Homology
BLAST of mRNA_C-australica_Contig_1010.4.1 vs. uniprot
Match: A0A835YX81_9STRA (Yos1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX81_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 6.040e-10 Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = -1 Query: 1104 PALGSTSMKNQAIGLINAVTYAV-PLIAMNLLTCAFEMLFGG 1226
PALGS+++KNQAIGLINAV Y PLIA+NLLTC FEMLFGG
Sbjct: 37 PALGSSNLKNQAIGLINAVAYLRGPLIAINLLTCTFEMLFGG 78
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1226 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Cds size | 939 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682586746.5000997-UTR-C-australica_Contig_1010:15396..15413 | 1682586746.5000997-UTR-C-australica_Contig_1010:15396..15413 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_1010 15397..15413 + |
| 1682586746.5585957-UTR-C-australica_Contig_1010:16704..16912 | 1682586746.5585957-UTR-C-australica_Contig_1010:16704..16912 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_1010 16705..16912 + |
| 1682586746.5717342-UTR-C-australica_Contig_1010:16985..17047 | 1682586746.5717342-UTR-C-australica_Contig_1010:16985..17047 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_1010 16986..17047 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682586746.509151-CDS-C-australica_Contig_1010:15413..15484 | 1682586746.509151-CDS-C-australica_Contig_1010:15413..15484 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1010 15414..15484 + |
| 1682586746.5171373-CDS-C-australica_Contig_1010:15552..15893 | 1682586746.5171373-CDS-C-australica_Contig_1010:15552..15893 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1010 15553..15893 + |
| 1682586746.5249686-CDS-C-australica_Contig_1010:15965..16201 | 1682586746.5249686-CDS-C-australica_Contig_1010:15965..16201 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1010 15966..16201 + |
| 1682586746.5332189-CDS-C-australica_Contig_1010:16307..16438 | 1682586746.5332189-CDS-C-australica_Contig_1010:16307..16438 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1010 16308..16438 + |
| 1682586746.542507-CDS-C-australica_Contig_1010:16544..16704 | 1682586746.542507-CDS-C-australica_Contig_1010:16544..16704 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1010 16545..16704 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1010.4.1 >prot_C-australica_Contig_1010.4.1 ID=prot_C-australica_Contig_1010.4.1|Name=mRNA_C-australica_Contig_1010.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=313bp
MSLFGGTPSSNGSFYSDSSLGSVRSHPRAFAGFVGASRVFKEQGRHSQGT
QWGQRAIAAMKADNQAWAEAALSQELADPDAVVCGGREGAPFCYASGALF
TKEQMQLTRDELKEKSRQWAERHAKFITPLEWADIDEVLELIGSYAHTSL
SKVVVGDTGMHLAVRFGSMNVANAYLEAGADPSIENQEGKRVAHVLVENH
QRIQELLKKMAALEIQRNSTLLAPLSAAELDLLGREEGIRRKEWEYRGFA
EALCQHFETRCENLGEMRMKAKQSEMMDEAVDPAVLRELDYASKFVSDKE
ALRSHLLTPPHK* back to topmRNA from alignment at C-australica_Contig_1010:15397..17047+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-australica_Contig_1010.4.1 ID=mRNA_C-australica_Contig_1010.4.1|Name=mRNA_C-australica_Contig_1010.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1651bp|location=Sequence derived from alignment at C-australica_Contig_1010:15397..17047+ (Chrysoparadoxa australica CS_1217)
