mRNA_C-australica_Contig_1010.4.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1010.4.1
Unique NamemRNA_C-australica_Contig_1010.4.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_1010.4.1 vs. uniprot
Match: A0A835YX81_9STRA (Yos1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX81_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 6.040e-10
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = -1 
Query: 1104 PALGSTSMKNQAIGLINAVTYAV-PLIAMNLLTCAFEMLFGG 1226
            PALGS+++KNQAIGLINAV Y   PLIA+NLLTC FEMLFGG
Sbjct:   37 PALGSSNLKNQAIGLINAVAYLRGPLIAINLLTCTFEMLFGG 78
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1010.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YX81_9STRA6.040e-1078.57Yos1-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1010contigC-australica_Contig_1010:15397..17047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1226
Hectar predicted targeting categoryother localisation
Exons6
Cds size939
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1010.4.1prot_C-australica_Contig_1010.4.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1010 15414..16704 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586746.5000997-UTR-C-australica_Contig_1010:15396..154131682586746.5000997-UTR-C-australica_Contig_1010:15396..15413Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1010 15397..15413 +
1682586746.5585957-UTR-C-australica_Contig_1010:16704..169121682586746.5585957-UTR-C-australica_Contig_1010:16704..16912Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1010 16705..16912 +
1682586746.5717342-UTR-C-australica_Contig_1010:16985..170471682586746.5717342-UTR-C-australica_Contig_1010:16985..17047Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1010 16986..17047 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586746.509151-CDS-C-australica_Contig_1010:15413..154841682586746.509151-CDS-C-australica_Contig_1010:15413..15484Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1010 15414..15484 +
1682586746.5171373-CDS-C-australica_Contig_1010:15552..158931682586746.5171373-CDS-C-australica_Contig_1010:15552..15893Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1010 15553..15893 +
1682586746.5249686-CDS-C-australica_Contig_1010:15965..162011682586746.5249686-CDS-C-australica_Contig_1010:15965..16201Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1010 15966..16201 +
1682586746.5332189-CDS-C-australica_Contig_1010:16307..164381682586746.5332189-CDS-C-australica_Contig_1010:16307..16438Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1010 16308..16438 +
1682586746.542507-CDS-C-australica_Contig_1010:16544..167041682586746.542507-CDS-C-australica_Contig_1010:16544..16704Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1010 16545..16704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1010.4.1

>prot_C-australica_Contig_1010.4.1 ID=prot_C-australica_Contig_1010.4.1|Name=mRNA_C-australica_Contig_1010.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=313bp
MSLFGGTPSSNGSFYSDSSLGSVRSHPRAFAGFVGASRVFKEQGRHSQGT
QWGQRAIAAMKADNQAWAEAALSQELADPDAVVCGGREGAPFCYASGALF
TKEQMQLTRDELKEKSRQWAERHAKFITPLEWADIDEVLELIGSYAHTSL
SKVVVGDTGMHLAVRFGSMNVANAYLEAGADPSIENQEGKRVAHVLVENH
QRIQELLKKMAALEIQRNSTLLAPLSAAELDLLGREEGIRRKEWEYRGFA
EALCQHFETRCENLGEMRMKAKQSEMMDEAVDPAVLRELDYASKFVSDKE
ALRSHLLTPPHK*
