mRNA_C-australica_Contig_1015.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1015.1.1 vs. uniprot
Match: A0A835Z8H7_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H7_9STRA) HSP 1 Score: 119 bits (297), Expect = 1.420e-28 Identity = 67/138 (48.55%), Postives = 88/138 (63.77%), Query Frame = 1 Query: 115 RSLRSMRMAAGVIDLPEGETA----FQEMVLDGEGPILVIFGAKW----------CGPCQLVEPITKKTAAQYEGKLK---VIKVNTEQHEPLVGKYSIYGLPYLMVFENGEIIGTHEGAIGGKGMEKLLADAVPSLV 477 R+ S A VIDL + + A F E+VL+ + P+LV F A CGPC+L+EP+ KKTA +YEGK+K V+KVNTE H+ LVG+Y+IYGLP L VF +G++ G HEGA G MEKLL A+P +V Sbjct: 38 RAACSQLRMAQVIDLDDVDVAKGATFSELVLESDTPVLVDFYANSSLRLFVDVCRCGPCKLIEPLVKKTAEKYEGKMKAEQVVKVNTEVHKELVGQYNIYGLPLLAVFVDGQVKGVHEGAAGAAQMEKLLKGALPEMV 175
BLAST of mRNA_C-australica_Contig_1015.1.1 vs. uniprot
Match: A0A0D2MZR6_9CHLO (Thioredoxin domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MZR6_9CHLO) HSP 1 Score: 104 bits (260), Expect = 7.960e-24 Identity = 54/114 (47.37%), Postives = 79/114 (69.30%), Query Frame = 1 Query: 142 AGVIDLPEGETAFQEMVLDGEGPILVIFGAKWCGPCQLVEPITKKTAAQYEGKLKVIKVNTEQHEPLVGKYSIYGLPYLMVFENGEII-GTH-EGAIGGKGMEKLLADAVPSLV 477 A V+++ EGE A+ E VL + P+LV F A WCGPC+LV P+ + +YEG+LKV+KVN + LV KY +YGLP LMVF++G+++ G+H EGA+G + K + VP++V Sbjct: 12 ARVVEI-EGEEAWNEHVLKSDKPVLVDFWAVWCGPCKLVAPLMEWAEKEYEGRLKVVKVNHTPNPELVAKYKVYGLPTLMVFKDGQLVEGSHREGAVGKSILVKYIDQHVPAVV 124
BLAST of mRNA_C-australica_Contig_1015.1.1 vs. uniprot
Match: A0A7S0BHJ8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BHJ8_9RHOD) HSP 1 Score: 103 bits (256), Expect = 1.680e-22 Identity = 53/120 (44.17%), Postives = 79/120 (65.83%), Query Frame = 1 Query: 115 RSLRSMRMAAGVIDLPEGETAFQEMVLDGEGPILVIFGAKWCGPCQLVEPITKKTAAQYEGKLKVIKVNTEQHEPLVGKYSIYGLPYLMVFENGEIIGTHEGAIGGKGMEKLLADAVPSL 474 RS SM+ + V + +FQ V++ + P+LV F A WCGPC+L+ P+ A++YEGKL+V+K++TE++ V +YSI+GLP L +F+NGE I EGAIG + + LL D +P L Sbjct: 74 RSTLSMKAVSEV-----SKDSFQGEVMESDLPVLVDFYAAWCGPCKLIAPVMDWCASEYEGKLRVVKIDTEKYPNFVREYSIHGLPTLAIFKNGENISQIEGAIGKQKVLDLLKDNLPEL 188
BLAST of mRNA_C-australica_Contig_1015.1.1 vs. uniprot
Match: A0A7W5EJA0_9GAMM (Thioredoxin n=2 Tax=Luteibacter sp. Sphag1AF TaxID=2587031 RepID=A0A7W5EJA0_9GAMM) HSP 1 Score: 99.8 bits (247), Expect = 3.550e-22 Identity = 43/99 (43.43%), Postives = 69/99 (69.70%), Query Frame = 1 Query: 169 ETAFQEMVLDGEGPILVIFGAKWCGPCQLVEPITKKTAAQYEGKLKVIKVNTEQHEPLVGKYSIYGLPYLMVFENGEIIGTHEGAIGGKGMEKLLADAV 465 + AFQ VLD E P+L+ F A+WCGPC+ + PI + AA+Y+GKLKV+K+N +Q++ ++ + G+P LMVF+ G++ GT GA+G +++L+ V Sbjct: 10 DEAFQRHVLDSETPVLLDFWAEWCGPCKSIAPILDELAAEYQGKLKVVKINIDQNQQTPRQFGVRGIPTLMVFKGGKVEGTQIGAVGKGALQELIKKVV 108
