sbjct:  788 TRPRTATRRWDRPGPPGEDEVIAKTLLSRATATSTLSNRYG--------WADGDVSGTISKLTRLERSATVADDSPRTVVADFLWVVPLDGTRVTLDHCLELMPLLEGLWKVAETPACLPSFLTTRCVAAATRCLESIVRRFGGFIRDTLTAPVAAGRVDLAREDRVARCREAH 953
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_102.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQ17_ECTSI4.850e-2837.20Katanin p80 WD40 repeat-containing subunit B1 homo... [more]
A0A6H5K3J5_9PHAE3.320e-1633.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_102contigC-australica_Contig_102:5162..7642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQ17
Preferred nameKATNB1
PFAMsKatanin_con80,WD40
Model size1020
Max annot lvl2759|Eukaryota
KEGG koko:K18643
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000226,GO:0000922,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005874,GO:0005875,GO:0005886,GO:0006605,GO:0006810,GO:0006886,GO:0006996,GO:0007010,GO:0007017,GO:0007026,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008352,GO:0009987,GO:0010638,GO:0010639,GO:0010720,GO:0010941,GO:0010942,GO:0010975,GO:0010976,GO:0015031,GO:0015630,GO:0015631,GO:0015833,GO:0016020,GO:0016043,GO:0022008,GO:0030154,GO:0030424,GO:0030426,GO:0030427,GO:0030496,GO:0030901,GO:0031110,GO:0031111,GO:0031112,GO:0031114,GO:0031117,GO:0031344,GO:0031346,GO:0031461,GO:0032501,GO:0032502,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033267,GO:0034613,GO:0036477,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043242,GO:0043243,GO:0043244,GO:0044297,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044877,GO:0045184,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046907,GO:0046982,GO:0046983,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051013,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051493,GO:0051494,GO:0051495,GO:0051641,GO:0051649,GO:0051960,GO:0051962,GO:0060284,GO:0060322,GO:0065007,GO:0070507,GO:0070727,GO:0070840,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080008,GO:0097458,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:0120035,GO:0120038,GO:0150034,GO:1901879,GO:1901880,GO:1901881,GO:1902494,GO:1902903,GO:1902904,GO:1902905,GO:1990234,GO:2000026
Exons13
Evalue3.6e-28
EggNOG OGsKOG0267@1|root,KOG0267@2759|Eukaryota
Descriptionmicrotubule severing
Cds size981
COG categoryE
BRITEko00000,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586754.8496559-UTR-C-australica_Contig_102:5161..51881682586754.8496559-UTR-C-australica_Contig_102:5161..5188Chrysoparadoxa australica CS_1217UTRC-australica_Contig_102 5162..5188 +
1682586754.991808-UTR-C-australica_Contig_102:7630..76421682586754.991808-UTR-C-australica_Contig_102:7630..7642Chrysoparadoxa australica CS_1217UTRC-australica_Contig_102 7631..7642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586754.8617852-CDS-C-australica_Contig_102:5188..52011682586754.8617852-CDS-C-australica_Contig_102:5188..5201Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 5189..5201 +
1682586754.8738055-CDS-C-australica_Contig_102:5292..53621682586754.8738055-CDS-C-australica_Contig_102:5292..5362Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 5293..5362 +
1682586754.8831003-CDS-C-australica_Contig_102:5462..55311682586754.8831003-CDS-C-australica_Contig_102:5462..5531Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 5463..5531 +
1682586754.8930964-CDS-C-australica_Contig_102:5635..57441682586754.8930964-CDS-C-australica_Contig_102:5635..5744Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 5636..5744 +
