mRNA_C-australica_Contig_10146.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10146.1.1
Unique NamemRNA_C-australica_Contig_10146.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_10146.1.1 vs. uniprot
Match: E0XV88_9RHOB (Uncharacterized protein n=1 Tax=uncultured Rhodobacterales bacterium HF4000_03E16 TaxID=710785 RepID=E0XV88_9RHOB)

HSP 1 Score: 59.7 bits (143), Expect = 2.830e-10
Identity = 31/44 (70.45%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   10 VVGRGGLEPPTSRLSGVRSNHLSYRP---------RQAGRPDVL 114
            +VGRGGLEPPTSRLSGVRSNHLSYRP         R+AG P VL
Sbjct:   58 LVGRGGLEPPTSRLSGVRSNHLSYRPKLILPAGKYRRAGGPLVL 101
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BLAST of mRNA_C-australica_Contig_10146.1.1 vs. uniprot
Match: A0A2H1Q3R2_XANCH (Uncharacterized protein n=1 Tax=Xanthomonas campestris pv. phaseoli TaxID=317013 RepID=A0A2H1Q3R2_XANCH)

HSP 1 Score: 53.9 bits (128), Expect = 3.040e-8
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:   10 VVGRGGLEPPTSRLSGVRSNHLSYRPR 90
            VVG GGLEPPTS LSGVRSNHLSYRP+
Sbjct:    7 VVGLGGLEPPTSPLSGVRSNHLSYRPK 33
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BLAST of mRNA_C-australica_Contig_10146.1.1 vs. uniprot
Match: H6SIE5_PARPM (Uncharacterized protein (Fragment) n=2 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SIE5_PARPM)

HSP 1 Score: 54.3 bits (129), Expect = 3.630e-8
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    7 MVVGRGGLEPPTSRLSGVRSNHLSYRPRQAGRPDVLLKRYGDG 135
            ++VG G LE PTSRLSGVRSNHLSYRP+   +     KR+ DG
Sbjct:   40 LLVGLGRLERPTSRLSGVRSNHLSYRPKALPKRHKRRKRWEDG 82
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BLAST of mRNA_C-australica_Contig_10146.1.1 vs. uniprot
Match: A0A0C6FG27_9HYPH (Uncharacterized protein n=1 Tax=Methylobacterium aquaticum TaxID=270351 RepID=A0A0C6FG27_9HYPH)

HSP 1 Score: 51.6 bits (122), Expect = 2.370e-7
Identity = 29/49 (59.18%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:   10 VVGRGGLEPPTSRLSGVRSNHLSYRPRQAGRPDVLL--KRYGDGLVRLI 150
            +VG G LE PTS LSGVRSNHLSYRP    R  V +  KR  DG  RL+
Sbjct:   28 MVGLGRLERPTSPLSGVRSNHLSYRPVAGSRQRVRMMRKRNEDGASRLM 76
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BLAST of mRNA_C-australica_Contig_10146.1.1 vs. uniprot
Match: A0A653VLB7_9BACI (Uncharacterized protein n=2 Tax=Bacillus altitudinis complex TaxID=1792192 RepID=A0A653VLB7_9BACI)

HSP 1 Score: 51.6 bits (122), Expect = 4.220e-7
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:    1 RRMVVGRGGLEPPTSRLSGVRSNHLSYRP 87
            R+++VG  GLEPPTSRLSGVRSN LSYRP
Sbjct:   25 RKVMVGLSGLEPPTSRLSGVRSNQLSYRP 53
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BLAST of mRNA_C-australica_Contig_10146.1.1 vs. uniprot
Match: UPI001AFAB205 (Uncharacterized protein n=1 Tax=Citrobacter freundii TaxID=546 RepID=UPI001AFAB205)

HSP 1 Score: 50.1 bits (118), Expect = 5.180e-7
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:    1 RRMVVGRGGLEPPTSRLSGVRSNHLSYRPRQ 93
            R+ +VG  GLEPPTS LSGVRSNHLSY+P +
Sbjct:   10 RKNLVGLSGLEPPTSPLSGVRSNHLSYKPAE 40
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BLAST of mRNA_C-australica_Contig_10146.1.1 vs. uniprot
Match: A0A653L570_9GAMM (Uncharacterized protein n=2 Tax=Aeromonas TaxID=642 RepID=A0A653L570_9GAMM)

HSP 1 Score: 50.8 bits (120), Expect = 5.980e-7
Identity = 23/26 (88.46%), Postives = 23/26 (88.46%), Query Frame = 1 
Query:   10 VVGRGGLEPPTSRLSGVRSNHLSYRP 87
            VVG  GLEPPTS LSGVRSNHLSYRP
Sbjct:   50 VVGLSGLEPPTSPLSGVRSNHLSYRP 75
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BLAST of mRNA_C-australica_Contig_10146.1.1 vs. uniprot
Match: Q2G2J6_STAA8 (Uncharacterized protein n=1 Tax=Staphylococcus aureus (strain NCTC 8325 / PS 47) TaxID=93061 RepID=Q2G2J6_STAA8)

