Homology
BLAST of mRNA_C-australica_Contig_101.5.1 vs. uniprot
Match: A0A836C9E1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9E1_9STRA) HSP 1 Score: 213 bits (543), Expect = 2.400e-62 Identity = 120/285 (42.11%), Postives = 152/285 (53.33%), Query Frame = 1 Query: 82 NDPSLYGNVYVADDIVVPSEVYDT-CFGGLNVGTCSPVVEGWLNDNLAAYNEI-ANGAYCASCCSNS--------DPTSDADTWDLECSLPTLAFVRFINLYGYEFRFGRNLMEGDTEVVRCPIKRAGCVYDENDQVVGECGYSGTFLSGYTLVIEVLPTVDSLRSSRKTVVGCQVDVEESDTIPTVLREKIVMQLTFDQGRGIHVGWILLFCFLSLAALAAVVRSLREQHCIVCGNRLICFCSVCSLCRFYGYELPSKGALDLMATKRKEAVNVDLTLTERAAG 906
ND +YG + A V ++V CFGGL++GTC P + WL D +A YN I A G YC SCCSNS +P +ADTWDL C L + +F+N++GYEF F RN GD ++VRC I R C Y + + G C G++L GYTL + V L SRK V C V EE T PT E I+M G + W +L L LA +A R LR HC+VCG+RL+ VC CR+YGY+LPS L L+ KR A D AAG
Sbjct: 22 NDVQIYGGYFDARFAVSYTDVSSKGCFGGLDLGTCKPPSDLWLQDWMAEYNSISAAGTYCLSCCSNSAPYGGTNANPEEEADTWDLTCQLASTTQKKFVNVFGYEFIFLRNSHNGDLDLVRCQIPRTACTYKSDGNLEGTCVSDGSYLHGYTLRVGVRMQGTPLGPSRKQVTWCSVTTEEGRTSPTSFHENIIMVHDNSDGYALSPWWGILLALLFLAVASAAARWLRADHCLVCGHRLVWLRRVCLPCRYYGYQLPSGSVLKLVEQKRAAAAAADEHCGSPAAG 306
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1213 |
| Hectar predicted targeting category | other localisation |
| Exons | 11 |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-05_006100.1 |
| Cds size | 660 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682586742.751751-UTR-C-australica_Contig_101:5754..5891 | 1682586742.751751-UTR-C-australica_Contig_101:5754..5891 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_101 5755..5891 + |
| 1682586742.7628512-UTR-C-australica_Contig_101:5951..6048 | 1682586742.7628512-UTR-C-australica_Contig_101:5951..6048 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_101 5952..6048 + |
| 1682586742.773473-UTR-C-australica_Contig_101:6119..6226 | 1682586742.773473-UTR-C-australica_Contig_101:6119..6226 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_101 6120..6226 + |
| 1682586742.784463-UTR-C-australica_Contig_101:6297..6327 | 1682586742.784463-UTR-C-australica_Contig_101:6297..6327 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_101 6298..6327 + |
| 1682586742.7976036-UTR-C-australica_Contig_101:6407..6423 | 1682586742.7976036-UTR-C-australica_Contig_101:6407..6423 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_101 6408..6423 + |
| 1682586742.87475-UTR-C-australica_Contig_101:7518..7684 | 1682586742.87475-UTR-C-australica_Contig_101:7518..7684 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_101 7519..7684 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682586742.8071067-CDS-C-australica_Contig_101:6423..6498 | 1682586742.8071067-CDS-C-australica_Contig_101:6423..6498 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_101 6424..6498 + |
