mRNA_C-australica_Contig_1015.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1015.1.1
Unique NamemRNA_C-australica_Contig_1015.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_1015.1.1 vs. uniprot
Match: A0A835Z8H7_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H7_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.420e-28
Identity = 67/138 (48.55%), Postives = 88/138 (63.77%), Query Frame = 1
Query:  115 RSLRSMRMAAGVIDLPEGETA----FQEMVLDGEGPILVIFGAKW----------CGPCQLVEPITKKTAAQYEGKLK---VIKVNTEQHEPLVGKYSIYGLPYLMVFENGEIIGTHEGAIGGKGMEKLLADAVPSLV 477
            R+  S    A VIDL + + A    F E+VL+ + P+LV F A            CGPC+L+EP+ KKTA +YEGK+K   V+KVNTE H+ LVG+Y+IYGLP L VF +G++ G HEGA G   MEKLL  A+P +V
Sbjct:   38 RAACSQLRMAQVIDLDDVDVAKGATFSELVLESDTPVLVDFYANSSLRLFVDVCRCGPCKLIEPLVKKTAEKYEGKMKAEQVVKVNTEVHKELVGQYNIYGLPLLAVFVDGQVKGVHEGAAGAAQMEKLLKGALPEMV 175          
BLAST of mRNA_C-australica_Contig_1015.1.1 vs. uniprot
Match: A0A0D2MZR6_9CHLO (Thioredoxin domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MZR6_9CHLO)

HSP 1 Score: 104 bits (260), Expect = 7.960e-24
Identity = 54/114 (47.37%), Postives = 79/114 (69.30%), Query Frame = 1
Query:  142 AGVIDLPEGETAFQEMVLDGEGPILVIFGAKWCGPCQLVEPITKKTAAQYEGKLKVIKVNTEQHEPLVGKYSIYGLPYLMVFENGEII-GTH-EGAIGGKGMEKLLADAVPSLV 477
            A V+++ EGE A+ E VL  + P+LV F A WCGPC+LV P+ +    +YEG+LKV+KVN   +  LV KY +YGLP LMVF++G+++ G+H EGA+G   + K +   VP++V
Sbjct:   12 ARVVEI-EGEEAWNEHVLKSDKPVLVDFWAVWCGPCKLVAPLMEWAEKEYEGRLKVVKVNHTPNPELVAKYKVYGLPTLMVFKDGQLVEGSHREGAVGKSILVKYIDQHVPAVV 124          
BLAST of mRNA_C-australica_Contig_1015.1.1 vs. uniprot
Match: A0A7S0BHJ8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BHJ8_9RHOD)

HSP 1 Score: 103 bits (256), Expect = 1.680e-22
Identity = 53/120 (44.17%), Postives = 79/120 (65.83%), Query Frame = 1
Query:  115 RSLRSMRMAAGVIDLPEGETAFQEMVLDGEGPILVIFGAKWCGPCQLVEPITKKTAAQYEGKLKVIKVNTEQHEPLVGKYSIYGLPYLMVFENGEIIGTHEGAIGGKGMEKLLADAVPSL 474
            RS  SM+  + V      + +FQ  V++ + P+LV F A WCGPC+L+ P+    A++YEGKL+V+K++TE++   V +YSI+GLP L +F+NGE I   EGAIG + +  LL D +P L
Sbjct:   74 RSTLSMKAVSEV-----SKDSFQGEVMESDLPVLVDFYAAWCGPCKLIAPVMDWCASEYEGKLRVVKIDTEKYPNFVREYSIHGLPTLAIFKNGENISQIEGAIGKQKVLDLLKDNLPEL 188          
BLAST of mRNA_C-australica_Contig_1015.1.1 vs. uniprot
Match: A0A7W5EJA0_9GAMM (Thioredoxin n=2 Tax=Luteibacter sp. Sphag1AF TaxID=2587031 RepID=A0A7W5EJA0_9GAMM)

