mRNA_C-australica_Contig_1011.3.3 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1011.3.3
Unique NamemRNA_C-australica_Contig_1011.3.3
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1011.3.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1011contigC-australica_Contig_1011:6060..8873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1958
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_004050.1
Cds size1479
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1011.3.3prot_C-australica_Contig_1011.3.3Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1011 6344..8678 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586746.7624118-UTR-C-australica_Contig_1011:6059..63431682586746.7624118-UTR-C-australica_Contig_1011:6059..6343Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1011 6060..6343 -
1682586746.8543262-UTR-C-australica_Contig_1011:8678..88731682586746.8543262-UTR-C-australica_Contig_1011:8678..8873Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1011 8679..8873 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586746.771477-CDS-C-australica_Contig_1011:6343..64091682586746.771477-CDS-C-australica_Contig_1011:6343..6409Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1011 6344..6409 -
1682586746.7802162-CDS-C-australica_Contig_1011:6592..68471682586746.7802162-CDS-C-australica_Contig_1011:6592..6847Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1011 6593..6847 -
1682586746.7899032-CDS-C-australica_Contig_1011:7028..73061682586746.7899032-CDS-C-australica_Contig_1011:7028..7306Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1011 7029..7306 -
1682586746.8073766-CDS-C-australica_Contig_1011:7447..74931682586746.8073766-CDS-C-australica_Contig_1011:7447..7493Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1011 7448..7493 -
1682586746.8244014-CDS-C-australica_Contig_1011:7631..78661682586746.8244014-CDS-C-australica_Contig_1011:7631..7866Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1011 7632..7866 -
1682586746.8347094-CDS-C-australica_Contig_1011:7989..80201682586746.8347094-CDS-C-australica_Contig_1011:7989..8020Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1011 7990..8020 -
1682586746.844538-CDS-C-australica_Contig_1011:8110..86781682586746.844538-CDS-C-australica_Contig_1011:8110..8678Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1011 8111..8678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1011.3.3

>prot_C-australica_Contig_1011.3.3 ID=prot_C-australica_Contig_1011.3.3|Name=mRNA_C-australica_Contig_1011.3.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=493bp
MESGQAQNEANVVAPNPEVASVVAPVQDTPTAPSPAAPAEAPSEAPPASE
GEIGGAPPATEAPAAAEAAPAAPVEAVAAPAEAAVPGGYPAAVAPQPGMV
AQPQPGMVAQPGMPAQQMVFPGMTTPATAPGAVYGQAPAQAPTQNEGLLM
MTAAAAAAGVGGYPAAAQPIRQDPAQPVVYAQPVESRDDEPEPMPALDKR
