mRNA_C-australica_Contig_1014.5.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1014.5.1
Unique NamemRNA_C-australica_Contig_1014.5.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_1014.5.1 vs. uniprot
Match: D7FRA9_ECTSI (Pyr_redox_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRA9_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 2.490e-33
Identity = 87/236 (36.86%), Postives = 118/236 (50.00%), Query Frame = 1 
Query:  163 RRRSSILAGPLLTSLKEIVEDSFQEQLHFDHLCLGGGIAAARWCSHISKAETNSTAAVITAYPQGMFPYSRDAFIRDVVMSSPPHCSGPPPDWYQDQGVTVLHSCQAVRADLDGAFLAVNRVAHDGKGNIVYESSIKISYGKLVIATGACPRSFPAPVPTHNPEDDWATAKLMQAACFLTRHPDLSTGNVGTDGAASLELRTPKEYGFGSVHYIRDAGDAVKLAAAASRTEEDGQE 870
            RRRSS LA  +L +++E  E+ F+E L +D + LGGG+AA  W    S  E +                                     P+WY+  G+T+L  CQAV  DLD  FL V RV     G +V+  +IK+ YG+L+IATGA PR     + + +       +K +Q +C  TRHPD+       DG+  L    P  +GFGSVHY+RD GD VKL  A  R E DGQ+
Sbjct:    6 RRRSSALAAQVLEAIRETDEEIFEEILQYDLVALGGGVAAGYW-GEGSGGEAHD------------------------------------PEWYKTNGITILSRCQAVSVDLDQKFLKVKRVTASN-GELVFGDTIKVVYGRLLIATGARPRKIADEIKSLD-----NISKGLQGSCCCTRHPDV-------DGSP-LACTFPDRFGFGSVHYLRDFGDTVKLVHAMGRVEADGQD 190
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BLAST of mRNA_C-australica_Contig_1014.5.1 vs. uniprot
Match: A0A7S4A4F3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A4F3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.960e-7
Identity = 63/241 (26.14%), Postives = 93/241 (38.59%), Query Frame = 1 
Query:  256 LCLGGGIAAARWCSHISKA---------ETNST-AAVITAYPQGMFPYSRDAFIRDVVMSSPPHCSGPPPDWYQDQGVTVLHSCQAVRADLDGAFLAVNRVAHDGKGNIVYESSIKISYGKLVIATGACPRSFPAPVPTHNPEDDWATAKLMQAACFL--TRHPDLSTGNVGTDGAASLE------------------------LRTPKEYGFGSVHYIRDAGDAVKLAAAASRTEEDGQE 870
            L +GGG+AAA    H+++A         ET+     +++AYP G+ PY R    +D +  +    +  P     D GV +       + D D   +         +  I YE        KL+IATGA                    AK++    +L   +H D+       +G   +                         L+  K  GFGSVHY+RD GDA K++ A S  E DGQE
Sbjct:    8 LVVGGGVAAA----HVAQALCERAEELPETDKALCTILSAYPAGISPYDRSRISKDALDCTRLDATSFPSLELPD-GVALWSGKVVTKCDPDAKKVTYRDAITGDEDEITYE--------KLIIATGA-------------------RAKVLDDQPYLWQDKHSDVVDNGSIEEGGEDIACAPAXXXXXXXXXXXPAPRIRPWCLQADKNCGFGSVHYLRDIGDAAKVSEAVSMKEADGQE 216
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1014.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRA9_ECTSI2.490e-3336.86Pyr_redox_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A7S4A4F3_9STRA2.960e-726.14Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1014contigC-australica_Contig_1014:6976..8466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FRA9
Preferred nameMDAR1
PFAMsPyr_redox_2
Model size873
Max annot lvl2759|Eukaryota
KEGG koko:K08232
KEGG ReactionR00095
KEGG Pathwayko00053,ko01100,map00053,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001101,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005777,GO:0005778,GO:0005829,GO:0006950,GO:0006970,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009266,GO:0009409,GO:0009414,GO:0009415,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009608,GO:0009610,GO:0009620,GO:0009628,GO:0009636,GO:0009651,GO:0009719,GO:0009725,GO:0009753,GO:0009941,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0010319,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0016656,GO:0016999,GO:0017001,GO:0017076,GO:0017144,GO:0030554,GO:0031090,GO:0031903,GO:0031967,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042221,GO:0042579,GO:0042737,GO:0042743,GO:0042744,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043900,GO:0043903,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0050789,GO:0050896,GO:0051186,GO:0051187,GO:0051704,GO:0051707,GO:0051716,GO:0055114,GO:0065007,GO:0070887,GO:0072593,GO:0097159,GO:0097237,GO:0097367,GO:0098588,GO:0098754,GO:0098805,GO:0098869,GO:1901265,GO:1901363,GO:1901700,GO:1990748
Exons10
Evalue1.55e-34
EggNOG OGsCOG0446@1|root,KOG1336@2759|Eukaryota
Ec32 ortholog descriptionMonodehydroascorbate reductase-like
Ec32 orthologEc-26_002470.1
EC1.6.5.4
Descriptionmonodehydroascorbate reductase (NADH) activity
Cds size771
COG categoryJ
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1014.5.1prot_C-australica_Contig_1014.5.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1014 7135..8466 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586748.830443-UTR-C-australica_Contig_1014:6975..70651682586748.830443-UTR-C-australica_Contig_1014:6975..7065Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1014 6976..7065 +
1682586748.8429298-UTR-C-australica_Contig_1014:7122..71341682586748.8429298-UTR-C-australica_Contig_1014:7122..7134Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1014 7123..7134 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586748.8521829-CDS-C-australica_Contig_1014:7134..72021682586748.8521829-CDS-C-australica_Contig_1014:7134..7202Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 7135..7202 +
1682586748.8618789-CDS-C-australica_Contig_1014:7272..73211682586748.8618789-CDS-C-australica_Contig_1014:7272..7321Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 7273..7321 +
1682586748.871073-CDS-C-australica_Contig_1014:7396..75311682586748.871073-CDS-C-australica_Contig_1014:7396..7531Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 7397..7531 +
1682586748.8808692-CDS-C-australica_Contig_1014:7597..76791682586748.8808692-CDS-C-australica_Contig_1014:7597..7679Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 7598..7679 +
1682586748.8917336-CDS-C-australica_Contig_1014:7743..78351682586748.8917336-CDS-C-australica_Contig_1014:7743..7835Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 7744..7835 +
1682586748.9037497-CDS-C-australica_Contig_1014:7897..79731682586748.9037497-CDS-C-australica_Contig_1014:7897..7973Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 7898..7973 +
1682586748.9116967-CDS-C-australica_Contig_1014:8046..81661682586748.9116967-CDS-C-australica_Contig_1014:8046..8166Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 8047..8166 +
1682586748.919609-CDS-C-australica_Contig_1014:8239..83311682586748.919609-CDS-C-australica_Contig_1014:8239..8331Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 8240..8331 +
1682586748.9319012-CDS-C-australica_Contig_1014:8409..84661682586748.9319012-CDS-C-australica_Contig_1014:8409..8466Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 8410..8466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1014.5.1

>prot_C-australica_Contig_1014.5.1 ID=prot_C-australica_Contig_1014.5.1|Name=mRNA_C-australica_Contig_1014.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=257bp
MGEMANLHYPEDLPVGQRTVRRRSSILAGPLLTSLKEIVEDSFQEQLHFD
HLCLGGGIAAARWCSHISKAETNSTAAVITAYPQGMFPYSRDAFIRDVVM