| 1682586742.8158898-CDS-C-australica_Contig_101:6567..6681 | 1682586742.8158898-CDS-C-australica_Contig_101:6567..6681 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_101 6568..6681 + |
| 1682586742.8265977-CDS-C-australica_Contig_101:6765..6887 | 1682586742.8265977-CDS-C-australica_Contig_101:6765..6887 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_101 6766..6887 + |
| 1682586742.8385577-CDS-C-australica_Contig_101:6959..7044 | 1682586742.8385577-CDS-C-australica_Contig_101:6959..7044 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_101 6960..7044 + |
| 1682586742.8481576-CDS-C-australica_Contig_101:7110..7155 | 1682586742.8481576-CDS-C-australica_Contig_101:7110..7155 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_101 7111..7155 + |
| 1682586742.8584738-CDS-C-australica_Contig_101:7218..7340 | 1682586742.8584738-CDS-C-australica_Contig_101:7218..7340 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_101 7219..7340 + |
| 1682586742.866633-CDS-C-australica_Contig_101:7421..7518 | 1682586742.866633-CDS-C-australica_Contig_101:7421..7518 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_101 7422..7518 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_101.5.1 >prot_C-australica_Contig_101.5.1 ID=prot_C-australica_Contig_101.5.1|Name=mRNA_C-australica_Contig_101.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=220bp
MEGDTEVVRCPIKRAGCVYDENDQVVGECGYSGTFLSGYTLVIEVLPTVD
SLRSSRKTVVGCQVDVEESDTIPTVLREKIVMQLTFDQGRGIHVGWILLF
CFLSLAALAAVVRSLREQHCIVCGNRLICFCSVCSLCRFYGYELPSKGAL
DLMATKRKEAVNVDLTLTERAAGVSATAEKMLGETTARLKHSKLLQKVVP
QMVDTARVDPNYSTAYTGT* back to topmRNA from alignment at C-australica_Contig_101:5755..7684+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-australica_Contig_101.5.1 ID=mRNA_C-australica_Contig_101.5.1|Name=mRNA_C-australica_Contig_101.5.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1930bp|location=Sequence derived from alignment at C-australica_Contig_101:5755..7684+ (Chrysoparadoxa australica CS_1217)
TGCTCTGCTCGGTTGACGCTTCTCTTGCTCCTCTGGGCTCTCGCGGTATT
GCTCTCTGAAGTTGGCTTGGCAGGTGGGGTTAATGATCCCTCCCTTTACG
GCAACGTCTACGTGGCTGATGACATTGTTGTGCCAAGGTAAGGATGCAAG
GCGGTCTCCATCGCCAGCTTCAGCCTCACGCACTCGCTCACCCTAAGCGA
GGTGTATGATACCTGCTTTGGTGGCTTAAATGTGGGGACATGCAGCCCTG
TGGTGGAGGGCTGGCTCAACGACAACCTTGCGGCTTACAATGAGGTGAGA
CAAGAGGCCCTACACAAGAAAGCTCCAAACTGCTGCTCCATGGTATGACT
CTCTTCCTCCCACAGATTGCTAATGGGGCATACTGTGCCAGCTGTTGCAG
CAACTCAGACCCAACCAGCGACGCCGACACCTGGGACCTGGAGTGCAGCC