BLAST of mRNA_C-australica_Contig_1015.1.1 vs. uniprot
Match: A0A7J7INP8_9RHOD (Thioredoxin n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7INP8_9RHOD) HSP 1 Score: 99.4 bits (246), Expect = 8.220e-22 Identity = 42/99 (42.42%), Postives = 67/99 (67.68%), Query Frame = 1 Query: 178 FQEMVLDGEGPILVIFGAKWCGPCQLVEPITKKTAAQYEGKLKVIKVNTEQHEPLVGKYSIYGLPYLMVFENGEIIGTHEGAIGGKGMEKLLADAVPSL 474 F+ VL E P+LV F A+WCGPC+L+ P+ AA+Y GK+K+ K++TEQ+ + +Y I GLP L++ NG+++ HEGAIG + + L++ +P + Sbjct: 26 FETEVLQAETPVLVDFYAEWCGPCKLIAPLIDWAAAEYSGKVKIFKLDTEQNPKFLPRYGISGLPTLILLRNGDVVAQHEGAIGKSALVQFLSENLPEI 124
BLAST of mRNA_C-australica_Contig_1015.1.1 vs. uniprot
Match: A0A4R3YUN6_9GAMM (Thioredoxin n=1 Tax=Luteibacter rhizovicinus TaxID=242606 RepID=A0A4R3YUN6_9GAMM) HSP 1 Score: 97.4 bits (241), Expect = 2.580e-21 Identity = 42/99 (42.42%), Postives = 68/99 (68.69%), Query Frame = 1 Query: 169 ETAFQEMVLDGEGPILVIFGAKWCGPCQLVEPITKKTAAQYEGKLKVIKVNTEQHEPLVGKYSIYGLPYLMVFENGEIIGTHEGAIGGKGMEKLLADAV 465 + AFQ VL+ + P+L+ F A+WCGPC+ + PI + A QYEGKLKV+K+N +Q++ +Y + G+P LMVF+NG++ T GA+G + +++ A+ Sbjct: 10 DEAFQRHVLESDTPVLLDFWAEWCGPCKSIAPILDELATQYEGKLKVVKINIDQNQKTPREYGVRGIPTLMVFKNGKVEATQIGAVGKGQLTQMIDKAI 108
BLAST of mRNA_C-australica_Contig_1015.1.1 vs. uniprot
Match: M2XHT7_GALSU (Thioredoxin 1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XHT7_GALSU) HSP 1 Score: 98.2 bits (243), Expect = 7.220e-21 Identity = 41/102 (40.20%), Postives = 71/102 (69.61%), Query Frame = 1 Query: 169 ETAFQEMVLDGEGPILVIFGAKWCGPCQLVEPITKKTAAQYEGKLKVIKVNTEQHEPLVGKYSIYGLPYLMVFENGEIIGTHEGAIGGKGMEKLLADAVPSL 474 +T F++ VL + P+LV F A WCGPC+LV P+ ++Y GKLKV+K++T+++ V +Y + GLP L++F++G ++ + EGA+G KG+++ + +P L Sbjct: 66 DTHFEQQVLQSQIPVLVDFHADWCGPCKLVTPLLDWLVSEYGGKLKVVKIDTDKNPRYVKQYDVRGLPTLIIFQDGRLVASSEGALGKKGIQQYIEKHLPQL 167
BLAST of mRNA_C-australica_Contig_1015.1.1 vs. uniprot
Match: UPI001F033DDC (thioredoxin TrxA n=1 Tax=Luteibacter TaxID=242605 RepID=UPI001F033DDC) HSP 1 Score: 95.9 bits (237), Expect = 1.080e-20 Identity = 38/99 (38.38%), Postives = 68/99 (68.69%), Query Frame = 1 Query: 169 ETAFQEMVLDGEGPILVIFGAKWCGPCQLVEPITKKTAAQYEGKLKVIKVNTEQHEPLVGKYSIYGLPYLMVFENGEIIGTHEGAIGGKGMEKLLADAV 465 + AFQ+ VL+ + P+L+ F A+WCGPC+ + P+ + A +YEGKLKV+K+N ++++ +Y I G+P LM+F++G++ GT GA+G + + + + Sbjct: 14 DAAFQQEVLESDTPVLLDFWAEWCGPCKSIAPVLDQLAGEYEGKLKVVKINIDENQQTPRQYGIRGIPTLMIFKDGKVAGTQIGAVGKAQLSQFIEKTI 112