1682586754.9055166-CDS-C-australica_Contig_102:5891..59951682586754.9055166-CDS-C-australica_Contig_102:5891..5995Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 5892..5995 +
1682586754.9150357-CDS-C-australica_Contig_102:6096..61811682586754.9150357-CDS-C-australica_Contig_102:6096..6181Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 6097..6181 +
1682586754.9250395-CDS-C-australica_Contig_102:6395..64781682586754.9250395-CDS-C-australica_Contig_102:6395..6478Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 6396..6478 +
1682586754.9349072-CDS-C-australica_Contig_102:6608..67041682586754.9349072-CDS-C-australica_Contig_102:6608..6704Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 6609..6704 +
1682586754.9506445-CDS-C-australica_Contig_102:6833..69301682586754.9506445-CDS-C-australica_Contig_102:6833..6930Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 6834..6930 +
1682586754.958622-CDS-C-australica_Contig_102:7109..71801682586754.958622-CDS-C-australica_Contig_102:7109..7180Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 7110..7180 +
1682586754.968082-CDS-C-australica_Contig_102:7309..73481682586754.968082-CDS-C-australica_Contig_102:7309..7348Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 7310..7348 +
1682586754.9759512-CDS-C-australica_Contig_102:7419..74711682586754.9759512-CDS-C-australica_Contig_102:7419..7471Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 7420..7471 +
1682586754.9838023-CDS-C-australica_Contig_102:7537..76301682586754.9838023-CDS-C-australica_Contig_102:7537..7630Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 7538..7630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_102.3.1prot_C-australica_Contig_102.3.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_102 5189..7630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_102.3.1

>prot_C-australica_Contig_102.3.1 ID=prot_C-australica_Contig_102.3.1|Name=mRNA_C-australica_Contig_102.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=327bp
MGALAGRGAEHAAAPESKAISPRPQPNRLTVEADGTGLDLQSLAAALPIP
RFPAGEGPSLVERDRRTYDQEQAARRERKASLSSERKRSRSGERGLPADE
GETSTGRELRRRAGLDADGDASLAPPLSETSRPRTAGRTWEAPSAPTDDE
IIARTFMSRAHLTAALSHRLTHIRIIKRLWSEGDIGGLAKHLRSLEEEAS
NLAIISDFLGAVGMAHKALSLEQAMLFTPLLEGLLRASQEAQVAVGLRCC
KDFVSTYGSYIHLTRRAQVQGVDLAAAERQERCDKCHELFLRLRLQAGHV
EREFYKDLALQEEAASLSQQLRHFLK*
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mRNA from alignment at C-australica_Contig_102:5162..7642+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_102.3.1 ID=mRNA_C-australica_Contig_102.3.1|Name=mRNA_C-australica_Contig_102.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2481bp|location=Sequence derived from alignment at C-australica_Contig_102:5162..7642+ (Chrysoparadoxa australica CS_1217)
GCAGGCAGCAAGCGCGGGAGAGACGCCATGGGCGCATTAGGTACGTGTAT
TCTGTTTTGGACGAAGAGGAGGCAAAGGCGCAACTTACGACGACCATGCC
TCTACCTCTTCACCCTGGTATGCATGCACAGCTGGCAGGGGGGCTGAGCA
TGCGGCAGCTCCTGAGAGCAAAGCAATCAGTCCACGACCCCAGCCCAACA
GGTAACCAGGCTGCCAATTGAATAGTATGACCACCCAATCAGTCTTACCC
CTAACTTACCTTGATGCAATCCCAAAATGTGCCTCCATATGTGCTTATCA
GGTTGACTGTAGAGGCCGATGGCACAGGGCTGGACCTTCAATCTCTAGCT
GCTGCATTGCCGATACCGAGGTATTGCTTAGTATGTGTAGTGTAACTGGA
CATGACAAGGGCAAAACGCAGACACGAACACATCCGATAGTATATCAAAC
TGACGTCTGTCTCCTGACTAACAGGTTCCCAGCTGGGGAGGGTCCGAGCC
TCGTTGAGAGAGATAGACGAACATATGACCAAGAGCAAGCTGCAAGGAGG
