mRNA_C-australica_Contig_1010.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_C-australica_Contig_1010.1.1 vs. uniprot
Match: A0A8K1FLY0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLY0_PYTOL)

HSP 1 Score: 62.4 bits (150), Expect = 8.820e-7
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 3

Query:  879 RDAKEALLCRSENAVEQKSVFLIPCRHLCLCQPCSQHDGMNRCPICREDIEITQIVY 1049
            +D K  ++C S     +KS+  +PCRHLCLCQ CSQH  +++CPICR  ++   +VY
Sbjct:  857 QDHKLCVICLSN----EKSILCLPCRHLCLCQECSQHQELDKCPICRLGVDNMLLVY 909

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BLAST of mRNA_C-australica_Contig_1010.1.1 vs. uniprot
Match: A0A7S4DHZ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHZ0_HETAK)

HSP 1 Score: 58.9 bits (141), Expect = 1.580e-6
Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 3

Query:  882 DAKEALLCRSENAVEQKSVFLIPCRHLCLCQPCSQHDGMNRCPICREDIEITQIVY 1049
            +  + ++C+ ENA   KS+ ++PCRHLCLCQ CS++  +  CP+CR DI+ T  V+
Sbjct:  148 EQNQCVICQ-ENA---KSILILPCRHLCLCQSCSENPRLKSCPLCRNDIKETLQVF 199

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BLAST of mRNA_C-australica_Contig_1010.1.1 vs. uniprot
Match: A0A7S3H223_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H223_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.600e-6
Identity = 29/61 (47.54%), Postives = 38/61 (62.30%), Query Frame = 3

Query:  882 DAKEALLCRSE--NAVEQ----------KSVFLIPCRHLCLCQPCSQHDGMNRCPICREDI 1028
            +AK+A+L R++  N  EQ          KSV L+PCRHLC+C  CS HD +  CP+CRE I
Sbjct:   66 EAKKAVLIRNQIGNQKEQRVCVVCQEHEKSVVLLPCRHLCVCDVCSTHDLLKMCPLCREPI 126

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BLAST of mRNA_C-australica_Contig_1010.1.1 vs. uniprot
Match: A0A485KWE6_9STRA (Aste57867_12514 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KWE6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.310e-6
Identity = 24/68 (35.29%), Postives = 44/68 (64.71%), Query Frame = 3

Query:  846 RRSLFS*EEMPRDAKEALLCRSENAVEQKSVFLIPCRHLCLCQPCSQHDGMNRCPICREDIEITQIVY 1049
            R++L    E+ ++ K  ++C +     +K++  +PCRH+C+C+ C+ H+ M RCPICR +IE   ++Y
Sbjct:  623 RQALDRQVEVHQELKLCVVCMAT----EKTILCLPCRHVCMCEACANHEQMQRCPICRLEIEEKMLIY 686

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BLAST of mRNA_C-australica_Contig_1010.1.1 vs. uniprot
Match: A0A1V9Z0G8_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z0G8_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.960e-6
Identity = 24/60 (40.00%), Postives = 39/60 (65.00%), Query Frame = 3

Query:  870 EMPRDAKEALLCRSENAVEQKSVFLIPCRHLCLCQPCSQHDGMNRCPICREDIEITQIVY 1049
            E  ++ K  ++C S     +K++  +PCRH+C+CQ CS H+ + RCPICR +IE   ++Y
Sbjct:  473 EEQQELKLCVICLSA----EKTILCLPCRHVCMCQECSNHNEVVRCPICRLEIEEKMVIY 528

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BLAST of mRNA_C-australica_Contig_1010.1.1 vs. uniprot
Match: A0A482S6W3_9ARCH (RING-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6W3_9ARCH)

HSP 1 Score: 55.5 bits (132), Expect = 8.030e-6
Identity = 24/53 (45.28%), Postives = 36/53 (67.92%), Query Frame = 3

Query:  870 EMPRDAKEALLCRSENAVEQKSVFLIPCRHLCLCQPCSQHDGMNRCPICREDI 1028
            E  ++ +  ++C+ EN   +K+V L+PCRHLCLC  CS H  ++ CP+CRE I
Sbjct:   81 EAQKEQRLCVICQ-EN---EKTVVLLPCRHLCLCDGCSVHSALDMCPLCREAI 129

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BLAST of mRNA_C-australica_Contig_1010.1.1 vs. uniprot
Match: A0A067D9C5_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D9C5_SAPPC)

HSP 1 Score: 58.9 bits (141), Expect = 1.010e-5
Identity = 23/60 (38.33%), Postives = 39/60 (65.00%), Query Frame = 3