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mRNA from alignment at C-australica_Contig_1010:15397..17047+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1010.4.1 ID=mRNA_C-australica_Contig_1010.4.1|Name=mRNA_C-australica_Contig_1010.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1651bp|location=Sequence derived from alignment at C-australica_Contig_1010:15397..17047+ (Chrysoparadoxa australica CS_1217)
CCCCTCTTCCTCTCAAAATGAGCCTCTTCGGGGGGACACCATCATCTAAT
GGGAGCTTCTACAGTGATAGCTCACTGGGGAGTGTCAGGTGCTGCTGAAC
CCGGTTCAATCGCTCCTGCCGACACTCTGTCACCCACCTCCCCACACCTC
TTACAGATCTCACCCTCGCGCATTCGCTGGCTTCGTGGGGGCCTCGAGGG
TCTTCAAGGAGCAAGGAAGGCATAGCCAGGGCACTCAATGGGGACAGAGG
GCCATTGCAGCGATGAAAGCAGACAACCAGGCATGGGCGGAGGCAGCACT
CTCCCAGGAACTAGCAGACCCTGATGCCGTGGTTTGCGGAGGACGTGAAG
GAGCTCCTTTCTGCTACGCTTCTGGTGCCCTCTTCACAAAGGAGCAGATG
CAACTAACGAGAGATGAGCTCAAGGAAAAGTCCCGCCAGTGGGCAGAGAG
GCATGCAAAGTTCATCACACCATTGGAGTGGGCTGACATAGATGAAGGTA
GGAGCCCCCACCATCCACACACACTCGCTTCCCCTCACAAACCCCTGCCA
CTCCCTCCCTCCCTGGCAGTGCTTGAACTGATTGGGAGCTACGCCCACAC
TAGCCTATCCAAAGTTGTGGTGGGCGACACGGGGATGCATCTTGCTGTGC
GCTTTGGGAGCATGAATGTTGCCAATGCATACCTTGAGGCCGGTGCTGAC
CCCAGCATTGAGAACCAAGAAGGCAAGCGAGTGGCTCATGTACTCGTTGA
GAATCACCAGCGCATCCAGGAGCTGTTAAAGAAAATGGCAGCACTGGAGA
TCCAGGTAAGGAATCAACAAGCTGGGTAGTAGCTGATGGTGAGATGCACC
AGAGGTCCTGCGCTGCTGCTCTTGCCTGCATTCCTAACGCCATACTGACA
AATCTACGCAGAGGAACAGCACGCTGCTTGCGCCTCTTTCAGCTGCAGAG
CTTGACCTGTTGGGGAGGGAGGAGGGCATCAGAAGAAAAGAATGGGAGTA
TAGGGGGTTTGCGGAGGCTTTGTGCCAGCATTTTGAGACGAGGTGACGCA
GCCCATCCAGTTCATACAGATGACCTCACAGGCAGAGCTAGTGTTAGTCA
GCCCATTGCATAGGAGCTAATTCATTCGCTTACATGTTATGGTACTAGGT
GTGAAAATTTGGGAGAGATGCGCATGAAAGCAAAGCAAAGCGAAATGATG
GATGAGGCTGTCGATCCAGCCGTATTGCGGGAGCTAGATTATGCAAGCAA
GTTTGTGAGTGACAAGGAAGCGCTCCGCAGCCATTTGCTCACCCCCCCCC
ACAAATAAGAGGGCTGTTATTCTGCCTGTCAGTGGCTGTTCTAGGAGGGA
GTTGTTCTTGCTCACCTTTTGTCCTAGGGGGTGTAATACAAAGACTGGAG
GCGTGGCAAAGGGTTGTACCAAATCCTTGCCTCTCCAGCTTCCTGGAGCC
CATTAGCCCCCGAAAAGCATCTCAAATGCGCACGTCAACAAGTTCATAGC
GATGAGAGGAACTGCAGTAGAGGGGTGTCGCCTTAGGTTATCGAATGCCA
ATGTTGCTGTGCTCTGAGTGAGTGATGGTACCTCGCAAGTAGGTGACTGC
ATTGATCAAACCAATAGCCTGGTTCTTCATGCTTGTGGATCCCAAGGCTG
G
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Coding sequence (CDS) from alignment at C-australica_Contig_1010:15397..17047+

>mRNA_C-australica_Contig_1010.4.1 ID=mRNA_C-australica_Contig_1010.4.1|Name=mRNA_C-australica_Contig_1010.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=939bp|location=Sequence derived from alignment at C-australica_Contig_1010:15397..17047+ (Chrysoparadoxa australica CS_1217)
ATGAGCCTCTTCGGGGGGACACCATCATCTAATGGGAGCTTCTACAGTGA
TAGCTCACTGGGGAGTGTCAGATCTCACCCTCGCGCATTCGCTGGCTTCG
TGGGGGCCTCGAGGGTCTTCAAGGAGCAAGGAAGGCATAGCCAGGGCACT
CAATGGGGACAGAGGGCCATTGCAGCGATGAAAGCAGACAACCAGGCATG
GGCGGAGGCAGCACTCTCCCAGGAACTAGCAGACCCTGATGCCGTGGTTT
GCGGAGGACGTGAAGGAGCTCCTTTCTGCTACGCTTCTGGTGCCCTCTTC
ACAAAGGAGCAGATGCAACTAACGAGAGATGAGCTCAAGGAAAAGTCCCG
CCAGTGGGCAGAGAGGCATGCAAAGTTCATCACACCATTGGAGTGGGCTG
ACATAGATGAAGTGCTTGAACTGATTGGGAGCTACGCCCACACTAGCCTA
TCCAAAGTTGTGGTGGGCGACACGGGGATGCATCTTGCTGTGCGCTTTGG
GAGCATGAATGTTGCCAATGCATACCTTGAGGCCGGTGCTGACCCCAGCA
TTGAGAACCAAGAAGGCAAGCGAGTGGCTCATGTACTCGTTGAGAATCAC
CAGCGCATCCAGGAGCTGTTAAAGAAAATGGCAGCACTGGAGATCCAGAG
GAACAGCACGCTGCTTGCGCCTCTTTCAGCTGCAGAGCTTGACCTGTTGG
GGAGGGAGGAGGGCATCAGAAGAAAAGAATGGGAGTATAGGGGGTTTGCG
GAGGCTTTGTGCCAGCATTTTGAGACGAGGTGTGAAAATTTGGGAGAGAT
GCGCATGAAAGCAAAGCAAAGCGAAATGATGGATGAGGCTGTCGATCCAG
CCGTATTGCGGGAGCTAGATTATGCAAGCAAGTTTGTGAGTGACAAGGAA
GCGCTCCGCAGCCATTTGCTCACCCCCCCCCACAAATAA
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