HSP 1 Score: 99.8 bits (247), Expect = 3.550e-22
Identity = 43/99 (43.43%), Postives = 69/99 (69.70%), Query Frame = 1
Query:  169 ETAFQEMVLDGEGPILVIFGAKWCGPCQLVEPITKKTAAQYEGKLKVIKVNTEQHEPLVGKYSIYGLPYLMVFENGEIIGTHEGAIGGKGMEKLLADAV 465
            + AFQ  VLD E P+L+ F A+WCGPC+ + PI  + AA+Y+GKLKV+K+N +Q++    ++ + G+P LMVF+ G++ GT  GA+G   +++L+   V
Sbjct:   10 DEAFQRHVLDSETPVLLDFWAEWCGPCKSIAPILDELAAEYQGKLKVVKINIDQNQQTPRQFGVRGIPTLMVFKGGKVEGTQIGAVGKGALQELIKKVV 108          
BLAST of mRNA_C-australica_Contig_1015.1.1 vs. uniprot
Match: A0A7J7INP8_9RHOD (Thioredoxin n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7INP8_9RHOD)

HSP 1 Score: 99.4 bits (246), Expect = 8.220e-22
Identity = 42/99 (42.42%), Postives = 67/99 (67.68%), Query Frame = 1
Query:  178 FQEMVLDGEGPILVIFGAKWCGPCQLVEPITKKTAAQYEGKLKVIKVNTEQHEPLVGKYSIYGLPYLMVFENGEIIGTHEGAIGGKGMEKLLADAVPSL 474
            F+  VL  E P+LV F A+WCGPC+L+ P+    AA+Y GK+K+ K++TEQ+   + +Y I GLP L++  NG+++  HEGAIG   + + L++ +P +
Sbjct:   26 FETEVLQAETPVLVDFYAEWCGPCKLIAPLIDWAAAEYSGKVKIFKLDTEQNPKFLPRYGISGLPTLILLRNGDVVAQHEGAIGKSALVQFLSENLPEI 124          
BLAST of mRNA_C-australica_Contig_1015.1.1 vs. uniprot
Match: A0A4R3YUN6_9GAMM (Thioredoxin n=1 Tax=Luteibacter rhizovicinus TaxID=242606 RepID=A0A4R3YUN6_9GAMM)

HSP 1 Score: 97.4 bits (241), Expect = 2.580e-21
Identity = 42/99 (42.42%), Postives = 68/99 (68.69%), Query Frame = 1
Query:  169 ETAFQEMVLDGEGPILVIFGAKWCGPCQLVEPITKKTAAQYEGKLKVIKVNTEQHEPLVGKYSIYGLPYLMVFENGEIIGTHEGAIGGKGMEKLLADAV 465
            + AFQ  VL+ + P+L+ F A+WCGPC+ + PI  + A QYEGKLKV+K+N +Q++    +Y + G+P LMVF+NG++  T  GA+G   + +++  A+
Sbjct:   10 DEAFQRHVLESDTPVLLDFWAEWCGPCKSIAPILDELATQYEGKLKVVKINIDQNQKTPREYGVRGIPTLMVFKNGKVEATQIGAVGKGQLTQMIDKAI 108          
BLAST of mRNA_C-australica_Contig_1015.1.1 vs. uniprot
Match: M2XHT7_GALSU (Thioredoxin 1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XHT7_GALSU)

HSP 1 Score: 98.2 bits (243), Expect = 7.220e-21
Identity = 41/102 (40.20%), Postives = 71/102 (69.61%), Query Frame = 1
Query:  169 ETAFQEMVLDGEGPILVIFGAKWCGPCQLVEPITKKTAAQYEGKLKVIKVNTEQHEPLVGKYSIYGLPYLMVFENGEIIGTHEGAIGGKGMEKLLADAVPSL 474
            +T F++ VL  + P+LV F A WCGPC+LV P+     ++Y GKLKV+K++T+++   V +Y + GLP L++F++G ++ + EGA+G KG+++ +   +P L
Sbjct:   66 DTHFEQQVLQSQIPVLVDFHADWCGPCKLVTPLLDWLVSEYGGKLKVVKIDTDKNPRYVKQYDVRGLPTLIIFQDGRLVASSEGALGKKGIQQYIEKHLPQL 167          
BLAST of mRNA_C-australica_Contig_1015.1.1 vs. uniprot
Match: UPI001F033DDC (thioredoxin TrxA n=1 Tax=Luteibacter TaxID=242605 RepID=UPI001F033DDC)

