mRNA_C-australica_Contig_1016.5.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1016.5.1
Unique NamemRNA_C-australica_Contig_1016.5.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1016.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1016contigC-australica_Contig_1016:12181..13109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size590
Hectar predicted targeting categoryother localisation
Exons4
Cds size588
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586750.6304681-CDS-C-australica_Contig_1016:12180..122291682586750.6304681-CDS-C-australica_Contig_1016:12180..12229Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1016 12181..12229 -
1682586750.640499-CDS-C-australica_Contig_1016:12392..128611682586750.640499-CDS-C-australica_Contig_1016:12392..12861Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1016 12393..12861 -
1682586750.6508718-CDS-C-australica_Contig_1016:12956..129931682586750.6508718-CDS-C-australica_Contig_1016:12956..12993Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1016 12957..12993 -
1682586750.6681616-CDS-C-australica_Contig_1016:13076..131091682586750.6681616-CDS-C-australica_Contig_1016:13076..13109Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1016 13077..13109 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1016.5.1prot_C-australica_Contig_1016.5.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1016 12181..13109 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1016.5.1

>prot_C-australica_Contig_1016.5.1 ID=prot_C-australica_Contig_1016.5.1|Name=mRNA_C-australica_Contig_1016.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=196bp
VTIPGIFQPLQVAQSRHQTHAAAEAGWRRRVLVKLKARLEQRLLGLGHID
TTEAAETTEGPVEVEVLENDLAKVEAELGKLGGEVVPSVLSVSPAQEGEE
EGAVATAGIGTDTGVSESETDGTRMGMGMPGVSCDPNRLADSFESHSAAP
ASAPTEVPEQHMQDMQDLERPANFQLLRRRSSVIAQKALLDKATRA
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mRNA from alignment at C-australica_Contig_1016:12181..13109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1016.5.1 ID=mRNA_C-australica_Contig_1016.5.1|Name=mRNA_C-australica_Contig_1016.5.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=929bp|location=Sequence derived from alignment at C-australica_Contig_1016:12181..13109- (Chrysoparadoxa australica CS_1217)
GTCACTATACCAGGCATCTTCCAGCCATTACAGGTGGAACATCATGCATA
GTACACAACCATGCATGCCTATCTGTACCAACTAACCCGCCTGTCACTCT
TATCTCATTGTACCAGGTAGCACAAAGCAGGCACCAAACCCATGCAGCTG
CAGGTACTTGCCACACTCACACTCCTTCCTTCCACTGCTCTGTCATCCAA
TCCATAGATTCATTTAACCCACTCATCACACTGATACTTCTTCTACAGAA
GCTGGTTGGCGTAGACGGGTGCTGGTTAAGTTGAAGGCACGACTGGAGCA
GCGCTTGCTTGGGCTAGGTCACATTGATACTACTGAGGCTGCTGAGACTA
CTGAGGGACCAGTTGAGGTGGAAGTATTAGAGAATGACCTGGCAAAGGTT
GAGGCTGAGCTTGGAAAGCTAGGTGGTGAGGTGGTTCCTTCAGTCCTTTC
AGTGTCACCAGCACAAGAGGGGGAAGAGGAGGGTGCTGTTGCCACCGCAG
GCATTGGCACTGACACTGGCGTGAGCGAGTCTGAGACTGACGGCACCAGA
ATGGGCATGGGCATGCCTGGAGTCAGCTGTGATCCCAATAGGCTGGCCGA
CTCTTTTGAAAGTCACTCTGCTGCACCTGCATCAGCACCAACGGAAGTGC
CAGAGCAACACATGCAAGACATGCAGGACCTGGAGCGTCCAGCTAATTTC
CAGTTACTGAGACGCAGGTTAGACAACCACGCAGCTTGTCGTGCCACTGC
CCTGCAGCTGCCTCACACATGGCTAGACGTACTCCTCTACCAGTTCTTTA
GCTTTTTCCCCTGGCTGTGCTCCCCGCAATAGCTCCTTTTACACACACAC
TCACATGCACCCCTGCCTCCAACCGAGCAGATCTTCTGTGATAGCTCAGA
AGGCACTTCTTGATAAGGCAACACGCGCG
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Coding sequence (CDS) from alignment at C-australica_Contig_1016:12181..13109-

>mRNA_C-australica_Contig_1016.5.1 ID=mRNA_C-australica_Contig_1016.5.1|Name=mRNA_C-australica_Contig_1016.5.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=588bp|location=Sequence derived from alignment at C-australica_Contig_1016:12181..13109- (Chrysoparadoxa australica CS_1217)
GTCACTATACCAGGCATCTTCCAGCCATTACAGGTAGCACAAAGCAGGCA
CCAAACCCATGCAGCTGCAGAAGCTGGTTGGCGTAGACGGGTGCTGGTTA
AGTTGAAGGCACGACTGGAGCAGCGCTTGCTTGGGCTAGGTCACATTGAT
ACTACTGAGGCTGCTGAGACTACTGAGGGACCAGTTGAGGTGGAAGTATT
AGAGAATGACCTGGCAAAGGTTGAGGCTGAGCTTGGAAAGCTAGGTGGTG
AGGTGGTTCCTTCAGTCCTTTCAGTGTCACCAGCACAAGAGGGGGAAGAG
GAGGGTGCTGTTGCCACCGCAGGCATTGGCACTGACACTGGCGTGAGCGA
GTCTGAGACTGACGGCACCAGAATGGGCATGGGCATGCCTGGAGTCAGCT
GTGATCCCAATAGGCTGGCCGACTCTTTTGAAAGTCACTCTGCTGCACCT
GCATCAGCACCAACGGAAGTGCCAGAGCAACACATGCAAGACATGCAGGA
CCTGGAGCGTCCAGCTAATTTCCAGTTACTGAGACGCAGATCTTCTGTGA
TAGCTCAGAAGGCACTTCTTGATAAGGCAACACGCGCG
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