GAGAGAAAGGCCAGCCTCAGCAGTGAGAGAAAGGCAGGAAGAAAACAGTA
AAGGACTTACAGCTTATAGCCTATAGGAGCCGTGCTTAACCAGTTGTAAT
CCATCCCTAACTTGAGCACTCCTTCAGCCAGCTTGCTTTCAAGACTTTAG
CACTGACTGTGAGATTAATCCCCTTTCCAGAGAAGCCGGAGCGGCGAGAG
AGGGCTTCCCGCGGATGAGGGGGAGACCTCAACAGGGCGAGAGCTACGGA
GAAGGGCTGGGCTGGATGCAGATGGTGATGCTAGGTACAGGAGCTGAGCC
TTGACTCTGCTGCATCAGCCTGATTTGGGGGTCTGTATGACCTGTTCTGT
TGCTTGACACGGCATGACGTGACCCGACCTCTCAGCTTGGCACCACCGCT
TAGTGAGACTAGTAGGCCACGTACAGCTGGACGGACATGGGAGGCCCCCA
GTGCACCGACTGATGACGAGGTATTCGTTATCGTTCGCTAACATTGGATG
CTGGTTGATGGCAAGCTAGTTTTTTTTGACACGTCAGGCACGGCCCGCAG
CCTCCCTCTGCCACTCGCCATCAGCTTGTTGAGCCCGTTTTACTGGCTTT
ATCCCTTGGCCACCACCACCTGGCAGCCTCGTGCGGATGGCCCCCCTAAC
AGACCAGACCTTTTCCACCTGAATCACGCTTCAGATCATAGCCCGGACGT
TCATGAGCAGAGCTCATCTTACAGCAGCCCTCTCGCATCGCCTGACCCAC
ATCAGAATCATTAAGAGGTGAGTGAGTGAGTGAGTGAGTGAGTAGCTATG
AGGCCAGTGACCTAGCTTTGAGCGCGCTGTGCTCAAGACATAGATATCAG
TGCCATCTGTCCTGATGTTGCGCTGAAATGCGGCCTAACACACACAGGTT
GTGGTCTGAAGGGGACATTGGAGGCCTTGCCAAGCATCTCCGGAGCTTAG
AAGAGGAAGCCAGTAACTTAGCTATCATCAGTGACTTCCTGGGGTAAGCT
CTTGCTCTAAGTCCAGGGCACTTTTTGGCACCGAGAATCAACCGAGCTAG
AACACCTGATCCATGAGGTTGCCTGCAGGCCAGCCTGGTCATATTTGACA
GCCCCCCCCTACTCTACCTCAGCGCTGTGGGGATGGCACACAAGGCGCTG
TCTCTGGAGCAGGCTATGCTCTTCACACCTTTGCTTGAGGGTTTGCTCAG
GGCTTCACAGGAAGCACAGGTGAGATGCCTGACTAAGAGGACTCAAGCTC
AATCAAGCTTATGTTCAAGATGCCTTGGTTGACAGCGCCTTTGCCCTTGG
ACCTTGGCCATACGTCCTAAAGATCTCGACGGGCATGACTTGTGCTATTA
GACCAATGATCTTCTTTTGTGCTTACTTTGTACTTTCCACGAGGGCAGGT
TGCAGTTGGGCTAAGATGTTGCAAGGATTTTGTGTCTACATACGGGTCTT
ATATCCACCTGACTAGAAGGTGCACCACCTTTGATCAGCTGTGCGCACTG
GAGTGACTCGAGGACTGTCCTGCCCTGCAGCTATAGCCAGCCATGCTCTC
TAAGTATCAATGCCTTCCTCCTCATATGGACCTCATCAATATCCTCAGGG
CCCAGGTGCAAGGGGTGGACTTGGCAGCCGCTGAGAGGTAAGAGGCTTAA
CTGCGAGGAGGCTTCTGAACTTATTCTAACTGCCCCCATCTCTCACCTGT
TGTCCCAGGCAAGAGCGGTGTGATAAGTGTCATGAGCTGTTTCTTAGGTT
ACGATTGCAGGTAACTGCTGCCGCTCTGCTATGCCAAGCCCCTGCTGAAA
TCTGAAGTGCCCTCAAACTTACCCAGGCTGGACATGTTGAGAGAGAGTTC
TACAAGGACCTGGCCTTGCAAGAGGAAGCGGCAAGCCTGTCACAGCAGCT
GAGACACTTCTTAAAATAGTCTTATTTCCCC
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Coding sequence (CDS) from alignment at C-australica_Contig_102:5162..7642+

>mRNA_C-australica_Contig_102.3.1 ID=mRNA_C-australica_Contig_102.3.1|Name=mRNA_C-australica_Contig_102.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=981bp|location=Sequence derived from alignment at C-australica_Contig_102:5162..7642+ (Chrysoparadoxa australica CS_1217)
ATGGGCGCATTAGCTGGCAGGGGGGCTGAGCATGCGGCAGCTCCTGAGAG
CAAAGCAATCAGTCCACGACCCCAGCCCAACAGGTTGACTGTAGAGGCCG
ATGGCACAGGGCTGGACCTTCAATCTCTAGCTGCTGCATTGCCGATACCG
AGGTTCCCAGCTGGGGAGGGTCCGAGCCTCGTTGAGAGAGATAGACGAAC
ATATGACCAAGAGCAAGCTGCAAGGAGGGAGAGAAAGGCCAGCCTCAGCA
GTGAGAGAAAGAGAAGCCGGAGCGGCGAGAGAGGGCTTCCCGCGGATGAG
GGGGAGACCTCAACAGGGCGAGAGCTACGGAGAAGGGCTGGGCTGGATGC
AGATGGTGATGCTAGCTTGGCACCACCGCTTAGTGAGACTAGTAGGCCAC
GTACAGCTGGACGGACATGGGAGGCCCCCAGTGCACCGACTGATGACGAG
ATCATAGCCCGGACGTTCATGAGCAGAGCTCATCTTACAGCAGCCCTCTC
GCATCGCCTGACCCACATCAGAATCATTAAGAGGTTGTGGTCTGAAGGGG
ACATTGGAGGCCTTGCCAAGCATCTCCGGAGCTTAGAAGAGGAAGCCAGT
AACTTAGCTATCATCAGTGACTTCCTGGGCGCTGTGGGGATGGCACACAA
GGCGCTGTCTCTGGAGCAGGCTATGCTCTTCACACCTTTGCTTGAGGGTT
TGCTCAGGGCTTCACAGGAAGCACAGGTTGCAGTTGGGCTAAGATGTTGC
AAGGATTTTGTGTCTACATACGGGTCTTATATCCACCTGACTAGAAGGGC
CCAGGTGCAAGGGGTGGACTTGGCAGCCGCTGAGAGGCAAGAGCGGTGTG
ATAAGTGTCATGAGCTGTTTCTTAGGTTACGATTGCAGGCTGGACATGTT
GAGAGAGAGTTCTACAAGGACCTGGCCTTGCAAGAGGAAGCGGCAAGCCT
GTCACAGCAGCTGAGACACTTCTTAAAATAG
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