HSP 1 Score: 95.9 bits (237), Expect = 1.080e-20
Identity = 38/99 (38.38%), Postives = 68/99 (68.69%), Query Frame = 1
Query:  169 ETAFQEMVLDGEGPILVIFGAKWCGPCQLVEPITKKTAAQYEGKLKVIKVNTEQHEPLVGKYSIYGLPYLMVFENGEIIGTHEGAIGGKGMEKLLADAV 465
            + AFQ+ VL+ + P+L+ F A+WCGPC+ + P+  + A +YEGKLKV+K+N ++++    +Y I G+P LM+F++G++ GT  GA+G   + + +   +
Sbjct:   14 DAAFQQEVLESDTPVLLDFWAEWCGPCKSIAPVLDQLAGEYEGKLKVVKINIDENQQTPRQYGIRGIPTLMIFKDGKVAGTQIGAVGKAQLSQFIEKTI 112          
BLAST of mRNA_C-australica_Contig_1015.1.1 vs. uniprot
Match: A0A7W1WBT8_9CYAN (Thioredoxin n=5 Tax=Cylindrospermopsis TaxID=77021 RepID=A0A7W1WBT8_9CYAN)

HSP 1 Score: 95.5 bits (236), Expect = 1.500e-20
Identity = 40/97 (41.24%), Postives = 65/97 (67.01%), Query Frame = 1
Query:  169 ETAFQEMVLDGEGPILVIFGAKWCGPCQLVEPITKKTAAQYEGKLKVIKVNTEQHEPLVGKYSIYGLPYLMVFENGEIIGTHEGAIGGKGMEKLLAD 459
            + +F++ V+D   P+LV F A WCGPC++V P+ ++ A QY GKLKV+K+NT+++  +  KY I  +P L+VF+ GE +G H GA+    + K + +
Sbjct:    9 DASFKQEVIDSPIPVLVDFWAPWCGPCRMVAPVVEEIATQYAGKLKVVKINTDENPDVASKYGIRSIPTLIVFKGGEKVGLHVGAVPKSTLSKTVEE 105          
BLAST of mRNA_C-australica_Contig_1015.1.1 vs. uniprot
Match: A0A7H0EWJ6_9CYAN (Thioredoxin n=2 Tax=Cylindrospermopsis TaxID=77021 RepID=A0A7H0EWJ6_9CYAN)