TGCCAACACTTGCATTCGTGAGGTGCTACATCATTATTCTTTGACATCTG
ACATGTGTGCCAACAGCCGCCTCATGCCATTCTCTGTGCCCAGATTCATC
AACCTCTACGGATATGAGTTCAGGTGCGCACGCCCAAGCAGATGCCATTC
AACCAGCCTCCATCTCAGTGCGTGCTTATTAAAACACCAATGCCACCACG
CAGGTTTGGCCGCAACCTCATGGAAGGCGACACCGAGGTTGTGAGATGCC
CAATCAAGAGGGCAGGGTGTGTGTACGATGAGAATGATCAAGTGGTTAGT
GCTTCAGTTACCCTCCACCTCACCTTTCCTTACCCATTTCCTTCATCACT
GTTAAACCAACAGGTTGGTGAGTGTGGTTATTCAGGCACCTTTCTATCAG
GCTACACTCTTGTCATTGAGGTCTTGCCCACAGTAGACTCACTAAGGTCC
AGTAGAAAAACTGTGGTTGGCTGTCAGGTATATAGTACTGAAAGAAAGAA
ATCAAGTGAAACCCAAGAACGCTCCTTCTTCCCTTACTTTGATTAACGCC
TGCCTTATCAGGTTGATGTGGAGGAATCAGACACCATACCTACGGTGCTG
CGCGAGAAGATCGTCATGCAGCTTACATTCGACCAGGGAAGGGGCATTCA
CGTAGGATGGATTCTGCTCTTCTGCTTCTTGAGGTGGGGCGGGCCACACT
GCACTGCAGCTGTAGCTGTCGTTGTATCCGATACATCTAACCTGCCTCTC
ATCAGCCTTGCAGCACTGGCCGCCGTCGTGCGAAGCCTTAGAGAGCAGCA
CTGCATAGTTTGCGGCAACAGGCTCATATGCTTCTGCTCGGTGAGCTCTC
TTCCGTAAAGAAAGCACCATGCATTGCACTGTTACCTGAATGCTGTTCTT
CTCCAGGTGTGCAGCTTGTGCAGGTTCTATGGTTATGAATTACCAAGCAA
GGTAACTTGTAGCTTGAGGGTCACTGCTGGCACCTGCTGCTTGACCTGAA
CCACTTGCTCACAGGGCGCTCTAGATTTGATGGCCACGAAGCGAAAGGAG
GCCGTGAATGTGGACCTGACACTAACAGAGAGAGCTGCAGGAGTATCCGC
CACAGCGGAAAAGATGTTGGGCGAGACTACTGCAAGGTGAGCTTCTTGTC
TGCCTGTGAGCACGAAGAGTTTTGATTGCCGTCCGCTGTTGCCTCACTTA
CTGTCTGTCTTTGGAAGGTTAAAGCACAGCAAGCTGTTGCAAAAGGTAGT
GCCACAGATGGTAGACACGGCGCGTGTGGACCCCAACTACAGTACAGCCT
ACACAGGTACGTAGCAAACGGAAAAAAGATTTGAGGCTGAGGCATAGTTG
AGGTCAGGTGAAATCCTGTCAGCGCCGTAAAAGCATATCACGTCGTCTCC
TCTTTTGGTCTCTTCCCAGCAAGAGGCACCAAGCGAAAGCGGGAAATTCA
GAACGCTGCCGTCACTTTTGCTGACGAGAT back to topCoding sequence (CDS) from alignment at C-australica_Contig_101:5755..7684+ >mRNA_C-australica_Contig_101.5.1 ID=mRNA_C-australica_Contig_101.5.1|Name=mRNA_C-australica_Contig_101.5.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=660bp|location=Sequence derived from alignment at C-australica_Contig_101:5755..7684+ (Chrysoparadoxa australica CS_1217)
ATGGAAGGCGACACCGAGGTTGTGAGATGCCCAATCAAGAGGGCAGGGTG
TGTGTACGATGAGAATGATCAAGTGGTTGGTGAGTGTGGTTATTCAGGCA
CCTTTCTATCAGGCTACACTCTTGTCATTGAGGTCTTGCCCACAGTAGAC
TCACTAAGGTCCAGTAGAAAAACTGTGGTTGGCTGTCAGGTTGATGTGGA
GGAATCAGACACCATACCTACGGTGCTGCGCGAGAAGATCGTCATGCAGC
TTACATTCGACCAGGGAAGGGGCATTCACGTAGGATGGATTCTGCTCTTC
TGCTTCTTGAGCCTTGCAGCACTGGCCGCCGTCGTGCGAAGCCTTAGAGA
GCAGCACTGCATAGTTTGCGGCAACAGGCTCATATGCTTCTGCTCGGTGT
GCAGCTTGTGCAGGTTCTATGGTTATGAATTACCAAGCAAGGGCGCTCTA
GATTTGATGGCCACGAAGCGAAAGGAGGCCGTGAATGTGGACCTGACACT
AACAGAGAGAGCTGCAGGAGTATCCGCCACAGCGGAAAAGATGTTGGGCG
AGACTACTGCAAGGTTAAAGCACAGCAAGCTGTTGCAAAAGGTAGTGCCA
CAGATGGTAGACACGGCGCGTGTGGACCCCAACTACAGTACAGCCTACAC
AGGTACGTAG back to top
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