mRNA_C-australica_Contig_10105.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10105.1.1
Unique NamemRNA_C-australica_Contig_10105.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10105.1.1 vs. uniprot
Match: A0A2D4S987_9GAMM (Bifunctional NAD(P)H-hydrate repair enzyme n=1 Tax=Salinisphaeraceae bacterium TaxID=2026789 RepID=A0A2D4S987_9GAMM)

HSP 1 Score: 169 bits (427), Expect = 6.820e-47
Identity = 91/168 (54.17%), Postives = 108/168 (64.29%), Query Frame = 1
Query:   31 YGAAQVAALDRRVIEAFGVPGFDLMHRAADAGFQALRGRWPEADRLAVVCGPGNNGGDGFLIATRGLASAMTVRVWFPGDPERLTGDAHRAYQACMRAGGVLTDSPSEALADAEVAVDALLGTGLGRPLAGDFLAAVQAINRAGEQGAGVLAVDIPSGLDADTGASWG 534
            Y A QV  LDRR IE  GVPGF+LM RAA + F ALRG+WP A  L +V GPGNNGGDG L+    L + + V++   GD +R  G A +A  A   AGGV+         D +V VDALLGTGL RPL G FL AV+ +N A   GAG+ AVDIP+GLDADTG  WG
Sbjct:   10 YRAEQVRELDRRFIEVHGVPGFELMQRAAHSAFDALRGQWPGARALGIVAGPGNNGGDGLLVGALALQAGLNVQLSLVGDADRARGAAAQALAAFREAGGVVDSELKLPDHDVDVVVDALLGTGLSRPLEGRFLEAVRLMNSAASAGAGLAAVDIPTGLDADTGRVWG 177          
BLAST of mRNA_C-australica_Contig_10105.1.1 vs. uniprot
Match: A0A858Q9Q2_9GAMM (Bifunctional NAD(P)H-hydrate repair enzyme n=1 Tax=Methylococcus geothermalis TaxID=2681310 RepID=A0A858Q9Q2_9GAMM)

HSP 1 Score: 161 bits (407), Expect = 5.600e-44
Identity = 89/171 (52.05%), Postives = 112/171 (65.50%), Query Frame = 1
Query:   22 TRFYGAAQVAALDRRVIEAFGVPGFDLMHRAADAGFQALRGRWPEADRLAVVCGPGNNGGDGFLIATRGLASAMTVRVWFPGDPERLTGDAHRAYQACMRAGGVLTDSPSEALADAEVAVDALLGTGLGRPLAGDFLAAVQAINRAGEQGAGVLAVDIPSGLDADTGASWG 534
            T  + AAQV A+DR  I+  G+PG +LMHRA  A F ALR RWP+A  L+VVCGPGNNGGDG++IA   LA+   VR +  G  ERL GDA  A+     A G + +        AE+ VDALLGTGL R +AG++ A ++AIN   +   GV+AVDIPSGL+ADTGA  G
Sbjct:   11 TSLFTAAQVRAMDRHAIDGLGIPGLELMHRAGTATFAALRRRWPDAKTLSVVCGPGNNGGDGYVIARLALAAGFDVRAYPVGPLERLRGDAAAAFAEYRDAEGPVLNFIPPGFEGAEILVDALLGTGLDRDVAGEYAAVIEAIN---DFPGGVVAVDIPSGLNADTGAVMG 178          
BLAST of mRNA_C-australica_Contig_10105.1.1 vs. uniprot
Match: UPI001EE8DDBA (NAD(P)H-hydrate dehydratase n=2 Tax=Ectothiorhodospira TaxID=1051 RepID=UPI001EE8DDBA)

HSP 1 Score: 160 bits (405), Expect = 1.080e-43
Identity = 91/168 (54.17%), Postives = 113/168 (67.26%), Query Frame = 1
Query:   31 YGAAQVAALDRRVIEAFGVPGFDLMHRAADAGFQALRGRWPEADRLAVVCGPGNNGGDGFLIATRGLASAMTVRVWFPGDPERLTGDAHRAYQACMRAGGVLTDSPSEALADAEVAVDALLGTGLGRPLAGDFLAAVQAINRAGEQGAGVLAVDIPSGLDADTGASWG 534
            Y AAQV  LDRR IE  G+PG+ LM RA  A    LR +WP+A  LAV CGPGNNGGDG+++A   LA+ ++VRV    DP RL G+A RA+Q     G  L+ +P EAL  A+V VD LLGTGL RP+ GD    ++ IN+AG+    VLA+DIPSGL+ADTGA  G
Sbjct:   10 YTAAQVRELDRRAIEGHGIPGYTLMCRAGAAALDRLRRQWPKARTLAVCCGPGNNGGDGYVLARLALAAGLSVRVVAATDPVRLHGEAARAWQDWQACGQPLS-TPDEALEGADVIVDGLLGTGLVRPVEGDMAHLIRCINQAGKP---VLALDIPSGLNADTGAVMG 173          
BLAST of mRNA_C-australica_Contig_10105.1.1 vs. uniprot
Match: A0A8F6CMV3_METCP (Bifunctional NAD(P)H-hydrate repair enzyme n=4 Tax=Methylococcus capsulatus TaxID=414 RepID=A0A8F6CMV3_METCP)