GPPPGEPGTRIQVLWELDAEVSLCYERNRKPCKRFTLTVCQLSFLTIVSC
PSLIYQFVWWGCELLHPVNDGMYDILYDEFEEFESCTRRVIFKSGEELYD
TDDEKTMKYRLEHLYLDLPPLPQQQEAQQAQAQPQEGQLPQQPQQPLQPQ
QPLQAQPQAEQPPQQPPQQPQQPQEPLHPIADNKEAVIPLTEVLQAQEAY
DRANEVSADQAAQLFNSLPFYQQQRIAVGYRTMADKFKDKLRDLAESKRT
DGADLVVTESDIQGILAELKQQAECNQGVADAPQTAAPSSST*
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mRNA from alignment at C-australica_Contig_1011:6060..8873-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1011.3.3 ID=mRNA_C-australica_Contig_1011.3.3|Name=mRNA_C-australica_Contig_1011.3.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2814bp|location=Sequence derived from alignment at C-australica_Contig_1011:6060..8873- (Chrysoparadoxa australica CS_1217)
TAGCCATGGAAGAAGAGAGGAAGGGAGTGAAGCGGGGCCGTGATGGGGAG
GAGATAGTTGATGGTAAAAGTTTAAAAATGGGTCGTCAAACTGCTGTCTT
GGTTCTGCCAGCTTTGACCTGTTTTGGCAAGCCCCCCCTTGCCCCGTACC
TCCTCCCACGATATCTTTCAAATTTCCATAGGCGCAGCAGGGCAGATGGA
GTCTGGGCAAGCACAAAATGAGGCAAATGTGGTTGCGCCCAATCCAGAGG
TAGCTAGCGTTGTAGCACCCGTCCAGGACACGCCTACTGCGCCGTCGCCT
GCTGCCCCAGCTGAGGCGCCATCTGAGGCCCCACCAGCCTCGGAGGGAGA
GATAGGCGGCGCTCCGCCGGCTACGGAAGCTCCTGCAGCTGCAGAGGCAG
CACCGGCAGCTCCTGTGGAAGCAGTGGCAGCTCCCGCTGAGGCAGCAGTA
CCTGGGGGCTACCCAGCAGCTGTAGCTCCTCAGCCGGGCATGGTTGCCCA
ACCCCAGCCTGGTATGGTTGCCCAGCCAGGCATGCCTGCCCAGCAAATGG
TATTTCCTGGTATGACTACTCCAGCAACAGCACCAGGTGCGGTCTACGGC
CAGGCTCCTGCACAGGCACCAACGCAAAATGAAGGCCTGCTCATGATGAC
TGCTGCTGCTGCTGCAGCTGGTGTTGGTGGCTATCCTGCTGCTGCTCAGC
CCATCAGACAAGACCCCGCGCAGCCTGTTGTATACGCGCAACCTGTCGAG
TCACGGGATGACGGTAAGGAGTACCTACCACTTGGGCAAAGGATAGCCTC
TAGTGAATGAAACTGATGGTGACGGATCCCTCCTCCCCACGCTTACCTTG
CAGAGCCAGAGCCCATGCCTGCATTAGATAAGAGGTGAGCAGCTCAGCCC
TGGCTCTCTTTTGAAAATGTGTAGCTCTAACTGTAACTGACTCTATATTG
CTGTGTTCGATTTCTGAATCTGTGTCTTTCTGAATCTGTATCTTTCTGTA
TATTTAGGGGCCCCCCTCCTGGAGAGCCAGGGACTAGGATCCAAGTGTTG
TGGGAGCTCGATGCAGAAGTGAGTTTGTGTTACGAGAGAAACCGTAAACC
GTGCAAGCGTTTTACCCTCACAGTTTGCCAACTTTCTTTCTTAACAATTG
TGTCGTGTCCTTCTCTCATTTATCAGTTTGTCTGGTGGGGCTGTGAACTC
CTTCACCCTGTAAATGATGGGATGTATGATATTCTCTATGATGTAAGTCT
AAGTCACAACACCCACCTCCTAAATCTGCATGTAACCCAGCTAACCTGGT
CTCAAGTGAGCACCCTAGAGGCAGCAGAGCCAGACTACGCACATCACTCA
ACTGACTCTGCACGCTCATCCCCTTTCCAGGAATTTGAAGAGTTTGAATC
TTGTACGCGCCGGGTGATTTTCAAGTGTAAGTTAAAGTGCCACATAGCTT
TCTTCGTTTGACTTGAGTTGCGCTCACACTATATGTTCTCTTCACTCTGA
GGGCTGACTTATCCTCTGTCCTCCTTGCTAACTAACCCCTGACCACACCT
TGTTTTACTTCCCACAGCTGGAGAGGAGCTGTACGACACTGATGATGAGA
AGACCATGAAGTACAGGCTTGAGCATCTATACCTGGACCTCCCACCTCTG
CCCCAGCAGCAAGAGGCCCAGCAGGCGCAGGCCCAGCCCCAAGAAGGGCA
ACTACCGCAGCAGCCTCAGCAACCCCTGCAACCCCAGCAGCCCCTGCAAG
CTCAGCCCCAAGCAGAGCAGCCACCTCAGCAACCACCTCAGCAACCTCAG
CAACCCCAGGAACCCCTGCACCCAATAGCAGACAACAAGGAGGCGGTAAG
AGAAGAAAGAAAGCATGCCACCTACCTCCCCACCTCAATAGCCAATCATG
ACATAACATCATATGCTTTGTCGCCATATGGTTTGCATAAAAATGACTGC
TTGGCATCACTGCTCAAGGCTAGCTGTGTGGCTAACGTTTCTCTCTCTGT