Query:  870 EMPRDAKEALLCRSENAVEQKSVFLIPCRHLCLCQPCSQHDGMNRCPICREDIEITQIVY 1049
            E+ ++ K  ++C +     +K++  +PCRH+C+CQ CS H  + RCPICR DI+   ++Y
Sbjct:  633 EVQQELKLCVICLTA----EKTILCLPCRHVCMCQACSGHAEVTRCPICRLDIQEKMLIY 688

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BLAST of mRNA_C-australica_Contig_1010.1.1 vs. uniprot
Match: T0S2N8_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S2N8_SAPDV)

HSP 1 Score: 58.9 bits (141), Expect = 1.010e-5
Identity = 23/60 (38.33%), Postives = 39/60 (65.00%), Query Frame = 3

Query:  870 EMPRDAKEALLCRSENAVEQKSVFLIPCRHLCLCQPCSQHDGMNRCPICREDIEITQIVY 1049
            E+ ++ K  ++C +     +K++  +PCRH+C+CQ CS H  + RCPICR DI+   ++Y
Sbjct:  636 EVQQELKLCVICLTA----EKTILCLPCRHVCMCQACSGHAEVTRCPICRLDIQEKMLIY 691

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BLAST of mRNA_C-australica_Contig_1010.1.1 vs. uniprot
Match: K3X4I9_GLOUD (RING-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4I9_GLOUD)

HSP 1 Score: 58.9 bits (141), Expect = 1.120e-5
Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 3

Query:  870 EMPRDAKEALLCRSENAVEQKSVFLIPCRHLCLCQPCSQHDGMNRCPICREDIEITQIVY 1049
            E  ++ K  ++C S     +KS+  +PCRHLCLC+ CS H+ + +CPICR  I+   +VY
Sbjct:  877 EEQQELKLCVICLSN----EKSILCLPCRHLCLCESCSAHEEVEKCPICRLHIDEMLLVY 932

[Close]

BLAST of mRNA_C-australica_Contig_1010.1.1 vs. uniprot
Match: A0A7S3XJT7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJT7_HETAK)

HSP 1 Score: 55.8 bits (133), Expect = 1.270e-5
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 3

Query:  930 KSVFLIPCRHLCLCQPCSQHDGMNRCPICREDIE 1031
            KSV ++PCRHLCLCQ CS++  +  CP+CRE+IE
Sbjct:  138 KSVLILPCRHLCLCQGCSENQLLRTCPLCRENIE 171

The following BLAST results are available for this feature:

BLAST of mRNA_C-australica_Contig_1010.1.1 vs. uniprot

BLAST of mRNA_C-australica_Contig_1010.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16

ZOOM

x 1

POSITION

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Match Name	E-value	Identity	Description
A0A8K1FLY0_PYTOL	8.820e-7	45.61	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A7S4DHZ0_HETAK	1.580e-6	44.64	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7S3H223_9STRA	1.600e-6	47.54	Hypothetical protein n=1 Tax=Spumella elongata Tax...	[more]
A0A485KWE6_9STRA	4.310e-6	35.29	Aste57867_12514 protein n=1 Tax=Aphanomyces stella...	[more]
A0A1V9Z0G8_9STRA	4.960e-6	40.00	Uncharacterized protein n=1 Tax=Thraustotheca clav...	[more]
A0A482S6W3_9ARCH	8.030e-6	45.28	RING-type domain-containing protein n=1 Tax=archae...	[more]
A0A067D9C5_SAPPC	1.010e-5	38.33	Uncharacterized protein n=1 Tax=Saprolegnia parasi...	[more]
T0S2N8_SAPDV	1.010e-5	38.33	Uncharacterized protein n=1 Tax=Saprolegnia diclin...	[more]
K3X4I9_GLOUD	1.120e-5	41.67	RING-type domain-containing protein n=1 Tax=Globis...	[more]
A0A7S3XJT7_HETAK	1.270e-5	61.76	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]

Pages

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	115417.EPrPW00000021592
PFAMs	RRM_1,zf-C3HC4_3
Model size	1184
Max annot lvl	121069\|Pythiales
Hectar predicted targeting category	other localisation
Exons	4
Evalue	5.4e-09
EggNOG OGs	28YBZ@1\|root,2R55T@2759\|Eukaryota,1MATW@121069\|Pythiales
Description	Zinc finger, C3HC4 type (RING finger)
Cds size	186
COG category	A

