mRNA_C-australica_Contig_10171.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10171.1.1
Unique NamemRNA_C-australica_Contig_10171.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10171.1.1 vs. uniprot
Match: A0A2T6BAE3_9RHOB (Cbb3-type cytochrome oxidase maturation protein n=4 Tax=Rhodobacterales TaxID=204455 RepID=A0A2T6BAE3_9RHOB)

HSP 1 Score: 103 bits (256), Expect = 5.200e-28
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 1
Query:    4 NILAYLIPISLILGGLGLAFFVFTLRSNQYDDPEGDAQRILSGEYDDHPKQD 159
            NILAYLIPISLILGGLGL FFVFT+RSNQYDDPEGDAQRILSGEYDDHPKQD
Sbjct:    2 NILAYLIPISLILGGLGLVFFVFTVRSNQYDDPEGDAQRILSGEYDDHPKQD 53          
BLAST of mRNA_C-australica_Contig_10171.1.1 vs. uniprot
Match: A0A0B3S8H0_9RHOB (Cytochrome c oxidase subunit II n=12 Tax=Rhodobacterales TaxID=204455 RepID=A0A0B3S8H0_9RHOB)

HSP 1 Score: 99.0 bits (245), Expect = 2.480e-26
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 1
Query:    4 NILAYLIPISLILGGLGLAFFVFTLRSNQYDDPEGDAQRILSGEYDDHPKQD 159
            NIL YLIPISL+LGG GLAFFVFTLRSNQYDDPEGDAQRILSGEYDD PKQD
Sbjct:    2 NILTYLIPISLVLGGAGLAFFVFTLRSNQYDDPEGDAQRILSGEYDDRPKQD 53          
BLAST of mRNA_C-australica_Contig_10171.1.1 vs. uniprot
Match: A0A6B2PG48_9RHOB (Cbb3-type cytochrome oxidase assembly protein CcoS n=9 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A6B2PG48_9RHOB)

HSP 1 Score: 95.5 bits (236), Expect = 5.880e-25
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 1
Query:    4 NILAYLIPISLILGGLGLAFFVFTLRSNQYDDPEGDAQRILSGEYDDHPKQD 159
            NILAYLIPISLILGGLGLAFFVFT+++ QYDDPEGDAQRILSG+YDD PKQD
Sbjct:    2 NILAYLIPISLILGGLGLAFFVFTVKTRQYDDPEGDAQRILSGKYDDRPKQD 53          
BLAST of mRNA_C-australica_Contig_10171.1.1 vs. uniprot
Match: UPI000F8F1684 (cbb3-type cytochrome oxidase assembly protein CcoS n=1 Tax=Shimia sediminis TaxID=2497945 RepID=UPI000F8F1684)

HSP 1 Score: 94.4 bits (233), Expect = 1.650e-24
Identity = 43/50 (86.00%), Postives = 49/50 (98.00%), Query Frame = 1
Query:    4 NILAYLIPISLILGGLGLAFFVFTLRSNQYDDPEGDAQRILSGEYDDHPK 153
            N+L+YLIPISLILGG+GL FF+FT+RSNQYDDPEGDAQRILSGE+DDHPK
Sbjct:    2 NVLSYLIPISLILGGIGLLFFIFTVRSNQYDDPEGDAQRILSGEWDDHPK 51          
BLAST of mRNA_C-australica_Contig_10171.1.1 vs. uniprot
Match: A3K3F8_9RHOB (Cytochrome oxidase maturation protein, cbb3-type n=1 Tax=Sagittula stellata E-37 TaxID=388399 RepID=A3K3F8_9RHOB)