HSP 1 Score: 95.5 bits (236), Expect = 1.500e-20
Identity = 40/97 (41.24%), Postives = 65/97 (67.01%), Query Frame = 1
Query:  169 ETAFQEMVLDGEGPILVIFGAKWCGPCQLVEPITKKTAAQYEGKLKVIKVNTEQHEPLVGKYSIYGLPYLMVFENGEIIGTHEGAIGGKGMEKLLAD 459
            +++F++ V+D + P+LV F A WCGPC++V P+  + A QY GKLKV+K+NT+++  +   Y I  +P L+VF+ GE +G H GA+    + K + D
Sbjct:    9 DSSFKQEVIDSDIPVLVDFWAPWCGPCRMVAPVVDEIATQYAGKLKVVKINTDENPKVASDYGIRSIPTLIVFKGGEKVGFHVGAVPKSTLSKTIED 105          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1015.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8H7_9STRA1.420e-2848.55Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
A0A0D2MZR6_9CHLO7.960e-2447.37Thioredoxin domain-containing protein n=1 Tax=Mono... [more]
A0A7S0BHJ8_9RHOD1.680e-2244.17Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7W5EJA0_9GAMM3.550e-2243.43Thioredoxin n=2 Tax=Luteibacter sp. Sphag1AF TaxID... [more]
A0A7J7INP8_9RHOD8.220e-2242.42Thioredoxin n=1 Tax=Cyanidiococcus yangmingshanens... [more]
A0A4R3YUN6_9GAMM2.580e-2142.42Thioredoxin n=1 Tax=Luteibacter rhizovicinus TaxID... [more]
M2XHT7_GALSU7.220e-2140.20Thioredoxin 1 n=1 Tax=Galdieria sulphuraria TaxID=... [more]
UPI001F033DDC1.080e-2038.38thioredoxin TrxA n=1 Tax=Luteibacter TaxID=242605 ... [more]
A0A7W1WBT8_9CYAN1.500e-2041.24Thioredoxin n=5 Tax=Cylindrospermopsis TaxID=77021... [more]
A0A7H0EWJ6_9CYAN1.500e-2041.24Thioredoxin n=2 Tax=Cylindrospermopsis TaxID=77021... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1015contigC-australica_Contig_1015:125..1792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog130081.XP_005706177.1
PFAMsThioredoxin
Model size1103
Max annot lvl2759|Eukaryota
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008047,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0030234,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044093,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0097237,GO:0098754,GO:0098772,GO:0098869,GO:1990748
Exons6
Evalue3.75e-24
EggNOG OGsCOG0526@1|root,KOG0910@2759|Eukaryota
Ec32 ortholog descriptionThioredoxin-like protein
Ec32 orthologEc-03_003300.1
Descriptionglycerol ether metabolic process
Cds size480
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1015.1.1prot_C-australica_Contig_1015.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1015 131..1175 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586749.5214987-UTR-C-australica_Contig_1015:124..1301682586749.5214987-UTR-C-australica_Contig_1015:124..130Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1015 125..130 +
1682586749.5930238-UTR-C-australica_Contig_1015:1175..17921682586749.5930238-UTR-C-australica_Contig_1015:1175..1792Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1015 1176..1792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586749.5312953-CDS-C-australica_Contig_1015:130..3131682586749.5312953-CDS-C-australica_Contig_1015:130..313Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1015 131..313 +
1682586749.5396016-CDS-C-australica_Contig_1015:384..4281682586749.5396016-CDS-C-australica_Contig_1015:384..428Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1015 385..428 +
1682586749.5527322-CDS-C-australica_Contig_1015:514..5481682586749.5527322-CDS-C-australica_Contig_1015:514..548Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1015 515..548 +
1682586749.5650218-CDS-C-australica_Contig_1015:631..6941682586749.5650218-CDS-C-australica_Contig_1015:631..694Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1015 632..694 +
1682586749.573702-CDS-C-australica_Contig_1015:817..8771682586749.573702-CDS-C-australica_Contig_1015:817..877Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1015 818..877 +
1682586749.5832598-CDS-C-australica_Contig_1015:1079..11751682586749.5832598-CDS-C-australica_Contig_1015:1079..1175Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1015 1080..1175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1015.1.1