CCCCTCTTCCTCTCAAAATGAGCCTCTTCGGGGGGACACCATCATCTAAT
GGGAGCTTCTACAGTGATAGCTCACTGGGGAGTGTCAGGTGCTGCTGAAC
CCGGTTCAATCGCTCCTGCCGACACTCTGTCACCCACCTCCCCACACCTC
TTACAGATCTCACCCTCGCGCATTCGCTGGCTTCGTGGGGGCCTCGAGGG
TCTTCAAGGAGCAAGGAAGGCATAGCCAGGGCACTCAATGGGGACAGAGG
GCCATTGCAGCGATGAAAGCAGACAACCAGGCATGGGCGGAGGCAGCACT
CTCCCAGGAACTAGCAGACCCTGATGCCGTGGTTTGCGGAGGACGTGAAG
GAGCTCCTTTCTGCTACGCTTCTGGTGCCCTCTTCACAAAGGAGCAGATG
CAACTAACGAGAGATGAGCTCAAGGAAAAGTCCCGCCAGTGGGCAGAGAG
GCATGCAAAGTTCATCACACCATTGGAGTGGGCTGACATAGATGAAGGTA
GGAGCCCCCACCATCCACACACACTCGCTTCCCCTCACAAACCCCTGCCA
CTCCCTCCCTCCCTGGCAGTGCTTGAACTGATTGGGAGCTACGCCCACAC
TAGCCTATCCAAAGTTGTGGTGGGCGACACGGGGATGCATCTTGCTGTGC
GCTTTGGGAGCATGAATGTTGCCAATGCATACCTTGAGGCCGGTGCTGAC
CCCAGCATTGAGAACCAAGAAGGCAAGCGAGTGGCTCATGTACTCGTTGA
GAATCACCAGCGCATCCAGGAGCTGTTAAAGAAAATGGCAGCACTGGAGA
TCCAGGTAAGGAATCAACAAGCTGGGTAGTAGCTGATGGTGAGATGCACC
AGAGGTCCTGCGCTGCTGCTCTTGCCTGCATTCCTAACGCCATACTGACA
AATCTACGCAGAGGAACAGCACGCTGCTTGCGCCTCTTTCAGCTGCAGAG
CTTGACCTGTTGGGGAGGGAGGAGGGCATCAGAAGAAAAGAATGGGAGTA
TAGGGGGTTTGCGGAGGCTTTGTGCCAGCATTTTGAGACGAGGTGACGCA
GCCCATCCAGTTCATACAGATGACCTCACAGGCAGAGCTAGTGTTAGTCA
GCCCATTGCATAGGAGCTAATTCATTCGCTTACATGTTATGGTACTAGGT
GTGAAAATTTGGGAGAGATGCGCATGAAAGCAAAGCAAAGCGAAATGATG
GATGAGGCTGTCGATCCAGCCGTATTGCGGGAGCTAGATTATGCAAGCAA
GTTTGTGAGTGACAAGGAAGCGCTCCGCAGCCATTTGCTCACCCCCCCCC
ACAAATAAGAGGGCTGTTATTCTGCCTGTCAGTGGCTGTTCTAGGAGGGA
GTTGTTCTTGCTCACCTTTTGTCCTAGGGGGTGTAATACAAAGACTGGAG
GCGTGGCAAAGGGTTGTACCAAATCCTTGCCTCTCCAGCTTCCTGGAGCC
CATTAGCCCCCGAAAAGCATCTCAAATGCGCACGTCAACAAGTTCATAGC
GATGAGAGGAACTGCAGTAGAGGGGTGTCGCCTTAGGTTATCGAATGCCA
ATGTTGCTGTGCTCTGAGTGAGTGATGGTACCTCGCAAGTAGGTGACTGC
ATTGATCAAACCAATAGCCTGGTTCTTCATGCTTGTGGATCCCAAGGCTG
G back to topCoding sequence (CDS) from alignment at C-australica_Contig_1010:15397..17047+ >mRNA_C-australica_Contig_1010.4.1 ID=mRNA_C-australica_Contig_1010.4.1|Name=mRNA_C-australica_Contig_1010.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=939bp|location=Sequence derived from alignment at C-australica_Contig_1010:15397..17047+ (Chrysoparadoxa australica CS_1217)
ATGAGCCTCTTCGGGGGGACACCATCATCTAATGGGAGCTTCTACAGTGA
TAGCTCACTGGGGAGTGTCAGATCTCACCCTCGCGCATTCGCTGGCTTCG
TGGGGGCCTCGAGGGTCTTCAAGGAGCAAGGAAGGCATAGCCAGGGCACT
CAATGGGGACAGAGGGCCATTGCAGCGATGAAAGCAGACAACCAGGCATG
GGCGGAGGCAGCACTCTCCCAGGAACTAGCAGACCCTGATGCCGTGGTTT
GCGGAGGACGTGAAGGAGCTCCTTTCTGCTACGCTTCTGGTGCCCTCTTC
ACAAAGGAGCAGATGCAACTAACGAGAGATGAGCTCAAGGAAAAGTCCCG
CCAGTGGGCAGAGAGGCATGCAAAGTTCATCACACCATTGGAGTGGGCTG
ACATAGATGAAGTGCTTGAACTGATTGGGAGCTACGCCCACACTAGCCTA
TCCAAAGTTGTGGTGGGCGACACGGGGATGCATCTTGCTGTGCGCTTTGG
GAGCATGAATGTTGCCAATGCATACCTTGAGGCCGGTGCTGACCCCAGCA
TTGAGAACCAAGAAGGCAAGCGAGTGGCTCATGTACTCGTTGAGAATCAC
CAGCGCATCCAGGAGCTGTTAAAGAAAATGGCAGCACTGGAGATCCAGAG
GAACAGCACGCTGCTTGCGCCTCTTTCAGCTGCAGAGCTTGACCTGTTGG
GGAGGGAGGAGGGCATCAGAAGAAAAGAATGGGAGTATAGGGGGTTTGCG
GAGGCTTTGTGCCAGCATTTTGAGACGAGGTGTGAAAATTTGGGAGAGAT
GCGCATGAAAGCAAAGCAAAGCGAAATGATGGATGAGGCTGTCGATCCAG
CCGTATTGCGGGAGCTAGATTATGCAAGCAAGTTTGTGAGTGACAAGGAA
GCGCTCCGCAGCCATTTGCTCACCCCCCCCCACAAATAA back to top
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