HSP 1 Score: 156 bits (394), Expect = 4.300e-42
Identity = 86/171 (50.29%), Postives = 108/171 (63.16%), Query Frame = 1
Query:   22 TRFYGAAQVAALDRRVIEAFGVPGFDLMHRAADAGFQALRGRWPEADRLAVVCGPGNNGGDGFLIATRGLASAMTVRVWFPGDPERLTGDAHRAYQACMRAGGVLTDSPSEALADAEVAVDALLGTGLGRPLAGDFLAAVQAINRAGEQGAGVLAVDIPSGLDADTGASWG 534
            T  + AAQV A+DR  I+  G+PG +LMHRA  A F+ALR RWPEA  L+VVCGPGNNGGDG++IA   LA+   VR +  G  ERL GD   A+     A G L +        AE+ VDALLGTGL R +  ++ A + A+N   +    V+AVDIPSGL+ADTGA  G
Sbjct:   11 TALFTAAQVRAMDRHAIDRLGIPGLELMHRAGAAAFEALRRRWPEAKTLSVVCGPGNNGGDGYVIARLALAAGFDVRAYPVGPVERLRGDGAAAFAEYRNADGPLLNFIPPGFEGAEILVDALLGTGLDRDVTDEYAAVIDAVN---DFPGKVVAVDIPSGLNADTGAVMG 178          
BLAST of mRNA_C-australica_Contig_10105.1.1 vs. uniprot
Match: A0A423QAZ7_9GAMM (Bifunctional NAD(P)H-hydrate repair enzyme n=2 Tax=Salinisphaera TaxID=180541 RepID=A0A423QAZ7_9GAMM)

HSP 1 Score: 155 bits (393), Expect = 6.690e-42
Identity = 83/167 (49.70%), Postives = 111/167 (66.47%), Query Frame = 1
Query:   31 YGAAQVAALDRRVIEAFGVPGFDLMHRAADAGFQALRGRWPEADRLAVVCGPGNNGGDGFLIATRGLASAMTVRVWFPGDPERLTGDAHRAYQACMRAGGVLTDSPSEALADAEVAVDALLGTGLGRPLAGDFLAAVQAINRAGEQGAGVLAVDIPSGLDADTGASW 531
            Y A+QV+ALD R I+ FGV G++LM RAA A F  L   W    R+ V+CGPGNNGGDGFL+A+  +A+  TV +    D + + GDA RA +     GG+++     A+ +A+V VDALLGTG+ R + GD   A++ IN AG++GAGV AVDIPSG+DA TG  W
Sbjct:   13 YEASQVSALDARFIDDFGVDGYELMQRAARAAFDELAHYWAMPGRMTVLCGPGNNGGDGFLVASLAMAAGWTVTLESLVDADEIGGDAARAVKRFRETGGLVSPFADTAI-EADVVVDALLGTGVNRDVEGDIARAIERINDAGDRGAGVFAVDIPSGIDATTGHVW 178          
BLAST of mRNA_C-australica_Contig_10105.1.1 vs. uniprot
Match: A0A8F6CAE6_9GAMM (Multifunctional fusion protein n=2 Tax=unclassified Methylococcus TaxID=2618889 RepID=A0A8F6CAE6_9GAMM)