SSPPHCSGPPPDWYQDQGVTVLHSCQAVRADLDGAFLAVNRVAHDGKGNI
VYESSIKISYGKLVIATGACPRSFPAPVPTHNPEDDWATAKLMQAACFLT
RHPDLSTGNVGTDGAASLELRTPKEYGFGSVHYIRDAGDAVKLAAAASRT
EEDGQEP
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mRNA from alignment at C-australica_Contig_1014:6976..8466+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1014.5.1 ID=mRNA_C-australica_Contig_1014.5.1|Name=mRNA_C-australica_Contig_1014.5.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1491bp|location=Sequence derived from alignment at C-australica_Contig_1014:6976..8466+ (Chrysoparadoxa australica CS_1217)
TTTTGATTTCCTTTTGTAACGTGTGTTGGCAGGTCTGAGCTCTAAAGAGT
TGCTTACTGTACCAGGCAGTCCGTTCTCCACTCGTGCACGGTAAGCAAAC
ACCCCAAACGAAGATGATGGAAATCCTTATGCTCACCCAGCACCCAGGCT
TGGCATAAGATGGGTGAGATGGCAAACCTGCACTACCCTGAGGATCTCCC
TGTCGGCCAGAGGACAGTGAGGCGAAGGTGAGCGCACTCTCCCCGCTCTC
TGCTCTCCCAAGGTCAAACTAACAGCACCAGTTCTTCCCCTGCACAGGTC
AAGTATCCTGGCGGGGCCGCTCCTCACGTCCCTCAAGGAGATAGTGGTGA
GGGATGAGCCTCCCAGTTTCTGTTTGTCGCTCTTCCTTCGCTCAACAATG
AGCCCCTGCCGTTCACTTCAGGAGGACAGCTTCCAAGAGCAGCTTCATTT
TGACCACTTGTGCCTTGGTGGCGGAATAGCTGCAGCGCGATGGTGCAGTC
ACATTTCCAAGGCAGAGACAAATAGCACGGCAGCGGTCATTACTGCGTAC
CCGCAGGTTCATGATGAAGCTAGAAGTACTATCGTATCATTATTTCCTTC
CTTACGCCTGCTAGCACCTCAGGGCATGTTCCCTTACAGCCGTGACGCTT
TCATTCGTGATGTGGTCATGTCGTCACCACCTCACTGCAGTGGGCCACCT
CCAGGTGACCAACCAGTACCGGCACTCCAGGCACACTCGTTCTCACAAAC
CTCCTCAACCTGCTTCAGATTGGTACCAAGACCAAGGTGTGACAGTGCTG
CACAGCTGCCAAGCAGTCAGGGCTGACTTGGACGGAGCCTTCCTTGCCGT
CAACCGAGTGGTAGAGAACCAAGCAAGAACAATACAGCTGACCAAACAAG
ACTAATAATTCCCTCCCGCTAGGCGCACGATGGTAAAGGCAACATAGTGT
ATGAGTCCTCCATAAAGATCAGCTACGGCAAGCTGGTGATTGCCACAGGT
AACTGAATTAAAAAAATCAAATCAGTCAAGCCCTGCTGTTCTGATGCGTG
CGTTTGCACCTTTTGCGCTAGGTGCCTGTCCAAGAAGCTTCCCTGCACCT
GTTCCGACCCATAACCCAGAAGATGACTGGGCAACAGCCAAGCTCATGCA
AGCAGCATGCTTCCTCACGCGGCACCCAGATCTAAGCACAGGCAAGGGCC
AGACAGTAGGAGGGCCTAGCTCTGAAGCTAGAGGCCAGCTCTGACGGTCA
GAGCCCCCCAGCAGGCAACGTGGGCACCGATGGAGCAGCCAGCTTGGAGC
TGCGAACACCCAAGGAGTACGGCTTTGGGTCAGTGCACTACATCAGGGAT
GCGGGGGTAAAGCATCGTAATGTGATAATCCTGGAGATGTGTGGGAGCCA
ACCCCTCCAATTCATTTGCTACCCCACCCGGCAGGATGCAGTCAAACTTG
CTGCCGCTGCCAGCAGGACTGAGGAAGACGGGCAAGAGCCA
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Coding sequence (CDS) from alignment at C-australica_Contig_1014:6976..8466+

>mRNA_C-australica_Contig_1014.5.1 ID=mRNA_C-australica_Contig_1014.5.1|Name=mRNA_C-australica_Contig_1014.5.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=771bp|location=Sequence derived from alignment at C-australica_Contig_1014:6976..8466+ (Chrysoparadoxa australica CS_1217)
ATGGGTGAGATGGCAAACCTGCACTACCCTGAGGATCTCCCTGTCGGCCA
GAGGACAGTGAGGCGAAGGTCAAGTATCCTGGCGGGGCCGCTCCTCACGT
CCCTCAAGGAGATAGTGGAGGACAGCTTCCAAGAGCAGCTTCATTTTGAC
CACTTGTGCCTTGGTGGCGGAATAGCTGCAGCGCGATGGTGCAGTCACAT
TTCCAAGGCAGAGACAAATAGCACGGCAGCGGTCATTACTGCGTACCCGC
AGGGCATGTTCCCTTACAGCCGTGACGCTTTCATTCGTGATGTGGTCATG
TCGTCACCACCTCACTGCAGTGGGCCACCTCCAGATTGGTACCAAGACCA
AGGTGTGACAGTGCTGCACAGCTGCCAAGCAGTCAGGGCTGACTTGGACG
GAGCCTTCCTTGCCGTCAACCGAGTGGCGCACGATGGTAAAGGCAACATA
GTGTATGAGTCCTCCATAAAGATCAGCTACGGCAAGCTGGTGATTGCCAC
AGGTGCCTGTCCAAGAAGCTTCCCTGCACCTGTTCCGACCCATAACCCAG
AAGATGACTGGGCAACAGCCAAGCTCATGCAAGCAGCATGCTTCCTCACG
CGGCACCCAGATCTAAGCACAGGCAACGTGGGCACCGATGGAGCAGCCAG
CTTGGAGCTGCGAACACCCAAGGAGTACGGCTTTGGGTCAGTGCACTACA
TCAGGGATGCGGGGGATGCAGTCAAACTTGCTGCCGCTGCCAGCAGGACT
GAGGAAGACGGGCAAGAGCCA
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