mRNA_C-australica_Contig_1011.4.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1011.4.1
Unique NamemRNA_C-australica_Contig_1011.4.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1011.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1011contigC-australica_Contig_1011:9269..10867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1105
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_008690.1
Cds size648
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1011.4.1prot_C-australica_Contig_1011.4.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1011 9642..10783 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586746.8925743-UTR-C-australica_Contig_1011:9268..96411682586746.8925743-UTR-C-australica_Contig_1011:9268..9641Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1011 9269..9641 +
1682586746.9601219-UTR-C-australica_Contig_1011:10783..108671682586746.9601219-UTR-C-australica_Contig_1011:10783..10867Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1011 10784..10867 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586746.9059663-CDS-C-australica_Contig_1011:9641..96951682586746.9059663-CDS-C-australica_Contig_1011:9641..9695Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1011 9642..9695 +
1682586746.9139955-CDS-C-australica_Contig_1011:9754..99771682586746.9139955-CDS-C-australica_Contig_1011:9754..9977Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1011 9755..9977 +
1682586746.9219208-CDS-C-australica_Contig_1011:10120..102511682586746.9219208-CDS-C-australica_Contig_1011:10120..10251Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1011 10121..10251 +
1682586746.939091-CDS-C-australica_Contig_1011:10374..104221682586746.939091-CDS-C-australica_Contig_1011:10374..10422Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1011 10375..10422 +
1682586746.950927-CDS-C-australica_Contig_1011:10591..107831682586746.950927-CDS-C-australica_Contig_1011:10591..10783Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1011 10592..10783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1011.4.1

>prot_C-australica_Contig_1011.4.1 ID=prot_C-australica_Contig_1011.4.1|Name=mRNA_C-australica_Contig_1011.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=216bp
MDVALDGDDIELDDEDGEELEVALVADDDEDEDDGDAEDDEDDEDDEDGI
SEDALQGADELLGDDEDVIEDEDEVEDLDAELLAEEEAEEVPVVKVAKKR
GRPRKEPAADAGAAKPKAKAKAKAKAKAKRVKRAKKVVFDYNLGEPGTVY
SKDAKGHLLLVHKGAEGDAERCDEILGEAKERFGDLLEVHATVHDEVSLC
LLVAWCLPFRFPLAA*
back to top