HSP 1 Score: 155 bits (391), Expect = 1.190e-41
Identity = 87/172 (50.58%), Postives = 110/172 (63.95%), Query Frame = 1
Query:   22 TRFYGAAQVAALDRRVIEAFGVPGFDLMHRAADAGFQALRGRWPEADRLAVVCGPGNNGGDGFLIATRGLASAMTVRVWFPGDPERLTGDAHRAYQACMRAGGVLTDSPSEALADAEVAVDALLGTGLGRPLAGDFLAAVQAINR-AGEQGAGVLAVDIPSGLDADTGASWG 534
            T  + AAQV A+DR  I+  G+PG +LMHRA  A F ALR RWP+A  L+VVCGPGNNGGDG++IA   LA+   VR +  G  ERL GDA  A+       G + +        AE+ +DALLGTGL R +AG+  A ++AIN   GE    V++VDIPSGL+ADTGA  G
Sbjct:   11 TALFTAAQVRAMDRHAIDGLGIPGLELMHRAGTAAFAALRERWPDAKTLSVVCGPGNNGGDGYVIARLALAAGFDVRAYPVGPVERLRGDAAAAFAEYRDVDGPVLNFIPPGFEGAEILIDALLGTGLDRDVAGECAAVIEAINDFPGE----VVSVDIPSGLNADTGAVMG 178          
BLAST of mRNA_C-australica_Contig_10105.1.1 vs. uniprot
Match: A0A849UBF3_9GAMM (Bifunctional NAD(P)H-hydrate repair enzyme n=1 Tax=Methylococcaceae bacterium TaxID=1933926 RepID=A0A849UBF3_9GAMM)

HSP 1 Score: 154 bits (389), Expect = 2.050e-41
Identity = 86/166 (51.81%), Postives = 107/166 (64.46%), Query Frame = 1
Query:   25 RFYGAAQVAALDRRVIEAFGVPGFDLMHRAADAGFQALRGRWPEADRLAVVCGPGNNGGDGFLIATRGLASAMTVRVWFPGDPERLTGDAHRAYQACMRAGGVLTDSPSEALADAEVAVDALLGTGLGRPLAGDFLAAVQAINRAGEQGAGVLAVDIPSGLDADTG 522
            + Y AAQV  LDR  IE  G+PG +LM RA DA FQ+L+  WP+A  LAV CG GNNGGDG+++A   L +   V V+   DPE+L GDA  A+Q  + AGG +    +    DA++ VDALLGTGL R + GD+  A+ AIN      A VLAVDIPSGL ADTG
Sbjct:    7 KLYRAAQVRELDRLAIEEHGIPGIELMTRAGDALFQSLQNHWPQARSLAVFCGAGNNGGDGYIVARLALVAGYQVTVYAVSDPEQLKGDARIAWQQFVDAGGRIVSFNAGLAIDADIIVDALLGTGLDRLVTGDYADAIAAINA---NPAKVLAVDIPSGLHADTG 169          
BLAST of mRNA_C-australica_Contig_10105.1.1 vs. uniprot
Match: A0A3N1XZJ1_9GAMM (Bifunctional NAD(P)H-hydrate repair enzyme n=1 Tax=Inmirania thermothiophila TaxID=1750597 RepID=A0A3N1XZJ1_9GAMM)

HSP 1 Score: 154 bits (389), Expect = 2.090e-41
Identity = 90/178 (50.56%), Postives = 113/178 (63.48%), Query Frame = 1
Query:    1 MPALSTITRFYGAAQVAALDRRVIEAFGVPGFDLMHRAADAGFQALRGRWPEADRLAVVCGPGNNGGDGFLIATRGLASAMTVRVWFPGDPERLTGDAHRAYQACMRAGGVLTDSPSEALADAEVAVDALLGTGLGRPLAGDFLAAVQAINRAGEQGAGVLAVDIPSGLDADTGASWG 534
            M A+    R Y AA+V ALDR  IEA G+PG+ LM RA +A ++ L  RWP+A ++ V+CG GNN GDG+++A R  A    VRV    +PERL GDA  A++A   AGG +   P +      V VDALLGTGL R LAG +  AV A+N +G     VLA+DIPSGLDADTGA  G
Sbjct:    1 MEAIDPQLRLYTAAEVRALDRHAIEACGIPGYTLMRRAGEAAWRVLARRWPDAAQVTVLCGAGNNAGDGYVLAARARACGRAVRVMALVEPERLRGDATHAWRAWREAGGGV--EPFDPARLEGVVVDALLGTGLDRDLAGAWAQAVAAVNASGRP---VLALDIPSGLDADTGAVRG 173          
BLAST of mRNA_C-australica_Contig_10105.1.1 vs. uniprot
Match: H1FZX3_9GAMM (Bifunctional NAD(P)H-hydrate repair enzyme n=2 Tax=Ectothiorhodospira TaxID=1051 RepID=H1FZX3_9GAMM)