HSP 1 Score: 94.4 bits (233), Expect = 1.690e-24
Identity = 43/52 (82.69%), Postives = 49/52 (94.23%), Query Frame = 1
Query:    4 NILAYLIPISLILGGLGLAFFVFTLRSNQYDDPEGDAQRILSGEYDDHPKQD 159
            N+L YLIPISL+LGG+GL FFVFT+RSNQY+DPEGDAQRILSG+YDD PKQD
Sbjct:    2 NVLTYLIPISLVLGGMGLLFFVFTIRSNQYEDPEGDAQRILSGDYDDRPKQD 53          
BLAST of mRNA_C-australica_Contig_10171.1.1 vs. uniprot
Match: A0A0P1G8G8_9RHOB (Cytochrome oxidase maturation protein, cbb3-type n=1 Tax=Tropicibacter naphthalenivorans TaxID=441103 RepID=A0A0P1G8G8_9RHOB)

HSP 1 Score: 93.6 bits (231), Expect = 3.330e-24
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 1
Query:    4 NILAYLIPISLILGGLGLAFFVFTLRSNQYDDPEGDAQRILSGEYDDHPK 153
            NIL YLIPISL+LGG+GL FF+FT+++NQYDDPEGDAQRILSGEYDDHPK
Sbjct:    2 NILTYLIPISLVLGGVGLLFFIFTIKTNQYDDPEGDAQRILSGEYDDHPK 51          
BLAST of mRNA_C-australica_Contig_10171.1.1 vs. uniprot
Match: A0A7W6GU79_9RHOB (Cbb3-type cytochrome oxidase maturation protein n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A7W6GU79_9RHOB)

HSP 1 Score: 91.7 bits (226), Expect = 2.080e-23
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    4 NILAYLIPISLILGGLGLAFFVFTLRSNQYDDPEGDAQRILSGEYDDHPK 153
            NIL YLIPISLILGG+GL FF+FT+RSNQYDDPEGDA+RILSGEYDD PK
Sbjct:    2 NILTYLIPISLILGGMGLLFFIFTIRSNQYDDPEGDARRILSGEYDDKPK 51          
BLAST of mRNA_C-australica_Contig_10171.1.1 vs. uniprot
Match: UPI001EE1FD98 (cbb3-type cytochrome oxidase assembly protein CcoS n=1 Tax=Mesobacterium pallidum TaxID=2872037 RepID=UPI001EE1FD98)

HSP 1 Score: 91.3 bits (225), Expect = 2.750e-23
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = 1
Query:    4 NILAYLIPISLILGGLGLAFFVFTLRSNQYDDPEGDAQRILSGEYDDHPK 153
            NILAYLIPISLILGG+GLAFFVFT+++ QYDDPEGDAQRILSG+YDD PK
Sbjct:    2 NILAYLIPISLILGGIGLAFFVFTVKTRQYDDPEGDAQRILSGDYDDRPK 51          
BLAST of mRNA_C-australica_Contig_10171.1.1 vs. uniprot
Match: A0A372EZK5_9RHOB (Cbb3-type cytochrome oxidase assembly protein CcoS n=1 Tax=Rhodobacteraceae bacterium 63075 TaxID=2301226 RepID=A0A372EZK5_9RHOB)

HSP 1 Score: 91.3 bits (225), Expect = 2.810e-23
Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = 1
Query:    4 NILAYLIPISLILGGLGLAFFVFTLRSNQYDDPEGDAQRILSGEYDDHPKQD 159
            NIL YLIPISL+LGG GLAFF++TLR+NQYDDPEGDA+RILS EYDD PKQD
Sbjct:    2 NILTYLIPISLLLGGAGLAFFIYTLRTNQYDDPEGDARRILSDEYDDKPKQD 53          
BLAST of mRNA_C-australica_Contig_10171.1.1 vs. uniprot
Match: UPI001D0C2827 (cbb3-type cytochrome oxidase assembly protein CcoS n=1 Tax=Cognatishimia sp. F0-27 TaxID=2816855 RepID=UPI001D0C2827)