mRNA from alignment at C-australica_Contig_1011:9269..10867+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1011.4.1 ID=mRNA_C-australica_Contig_1011.4.1|Name=mRNA_C-australica_Contig_1011.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1599bp|location=Sequence derived from alignment at C-australica_Contig_1011:9269..10867+ (Chrysoparadoxa australica CS_1217)
CAGTCCTCTGCCAGGGAGGCTTCTCTCACGCTCCTTGCCCTACACATGTT
CTTGTAGCCCCAAGGTACGTAGGAAGAGCTGCGTTGGCATCCAAGAGGAC
CCAGCCTGTCGGAGACGGCATATCACAACTTTGCAGCCTCTCTCGCCAGA
GATGGCTGCTCCGCCTCACACGGTTGCCCTCTTGAAGAGGGCTCACAACT
AGCCTCAGAGAGAACAGCTGCTAGCGCACTGTATTCCCCAGACACATGTG
ACCTTCTCCAGCCCCCTCCATCCCTCCCATTTCATCTTCGCTCTGCAGCC
TCATGGGACAGCATTGGGAGCAGTGATACATGACGGCGATGAAGAAGGAG
ACGAAGCCCTGGGTGATTTAGACATGGATGTGGCTCTTGATGGAGATGAT
ATAGAACTCGACGACGAGGATGGGGAGGTAAGGGATGTTGTCAGATATGT
GGTCAGGCGGCAACCTCATGTTGGCAACACTCCCAGGAGTTAGAGGTAGC
ACTTGTAGCTGATGATGATGAGGATGAGGACGATGGCGATGCTGAAGATG
ATGAAGATGATGAAGATGATGAAGATGGCATCAGTGAGGATGCTTTACAA
GGGGCAGATGAGCTGCTGGGAGACGACGAAGATGTGATTGAGGATGAAGA
CGAAGTAGAAGATTTAGATGCTGAACTCCTGGCAGAGGAGGAAGCAGAGG
AAGTGCCAGGTAGCATTAGAATGCAAGCCTAAGTGAACTGTTCACCATAA
CCACCGCTCCTTATCCTGTGTCTTTTTTTGGGTGGAGATTGAAAGCCTTA
CATGCACATCATAAACATCATGCACATCACACAACATACACCCCTTCCTC
AGTAGTGAAAGTAGCGAAGAAGCGAGGCCGGCCGCGTAAGGAGCCAGCAG
CTGATGCAGGTGCAGCCAAGCCCAAGGCAAAGGCAAAAGCAAAGGCTAAG
GCAAAGGCTAAGCGAGTTAAGAGGGCTAAGAAGGTCACCGCGCCACACCA
CACCTCACCTCACCCTGCTGGCGTGCTTGTTCTAGCTTGAACTTGCCCAA
GAAGCATTCGAACCAGAGGCTCAATGACATACCTCGCTTTCGCTCATCTT
GCCTAGGTAGTATTTGATTATAATCTTGGGGAGCCTGGGACTGTCTACTC
CAAGGTAGGCTTCTGGCTGGGATCATATACACTTCAGTTTTGCCTCTCTC
TTACACAAGATTGTGCCATCTTGACTGGCCCTGGTGAATGAGTGATGAAG
GGGAAAAAAAATCCACATGAAAAAAAAATCATTTAAATAGAAGGCTAAAT
AGAAGGCTAAACCAACCCCTCAGGATGCGAAAGGGCATCTCCTGCTGGTG
CACAAGGGTGCAGAGGGTGACGCTGAGCGCTGTGATGAAATACTTGGGGA
AGCCAAAGAGAGGTTCGGGGACTTGCTTGAGGTGCATGCTACTGTACATG
ACGAGGTAAGTTTATGCTTATTGGTTGCCTGGTGCTTGCCTTTTCGGTTT
CCTCTGGCTGCCTGATCTGCTTCTAGTCTCAAAACACATAAAACACATGG
TTGACGAGTGCTTCCATTCCATTTCGCCCATTCTGCGATCCCAATCAGG
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_1011:9269..10867+

>mRNA_C-australica_Contig_1011.4.1 ID=mRNA_C-australica_Contig_1011.4.1|Name=mRNA_C-australica_Contig_1011.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=648bp|location=Sequence derived from alignment at C-australica_Contig_1011:9269..10867+ (Chrysoparadoxa australica CS_1217)
ATGGATGTGGCTCTTGATGGAGATGATATAGAACTCGACGACGAGGATGG
GGAGGAGTTAGAGGTAGCACTTGTAGCTGATGATGATGAGGATGAGGACG
ATGGCGATGCTGAAGATGATGAAGATGATGAAGATGATGAAGATGGCATC
AGTGAGGATGCTTTACAAGGGGCAGATGAGCTGCTGGGAGACGACGAAGA
TGTGATTGAGGATGAAGACGAAGTAGAAGATTTAGATGCTGAACTCCTGG
CAGAGGAGGAAGCAGAGGAAGTGCCAGTAGTGAAAGTAGCGAAGAAGCGA
GGCCGGCCGCGTAAGGAGCCAGCAGCTGATGCAGGTGCAGCCAAGCCCAA
GGCAAAGGCAAAAGCAAAGGCTAAGGCAAAGGCTAAGCGAGTTAAGAGGG
CTAAGAAGGTAGTATTTGATTATAATCTTGGGGAGCCTGGGACTGTCTAC
TCCAAGGATGCGAAAGGGCATCTCCTGCTGGTGCACAAGGGTGCAGAGGG
TGACGCTGAGCGCTGTGATGAAATACTTGGGGAAGCCAAAGAGAGGTTCG
GGGACTTGCTTGAGGTGCATGCTACTGTACATGACGAGGTAAGTTTATGC
TTATTGGTTGCCTGGTGCTTGCCTTTTCGGTTTCCTCTGGCTGCCTGA
back to top