>prot_C-australica_Contig_1015.1.1 ID=prot_C-australica_Contig_1015.1.1|Name=mRNA_C-australica_Contig_1015.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=160bp
MRAVWCFVCSLLVAQSAFAFLANGPMGLRHHPSIVTRSLRSMRMAAGVID
LPEGETAFQEMVLDGEGPILVIFGAKWCGPCQLVEPITKKTAAQYEGKLK
VIKVNTEQHEPLVGKYSIYGLPYLMVFENGEIIGTHEGAIGGKGMEKLLA
DAVPSLVES*
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mRNA from alignment at C-australica_Contig_1015:125..1792+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1015.1.1 ID=mRNA_C-australica_Contig_1015.1.1|Name=mRNA_C-australica_Contig_1015.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1668bp|location=Sequence derived from alignment at C-australica_Contig_1015:125..1792+ (Chrysoparadoxa australica CS_1217)
TACAAGATGCGCGCAGTCTGGTGTTTCGTCTGCTCACTGCTGGTAGCGCA AAGCGCCTTCGCCTTCCTGGCCAATGGACCCATGGGATTAAGACATCACC CGAGCATAGTAACTCGCTCCCTTCGATCTATGCGCATGGCGGCAGGGGTG ATTGACTTACCCGAGGGCGAGACTGCCTTCCAAGAGATGGCAAGATATCA CAAATCATTATAAGTTGGGCCACGCGCTGCCCTCTCGAAGCTAACCCCCC TCTCCCATAGGTGCTAGATGGAGAAGGGCCTATCCTGGTGATCTTTGGCG CCAAGTAAGATCAGTTCCTAAGTTGTAACATGAACCCCAGCCCGCCCCTG ACCCGAGATCACGCTCCCTCCCCACCGCCACTACTTCCAGGTGGTGCGGC CCTTGCCAATTGGTGGAGCCAATTGTCAGTAGTCAAAGAATGCCCTGAAC CTGCTTTCTCCCCTCCACTTGCTCAATCTCTTCGCTGACTTCCGTTTCTT CCCACAGACAAAGAAGACAGCAGCCCAATATGAGGGCAAGCTGAAGGTGA TCAAGGTCAACACAGAGCAGGTGACTGATGTGCCCAATTTAATCGATCAT CCCCAACAGTCTCAGCGCGAAAAGCTGTCTGACTATATCGCACAATTACG TCACCTAACATTTTTCGCACCCTTGACACACTCACTCATGAAGCACGAGC CATTGGTGGGGAAATATAGCATATACGGGCTGCCATACTTGATGGTCTTT GAGGTACGAACTCATCATGCGCGGCTCCAGACATGACGTCCTCTTCCTGC AAAGAGTTGCTCCCTGTTTTTGTTATCTCACATGCAAAGAGACTTCTCCA GTGACCCCCTAACGTGAGAAGTTGATTCACTCAATGATTCTATCCCACGT TTTTTATTGGTCAATTGACTCGTCCACTCACTTACCTTACACCTTCTATG CACAGAACGGTGAAATCATTGGCACACATGAGGGGGCTATTGGTGGCAAG GGCATGGAGAAGCTGCTGGCAGATGCTGTGCCAAGCTTGGTGGAGAGCTA GCTGTTCGAAAAACATACCTGTTTTGCTTTGGCTGAGCTGATTTGATTAG GTGTGTTTAGCCATTTTATTCTCATTGCGAGGAGGAGCTAAGTTACCAGA CGTATCATAGCACTTAAGATAGTACCATAGCCCATGGTATAAGATACGGA AGCCGTGAAAAGATGTCATTTTTCTGAACGAGGGGGGAGCAACCTACTTC ATGTGCTGCACTCTCTTGAGATCTAGTGGTTACAGGTATATCAAAGATCC TGATGTATAGAATCTTGCCAACCAGGGGTCTCTGAAGGCCCTGGGCGTAG AGATCATTGAGGGCAAGGGCTCCCTGAGCGATGCCCATAGCGTGAAAGGT GATCACAAGCAAAGACCTTCACCGCCAAGACATCATCCTTGCACCAGGTC CCATTCCCTTTGTGCCTCCTAGAAGACAACAGCCTTCACAACTGTCAGAT GGACTGCCTGACTGGTTAAGTCCCCCCCCAACGTCGACTGCATTGGTGAT GCCAACGGCAAGATGATGCTTGTCCATGCTGCCTCAACGCAGAGCATCAG AGCACATTAGTGCTATTGAGAACAGTTCCTCATGCTGTGGAAAAGTATGG TTATAATTCCTCCATTCT
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Coding sequence (CDS) from alignment at C-australica_Contig_1015:125..1792+

>mRNA_C-australica_Contig_1015.1.1 ID=mRNA_C-australica_Contig_1015.1.1|Name=mRNA_C-australica_Contig_1015.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=480bp|location=Sequence derived from alignment at C-australica_Contig_1015:125..1792+ (Chrysoparadoxa australica CS_1217)
ATGCGCGCAGTCTGGTGTTTCGTCTGCTCACTGCTGGTAGCGCAAAGCGC
CTTCGCCTTCCTGGCCAATGGACCCATGGGATTAAGACATCACCCGAGCA
TAGTAACTCGCTCCCTTCGATCTATGCGCATGGCGGCAGGGGTGATTGAC
TTACCCGAGGGCGAGACTGCCTTCCAAGAGATGGTGCTAGATGGAGAAGG
GCCTATCCTGGTGATCTTTGGCGCCAAGTGGTGCGGCCCTTGCCAATTGG
TGGAGCCAATTACAAAGAAGACAGCAGCCCAATATGAGGGCAAGCTGAAG
GTGATCAAGGTCAACACAGAGCAGCACGAGCCATTGGTGGGGAAATATAG
CATATACGGGCTGCCATACTTGATGGTCTTTGAGAACGGTGAAATCATTG
GCACACATGAGGGGGCTATTGGTGGCAAGGGCATGGAGAAGCTGCTGGCA
GATGCTGTGCCAAGCTTGGTGGAGAGCTAG
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