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-australica_Contig_1010:381..2033+
coding sequence from alignment at C-australica_Contig_1010:381..2033+

protein sequence of mRNA_C-australica_Contig_1010.1.1

>prot_C-australica_Contig_1010.1.1 ID=prot_C-australica_Contig_1010.1.1|Name=mRNA_C-australica_Contig_1010.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=62bp
MPRDAKEALLCRSENAVEQKSVFLIPCRHLCLCQPCSQHDGMNRCPICRE
DIEITQIVYIS*

mRNA from alignment at C-australica_Contig_1010:381..2033+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-australica_Contig_1010.1.1 ID=mRNA_C-australica_Contig_1010.1.1|Name=mRNA_C-australica_Contig_1010.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1653bp|location=Sequence derived from alignment at C-australica_Contig_1010:381..2033+ (Chrysoparadoxa australica CS_1217)
GGATGAGCATGGGCATGCTGTCAACCGTGCCTTTGGGCTGTCATGCTTTG
TTGAGAGGGACGGAGGGGAGCACACGCCAGAGACCGGAACATAAAATGGA
TGGGCGAGTAATTATTAATTAGGAGAGAGAATACCTTATTCATGCCAGAA
GGGAATGAGCTCGGCTGAAATTGCACTACCTTGTTCTTTGCAGCCCCAGA
GATGATTCAACACGAGCCTTATAGCGAGGGTGCTGATGTCTACAGCTATG
GCATTGTACATTTTCATTTGCTCTGCTCTTGCCTTGTTGGGTTAGGGTTA
GGGCAATAGGCAACTGGCAGCTTGTGTGACTTTGGCACCGTTACCCTTCA
GGGTTACGACCCAGGCTACCTCCTGTTACACCTGATGCATTAGCCAAGCT
GGTGCGAAGTTGCTGGCATGGGGTAGCTAGCCGAAGACCATCCTTTGATC
AGGTGAGAGAGAATACTTGAGTCAAGCAAACAAACTGACCCTCTCCTCGC
CTTGCTCAAGCCCTTTGCTTGATGCATTCACAGACGCATTTACTAAAGCC
TTTGCTATATATGTGCCTTTCTTCCCTCGGATCTGCCAAATGATTCCTGA
CGTGACATTAGTGGCGCAACACAGTGATTTGCCTCAGCAAGGACTGCTTG
GGGGCACACATTCATCAGACAGCCACCTAAACCAGTGCTTGGGCCCGCCG
GCCACAAGCTTGGGACACTATCTTTCAGCTGCTGACAGGGCTTTTGTGAT
TTGTGAAAACAACAAGCAAAAATACTAATATGGTGGCAGCTCTACATGGG
AAGCTGAATACATTGCTTGAATATACCACCATGCTGCCACCTACTGGTGT
AAAATCTCCACCTCTTGCTCCGATGCCTCCTCCTCCTGCTGGTGCTGCTG
GTGCTGCTGGTGCTGCTGTGCTGCCAGGTTAGGCCTTGCTGTCACGCAAG
ATTTGCTTCATGATGCGTGTGACACGCTGCATCATGAACATGACCCTCTT
CTGGCGCCGGTCTTTATTCTCTTAAGAGGAAATGCCGAGAGATGCAAAGG
AAGCTTTGCTTTGCAGATCAGAAAATGCAGTTGAGCAGAAGAGTGTGTTC
CTCATCCCCTGCAGGTAGCTGCCTGAGAGAACAAGCCCTATAGAGTAGCC
ACAGCTTAGCTAACCAATAGATACCCAAGTATATAACCCACGTGAAGTCC
TAGCAAGCTCCCTGTCTTCCCTGCAGACACTTATGTTTATGCCAGCCCTG
CTCTCAGCATGATGGCATGAACAGATGTCCAATCTGCAGGTAGCTCTGGT
CTTTTGAGCCCACCTCCTGAACAGCTCAACCACCCTCAATAGCTCACTCA
TTCAAACTGTGGTGAGCCTCGCTCGCCTCATCATTTCCCCTATAATCGCA
GCCGTATCAAACCATCTCCTATCTCTCTTGCCATTCACCTCTAATCTAAC
ACTAACCCTTCCCTTACCCTTTTACCCTCACCCTTAGGGAAGATATTGAG
ATTACTCAGATTGTATACATCAGCTGAGGAATGTGAGGCCCCTGCAAAGG
GAGTATTATAGCTACCAACTGAATCAAGACCTTTATTGAAGAGTTTGGAG
CTTTCATTTACATCAGGATCAAGAGTTGAGGGTGTTGTGGTACCACCTCT
CAG

Coding sequence (CDS) from alignment at C-australica_Contig_1010:381..2033+

>mRNA_C-australica_Contig_1010.1.1 ID=mRNA_C-australica_Contig_1010.1.1|Name=mRNA_C-australica_Contig_1010.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=186bp|location=Sequence derived from alignment at C-australica_Contig_1010:381..2033+ (Chrysoparadoxa australica CS_1217)
ATGCCGAGAGATGCAAAGGAAGCTTTGCTTTGCAGATCAGAAAATGCAGT
TGAGCAGAAGAGTGTGTTCCTCATCCCCTGCAGACACTTATGTTTATGCC
AGCCCTGCTCTCAGCATGATGGCATGAACAGATGTCCAATCTGCAGGGAA
GATATTGAGATTACTCAGATTGTATACATCAGCTGA