HSP 1 Score: 154 bits (389), Expect = 2.290e-41
Identity = 89/168 (52.98%), Postives = 110/168 (65.48%), Query Frame = 1
Query:   31 YGAAQVAALDRRVIEAFGVPGFDLMHRAADAGFQALRGRWPEADRLAVVCGPGNNGGDGFLIATRGLASAMTVRVWFPGDPERLTGDAHRAYQACMRAGGVLTDSPSEALADAEVAVDALLGTGLGRPLAGDFLAAVQAINRAGEQGAGVLAVDIPSGLDADTGASWG 534
            Y AAQV  LDRR IE  G+PG+ LM RA  A    LR +WP A  LAV CGPGNNGGDG+++A   L + ++VRV    DP RL G+A RA++     G  L+ +P EALA A+V VD LLGTGL R + GD    +++INRA      VLA+DIPSGL+ADTGA  G
Sbjct:   10 YTAAQVRELDRRAIEDHGIPGYTLMCRAGAAALDRLRRQWPGARTLAVCCGPGNNGGDGYVLARLALEAGLSVRVVAATDPARLRGEAERAWRDWQACGQPLS-APDEALAAADVIVDGLLGTGLTRAVEGDMARLIRSINRAAGP---VLALDIPSGLNADTGAVMG 173          
BLAST of mRNA_C-australica_Contig_10105.1.1 vs. uniprot
Match: H5SD93_9GAMM (Bifunctional NAD(P)H-hydrate repair enzyme n=1 Tax=uncultured Gammaproteobacteria bacterium TaxID=86473 RepID=H5SD93_9GAMM)

HSP 1 Score: 154 bits (388), Expect = 3.050e-41
Identity = 87/168 (51.79%), Postives = 108/168 (64.29%), Query Frame = 1
Query:   31 YGAAQVAALDRRVIEAFGVPGFDLMHRAADAGFQALRGRWPEADRLAVVCGPGNNGGDGFLIATRGLASAMTVRVWFPGDPERLTGDAHRAYQACMRAGGVLTDSPSEALADAEVAVDALLGTGLGRPLAGDFLAAVQAINRAGEQGAGVLAVDIPSGLDADTGASWG 534
            Y AAQV A+DR  IE   VPG  LM RA  A F  L+  WP+A  +AV+CG GNNGGDG+++A   L S + V+V+    PERL+GDA  AYQA   AGG ++++    L   +V VDALLGTGL RP+ G +    QAI +  E   GVLA+DIPSGL ADTGA  G
Sbjct:   11 YRAAQVRAMDRYAIEHLNVPGSVLMQRAGSAAFAVLQKHWPQAKSIAVLCGGGNNGGDGYILARCALDSGLAVKVFALSPPERLSGDAALAYQAYRAAGGEVSEALPAKLEGFDVVVDALLGTGLDRPVEGRY---AQAIAKIAEFSGGVLAIDIPSGLHADTGAILG 175          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10105.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4S987_9GAMM6.820e-4754.17Bifunctional NAD(P)H-hydrate repair enzyme n=1 Tax... [more]
A0A858Q9Q2_9GAMM5.600e-4452.05Bifunctional NAD(P)H-hydrate repair enzyme n=1 Tax... [more]
UPI001EE8DDBA1.080e-4354.17NAD(P)H-hydrate dehydratase n=2 Tax=Ectothiorhodos... [more]
A0A8F6CMV3_METCP4.300e-4250.29Bifunctional NAD(P)H-hydrate repair enzyme n=4 Tax... [more]
A0A423QAZ7_9GAMM6.690e-4249.70Bifunctional NAD(P)H-hydrate repair enzyme n=2 Tax... [more]
A0A8F6CAE6_9GAMM1.190e-4150.58Multifunctional fusion protein n=2 Tax=unclassifie... [more]
A0A849UBF3_9GAMM2.050e-4151.81Bifunctional NAD(P)H-hydrate repair enzyme n=1 Tax... [more]
A0A3N1XZJ1_9GAMM2.090e-4150.56Bifunctional NAD(P)H-hydrate repair enzyme n=1 Tax... [more]
H1FZX3_9GAMM2.290e-4152.98Bifunctional NAD(P)H-hydrate repair enzyme n=2 Tax... [more]
H5SD93_9GAMM3.050e-4151.79Bifunctional NAD(P)H-hydrate repair enzyme n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10105contigC-australica_Contig_10105:1..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog519989.ECTPHS_00375
Preferred namennrD
PFAMsCarb_kinase,YjeF_N
Model size534
Max annot lvl135613|Chromatiales
KEGG koko:K17758,ko:K17759
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.75e-42
EggNOG OGsCOG0062@1|root,COG0063@1|root,COG0062@2|Bacteria,COG0063@2|Bacteria,1MU1Q@1224|Proteobacteria,1RMPS@1236|Gammaproteobacteria,1WW1V@135613|Chromatiales
EC4.2.1.136,5.1.99.6
DescriptionBifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
Cds size534
COG categoryG
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586746.7334793-CDS-C-australica_Contig_10105:0..5341682586746.7334793-CDS-C-australica_Contig_10105:0..534Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10105 1..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10105.1.1prot_C-australica_Contig_10105.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10105 1..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10105.1.1