BLAST of mRNA_C-australica_Contig_1015.1.1 vs. uniprot
Match: A0A7W1WBT8_9CYAN (Thioredoxin n=5 Tax=Cylindrospermopsis TaxID=77021 RepID=A0A7W1WBT8_9CYAN) HSP 1 Score: 95.5 bits (236), Expect = 1.500e-20 Identity = 40/97 (41.24%), Postives = 65/97 (67.01%), Query Frame = 1 Query: 169 ETAFQEMVLDGEGPILVIFGAKWCGPCQLVEPITKKTAAQYEGKLKVIKVNTEQHEPLVGKYSIYGLPYLMVFENGEIIGTHEGAIGGKGMEKLLAD 459 + +F++ V+D P+LV F A WCGPC++V P+ ++ A QY GKLKV+K+NT+++ + KY I +P L+VF+ GE +G H GA+ + K + + Sbjct: 9 DASFKQEVIDSPIPVLVDFWAPWCGPCRMVAPVVEEIATQYAGKLKVVKINTDENPDVASKYGIRSIPTLIVFKGGEKVGLHVGAVPKSTLSKTVEE 105
BLAST of mRNA_C-australica_Contig_1015.1.1 vs. uniprot
Match: A0A7H0EWJ6_9CYAN (Thioredoxin n=2 Tax=Cylindrospermopsis TaxID=77021 RepID=A0A7H0EWJ6_9CYAN) HSP 1 Score: 95.5 bits (236), Expect = 1.500e-20 Identity = 40/97 (41.24%), Postives = 65/97 (67.01%), Query Frame = 1 Query: 169 ETAFQEMVLDGEGPILVIFGAKWCGPCQLVEPITKKTAAQYEGKLKVIKVNTEQHEPLVGKYSIYGLPYLMVFENGEIIGTHEGAIGGKGMEKLLAD 459 +++F++ V+D + P+LV F A WCGPC++V P+ + A QY GKLKV+K+NT+++ + Y I +P L+VF+ GE +G H GA+ + K + D Sbjct: 9 DSSFKQEVIDSDIPVLVDFWAPWCGPCRMVAPVVDEIATQYAGKLKVVKINTDENPKVASDYGIRSIPTLIVFKGGEKVGFHVGAVPKSTLSKTIED 105 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1015.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1015.1.1 >prot_C-australica_Contig_1015.1.1 ID=prot_C-australica_Contig_1015.1.1|Name=mRNA_C-australica_Contig_1015.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=160bp MRAVWCFVCSLLVAQSAFAFLANGPMGLRHHPSIVTRSLRSMRMAAGVIDback to top mRNA from alignment at C-australica_Contig_1015:125..1792+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1015.1.1 ID=mRNA_C-australica_Contig_1015.1.1|Name=mRNA_C-australica_Contig_1015.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1668bp|location=Sequence derived from alignment at C-australica_Contig_1015:125..1792+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1015:125..1792+ >mRNA_C-australica_Contig_1015.1.1 ID=mRNA_C-australica_Contig_1015.1.1|Name=mRNA_C-australica_Contig_1015.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=480bp|location=Sequence derived from alignment at C-australica_Contig_1015:125..1792+ (Chrysoparadoxa australica CS_1217)back to top |