HSP 1 Score: 49.3 bits (116), Expect = 1.220e-6
Identity = 22/26 (84.62%), Postives = 23/26 (88.46%), Query Frame = 1 
Query:   10 VVGRGGLEPPTSRLSGVRSNHLSYRP 87
            +VG  GLEPPTSRLSGVRSN LSYRP
Sbjct:    1 MVGLSGLEPPTSRLSGVRSNQLSYRP 26
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BLAST of mRNA_C-australica_Contig_10146.1.1 vs. uniprot
Match: A0A382IZR8_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382IZR8_9ZZZZ)

HSP 1 Score: 50.4 bits (119), Expect = 1.410e-6
Identity = 22/26 (84.62%), Postives = 24/26 (92.31%), Query Frame = 1 
Query:   10 VVGRGGLEPPTSRLSGVRSNHLSYRP 87
            +VG GG+EPPTSRLSGVRSN LSYRP
Sbjct:   85 LVGLGGVEPPTSRLSGVRSNQLSYRP 110
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BLAST of mRNA_C-australica_Contig_10146.1.1 vs. uniprot
Match: W1IX48_9GAMM (Uncharacterized protein n=1 Tax=Xenorhabdus cabanillasii JM26 TaxID=1427517 RepID=W1IX48_9GAMM)

HSP 1 Score: 48.5 bits (114), Expect = 1.620e-6
Identity = 21/26 (80.77%), Postives = 23/26 (88.46%), Query Frame = 1 
Query:   10 VVGRGGLEPPTSRLSGVRSNHLSYRP 87
            +VG  GLEPPTS LSGVRSNHLSY+P
Sbjct:    1 MVGLSGLEPPTSPLSGVRSNHLSYKP 26
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10146.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E0XV88_9RHOB2.830e-1070.45Uncharacterized protein n=1 Tax=uncultured Rhodoba... [more]
A0A2H1Q3R2_XANCH3.040e-888.89Uncharacterized protein n=1 Tax=Xanthomonas campes... [more]
H6SIE5_PARPM3.630e-860.47Uncharacterized protein (Fragment) n=2 Tax=Pararho... [more]
A0A0C6FG27_9HYPH2.370e-759.18Uncharacterized protein n=1 Tax=Methylobacterium a... [more]
A0A653VLB7_9BACI4.220e-779.31Uncharacterized protein n=2 Tax=Bacillus altitudin... [more]
UPI001AFAB2055.180e-770.97Uncharacterized protein n=1 Tax=Citrobacter freund... [more]
A0A653L570_9GAMM5.980e-788.46Uncharacterized protein n=2 Tax=Aeromonas TaxID=64... [more]
Q2G2J6_STAA81.220e-684.62Uncharacterized protein n=1 Tax=Staphylococcus aur... [more]
A0A382IZR8_9ZZZZ1.410e-684.62Uncharacterized protein n=1 Tax=marine metagenome ... [more]
W1IX48_9GAMM1.620e-680.77Uncharacterized protein n=1 Tax=Xenorhabdus cabani... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10146contigC-australica_Contig_10146:77..229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1121935.AQXX01000025_gene1583
Model size153
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue7.84e-09
EggNOG OGs2EMPC@1|root,33FBT@2|Bacteria,1QNQV@1224|Proteobacteria,1SI44@1236|Gammaproteobacteria
Cds size147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586749.3824015-CDS-C-australica_Contig_10146:76..2231682586749.3824015-CDS-C-australica_Contig_10146:76..223Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10146 77..223 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586749.3951426-UTR-C-australica_Contig_10146:223..2291682586749.3951426-UTR-C-australica_Contig_10146:223..229Chrysoparadoxa australica CS_1217UTRC-australica_Contig_10146 224..229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10146.1.1prot_C-australica_Contig_10146.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10146 77..223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10146.1.1

>prot_C-australica_Contig_10146.1.1 ID=prot_C-australica_Contig_10146.1.1|Name=mRNA_C-australica_Contig_10146.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=49bp
MVVGRGGLEPPTSRLSGVRSNHLSYRPRQAGRPDVLLKRYGDGLVRLI*
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mRNA from alignment at C-australica_Contig_10146:77..229-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10146.1.1 ID=mRNA_C-australica_Contig_10146.1.1|Name=mRNA_C-australica_Contig_10146.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=153bp|location=Sequence derived from alignment at C-australica_Contig_10146:77..229- (Chrysoparadoxa australica CS_1217)
CGAAGGATGGTGGTGGGTCGAGGAGGACTTGAACCTCCGACCTCACGCTT
ATCAGGCGTGCGCTCTAACCACCTGAGCTACCGACCCAGACAGGCCGGCA
GGCCTGATGTATTACTGAAGAGATATGGGGACGGCCTGGTCCGTTTGATA
TAG
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Coding sequence (CDS) from alignment at C-australica_Contig_10146:77..229-

>mRNA_C-australica_Contig_10146.1.1 ID=mRNA_C-australica_Contig_10146.1.1|Name=mRNA_C-australica_Contig_10146.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=147bp|location=Sequence derived from alignment at C-australica_Contig_10146:77..229- (Chrysoparadoxa australica CS_1217)
ATGGTGGTGGGTCGAGGAGGACTTGAACCTCCGACCTCACGCTTATCAGG
CGTGCGCTCTAACCACCTGAGCTACCGACCCAGACAGGCCGGCAGGCCTG
ATGTATTACTGAAGAGATATGGGGACGGCCTGGTCCGTTTGATATAG
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