>prot_C-australica_Contig_10105.1.1 ID=prot_C-australica_Contig_10105.1.1|Name=mRNA_C-australica_Contig_10105.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=178bp
MPALSTITRFYGAAQVAALDRRVIEAFGVPGFDLMHRAADAGFQALRGRW
PEADRLAVVCGPGNNGGDGFLIATRGLASAMTVRVWFPGDPERLTGDAHR
AYQACMRAGGVLTDSPSEALADAEVAVDALLGTGLGRPLAGDFLAAVQAI
NRAGEQGAGVLAVDIPSGLDADTGASWG
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mRNA from alignment at C-australica_Contig_10105:1..534-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10105.1.1 ID=mRNA_C-australica_Contig_10105.1.1|Name=mRNA_C-australica_Contig_10105.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=534bp|location=Sequence derived from alignment at C-australica_Contig_10105:1..534- (Chrysoparadoxa australica CS_1217)
ATGCCGGCGTTGTCGACCATCACCCGGTTCTACGGCGCCGCCCAGGTGGC GGCGCTGGATCGTCGCGTGATCGAGGCATTTGGCGTGCCGGGCTTCGACC TGATGCACCGGGCCGCCGATGCCGGCTTCCAGGCGTTGCGTGGACGCTGG CCCGAGGCGGACCGCCTGGCCGTGGTCTGCGGCCCCGGCAACAACGGTGG CGATGGCTTTCTGATCGCCACTCGCGGCCTGGCATCGGCGATGACCGTGC GCGTCTGGTTCCCGGGCGACCCCGAGCGTCTGACCGGCGATGCGCACCGG GCTTACCAGGCCTGCATGCGGGCGGGCGGGGTTCTCACGGACAGCCCGTC CGAGGCGCTGGCCGATGCCGAGGTGGCGGTGGATGCCCTGTTGGGTACCG GACTGGGGCGGCCGCTGGCCGGTGATTTTCTGGCGGCAGTGCAGGCCATC AACCGGGCCGGCGAGCAGGGGGCGGGGGTGCTGGCGGTCGACATTCCCTC GGGCCTGGATGCCGACACCGGCGCGAGCTGGGGT
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Coding sequence (CDS) from alignment at C-australica_Contig_10105:1..534-

>mRNA_C-australica_Contig_10105.1.1 ID=mRNA_C-australica_Contig_10105.1.1|Name=mRNA_C-australica_Contig_10105.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=534bp|location=Sequence derived from alignment at C-australica_Contig_10105:1..534- (Chrysoparadoxa australica CS_1217)
ATGCCGGCGTTGTCGACCATCACCCGGTTCTACGGCGCCGCCCAGGTGGC
GGCGCTGGATCGTCGCGTGATCGAGGCATTTGGCGTGCCGGGCTTCGACC
TGATGCACCGGGCCGCCGATGCCGGCTTCCAGGCGTTGCGTGGACGCTGG
CCCGAGGCGGACCGCCTGGCCGTGGTCTGCGGCCCCGGCAACAACGGTGG
CGATGGCTTTCTGATCGCCACTCGCGGCCTGGCATCGGCGATGACCGTGC
GCGTCTGGTTCCCGGGCGACCCCGAGCGTCTGACCGGCGATGCGCACCGG
GCTTACCAGGCCTGCATGCGGGCGGGCGGGGTTCTCACGGACAGCCCGTC
CGAGGCGCTGGCCGATGCCGAGGTGGCGGTGGATGCCCTGTTGGGTACCG
GACTGGGGCGGCCGCTGGCCGGTGATTTTCTGGCGGCAGTGCAGGCCATC
AACCGGGCCGGCGAGCAGGGGGCGGGGGTGCTGGCGGTCGACATTCCCTC
GGGCCTGGATGCCGACACCGGCGCGAGCTGGGGT
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