TGCTTGTTGCTTGTTGCTTGTCTTAGGTTATTCCTCTCACAGAAGTGCTG
CAGGCACAGGAAGCTTACGACCGTGCCAACGAAGTTAGCGCAGACCAAGC
AGCCCAGCTCTTCAACAGCCTTCCCTTCTATCAGCAGCAGCGCATTGCTG
TGGGCTACCGCACCATGGCAGATAAGTTTAAGGACAAGCTACGGGACCTT
GCAGAGTCGAAGCGCACAGATGGGGCCGATCTTGTGGTAACTGAATCTGA
CATACAAGGCATCCTGGCTGAACTTAAGCAGGTGATGGAAGACAAGACAA
AACAAGACCGAACAGCCTAGTAATTGCGTTCCTCTTCACCTCGCTTTTCC
AACCGCTCAGCTCATACCATTGGGTATCAGTACCTCTCAGTAACTCTCGC
TGCTGCTTATCATGGATGATATGTGACACACCCATATCCCTAACTCACTG
ATCCACCTCCGCAGCAGGCTGAGTGTAATCAGGGAGTTGCAGATGCACCT
CAAACTGCCGCTCCATCATCTTCTACCTGATAAACTGATGAAATGGCCAC
ATAGCTGAGTAAGGTGTTCTGGTGCTTAGTAGCTGCATCAATCAAGTCAG
TGATAAGAAAATATAGATACTCAAGTCACTGGGTCAGACTAGCAAGTACA
AGAGTACAAGTAGCAGGGCCTAACTCTAAGGCTCTCAAACTTCACGTGTA
ACATTATTCTTTTGTAAGGGGTTGGGTTGGGTTGGGTTGGGAAGGGAAGG
GAGTTAAACACTTCCGACTGAGTTAATACCCCAGCCCCTAATTCAATATA
GCAACTTCCACCAT
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Coding sequence (CDS) from alignment at C-australica_Contig_1011:6060..8873-

>mRNA_C-australica_Contig_1011.3.3 ID=mRNA_C-australica_Contig_1011.3.3|Name=mRNA_C-australica_Contig_1011.3.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1479bp|location=Sequence derived from alignment at C-australica_Contig_1011:6060..8873- (Chrysoparadoxa australica CS_1217)
ATGGAGTCTGGGCAAGCACAAAATGAGGCAAATGTGGTTGCGCCCAATCC
AGAGGTAGCTAGCGTTGTAGCACCCGTCCAGGACACGCCTACTGCGCCGT
CGCCTGCTGCCCCAGCTGAGGCGCCATCTGAGGCCCCACCAGCCTCGGAG
GGAGAGATAGGCGGCGCTCCGCCGGCTACGGAAGCTCCTGCAGCTGCAGA
GGCAGCACCGGCAGCTCCTGTGGAAGCAGTGGCAGCTCCCGCTGAGGCAG
CAGTACCTGGGGGCTACCCAGCAGCTGTAGCTCCTCAGCCGGGCATGGTT
GCCCAACCCCAGCCTGGTATGGTTGCCCAGCCAGGCATGCCTGCCCAGCA
AATGGTATTTCCTGGTATGACTACTCCAGCAACAGCACCAGGTGCGGTCT
ACGGCCAGGCTCCTGCACAGGCACCAACGCAAAATGAAGGCCTGCTCATG
ATGACTGCTGCTGCTGCTGCAGCTGGTGTTGGTGGCTATCCTGCTGCTGC
TCAGCCCATCAGACAAGACCCCGCGCAGCCTGTTGTATACGCGCAACCTG
TCGAGTCACGGGATGACGAGCCAGAGCCCATGCCTGCATTAGATAAGAGG
GGCCCCCCTCCTGGAGAGCCAGGGACTAGGATCCAAGTGTTGTGGGAGCT
CGATGCAGAAGTGAGTTTGTGTTACGAGAGAAACCGTAAACCGTGCAAGC
GTTTTACCCTCACAGTTTGCCAACTTTCTTTCTTAACAATTGTGTCGTGT
CCTTCTCTCATTTATCAGTTTGTCTGGTGGGGCTGTGAACTCCTTCACCC
TGTAAATGATGGGATGTATGATATTCTCTATGATGAATTTGAAGAGTTTG
AATCTTGTACGCGCCGGGTGATTTTCAAGTCTGGAGAGGAGCTGTACGAC
ACTGATGATGAGAAGACCATGAAGTACAGGCTTGAGCATCTATACCTGGA
CCTCCCACCTCTGCCCCAGCAGCAAGAGGCCCAGCAGGCGCAGGCCCAGC
CCCAAGAAGGGCAACTACCGCAGCAGCCTCAGCAACCCCTGCAACCCCAG
CAGCCCCTGCAAGCTCAGCCCCAAGCAGAGCAGCCACCTCAGCAACCACC
TCAGCAACCTCAGCAACCCCAGGAACCCCTGCACCCAATAGCAGACAACA
AGGAGGCGGTTATTCCTCTCACAGAAGTGCTGCAGGCACAGGAAGCTTAC
GACCGTGCCAACGAAGTTAGCGCAGACCAAGCAGCCCAGCTCTTCAACAG
CCTTCCCTTCTATCAGCAGCAGCGCATTGCTGTGGGCTACCGCACCATGG
CAGATAAGTTTAAGGACAAGCTACGGGACCTTGCAGAGTCGAAGCGCACA
GATGGGGCCGATCTTGTGGTAACTGAATCTGACATACAAGGCATCCTGGC
TGAACTTAAGCAGCAGGCTGAGTGTAATCAGGGAGTTGCAGATGCACCTC
AAACTGCCGCTCCATCATCTTCTACCTGA
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