HSP 1 Score: 91.3 bits (225), Expect = 2.810e-23
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 1
Query:    4 NILAYLIPISLILGGLGLAFFVFTLRSNQYDDPEGDAQRILSGEYDDHPKQD 159
            NILAYLIPISLILG LGL FFV+TLRSNQYDDPEGDAQRILS  YDD PKQD
Sbjct:    2 NILAYLIPISLILGTLGLGFFVWTLRSNQYDDPEGDAQRILSDTYDDRPKQD 53          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10171.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2T6BAE3_9RHOB5.200e-2896.15Cbb3-type cytochrome oxidase maturation protein n=... [more]
A0A0B3S8H0_9RHOB2.480e-2692.31Cytochrome c oxidase subunit II n=12 Tax=Rhodobact... [more]
A0A6B2PG48_9RHOB5.880e-2588.46Cbb3-type cytochrome oxidase assembly protein CcoS... [more]
UPI000F8F16841.650e-2486.00cbb3-type cytochrome oxidase assembly protein CcoS... [more]
A3K3F8_9RHOB1.690e-2482.69Cytochrome oxidase maturation protein, cbb3-type n... [more]
A0A0P1G8G8_9RHOB3.330e-2484.00Cytochrome oxidase maturation protein, cbb3-type n... [more]
A0A7W6GU79_9RHOB2.080e-2386.00Cbb3-type cytochrome oxidase maturation protein n=... [more]
UPI001EE1FD982.750e-2386.00cbb3-type cytochrome oxidase assembly protein CcoS... [more]
A0A372EZK5_9RHOB2.810e-2382.69Cbb3-type cytochrome oxidase assembly protein CcoS... [more]
UPI001D0C28272.810e-2388.46cbb3-type cytochrome oxidase assembly protein CcoS... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10171contigC-australica_Contig_10171:38..199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog388399.SSE37_11029
Preferred nameccoS
PFAMsFixS
Model size162
Max annot lvl2|Bacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.77e-25
EggNOG OGsCOG3197@1|root,COG3197@2|Bacteria
DescriptionCytochrome oxidase maturation protein
Cds size162
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586752.268051-CDS-C-australica_Contig_10171:37..1991682586752.268051-CDS-C-australica_Contig_10171:37..199Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10171 38..199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10171.1.1prot_C-australica_Contig_10171.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10171 38..199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10171.1.1

>prot_C-australica_Contig_10171.1.1 ID=prot_C-australica_Contig_10171.1.1|Name=mRNA_C-australica_Contig_10171.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=54bp
VNILAYLIPISLILGGLGLAFFVFTLRSNQYDDPEGDAQRILSGEYDDHP
KQD*
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mRNA from alignment at C-australica_Contig_10171:38..199+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10171.1.1 ID=mRNA_C-australica_Contig_10171.1.1|Name=mRNA_C-australica_Contig_10171.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=162bp|location=Sequence derived from alignment at C-australica_Contig_10171:38..199+ (Chrysoparadoxa australica CS_1217)
GTGAACATCCTTGCCTACCTGATCCCGATTTCTCTGATCCTTGGCGGCCT CGGCCTAGCCTTTTTCGTCTTCACCCTAAGGTCCAACCAGTACGACGACC CCGAAGGAGACGCGCAGAGAATCCTCTCCGGCGAATACGACGACCATCCC AAACAGGACTAA
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Coding sequence (CDS) from alignment at C-australica_Contig_10171:38..199+

>mRNA_C-australica_Contig_10171.1.1 ID=mRNA_C-australica_Contig_10171.1.1|Name=mRNA_C-australica_Contig_10171.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=162bp|location=Sequence derived from alignment at C-australica_Contig_10171:38..199+ (Chrysoparadoxa australica CS_1217)
GTGAACATCCTTGCCTACCTGATCCCGATTTCTCTGATCCTTGGCGGCCT
CGGCCTAGCCTTTTTCGTCTTCACCCTAAGGTCCAACCAGTACGACGACC
CCGAAGGAGACGCGCAGAGAATCCTCTCCGGCGAATACGACGACCATCCC
AAACAGGACTAA
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