mRNA_C-australica_Contig_101.5.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_101.5.1
Unique NamemRNA_C-australica_Contig_101.5.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_101.5.1 vs. uniprot
Match: A0A836C9E1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9E1_9STRA)

HSP 1 Score: 213 bits (543), Expect = 2.400e-62
Identity = 120/285 (42.11%), Postives = 152/285 (53.33%), Query Frame = 1 
Query:   82 NDPSLYGNVYVADDIVVPSEVYDT-CFGGLNVGTCSPVVEGWLNDNLAAYNEI-ANGAYCASCCSNS--------DPTSDADTWDLECSLPTLAFVRFINLYGYEFRFGRNLMEGDTEVVRCPIKRAGCVYDENDQVVGECGYSGTFLSGYTLVIEVLPTVDSLRSSRKTVVGCQVDVEESDTIPTVLREKIVMQLTFDQGRGIHVGWILLFCFLSLAALAAVVRSLREQHCIVCGNRLICFCSVCSLCRFYGYELPSKGALDLMATKRKEAVNVDLTLTERAAG 906
            ND  +YG  + A   V  ++V    CFGGL++GTC P  + WL D +A YN I A G YC SCCSNS        +P  +ADTWDL C L +    +F+N++GYEF F RN   GD ++VRC I R  C Y  +  + G C   G++L GYTL + V      L  SRK V  C V  EE  T PT   E I+M      G  +   W +L   L LA  +A  R LR  HC+VCG+RL+    VC  CR+YGY+LPS   L L+  KR  A   D      AAG
Sbjct:   22 NDVQIYGGYFDARFAVSYTDVSSKGCFGGLDLGTCKPPSDLWLQDWMAEYNSISAAGTYCLSCCSNSAPYGGTNANPEEEADTWDLTCQLASTTQKKFVNVFGYEFIFLRNSHNGDLDLVRCQIPRTACTYKSDGNLEGTCVSDGSYLHGYTLRVGVRMQGTPLGPSRKQVTWCSVTTEEGRTSPTSFHENIIMVHDNSDGYALSPWWGILLALLFLAVASAAARWLRADHCLVCGHRLVWLRRVCLPCRYYGYQLPSGSVLKLVEQKRAAAAAADEHCGSPAAG 306
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_101.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C9E1_9STRA2.400e-6242.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_101contigC-australica_Contig_101:5755..7684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1213
Hectar predicted targeting categoryother localisation
Exons11
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_006100.1
Cds size660
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_101.5.1prot_C-australica_Contig_101.5.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_101 6424..7518 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586742.751751-UTR-C-australica_Contig_101:5754..58911682586742.751751-UTR-C-australica_Contig_101:5754..5891Chrysoparadoxa australica CS_1217UTRC-australica_Contig_101 5755..5891 +
1682586742.7628512-UTR-C-australica_Contig_101:5951..60481682586742.7628512-UTR-C-australica_Contig_101:5951..6048Chrysoparadoxa australica CS_1217UTRC-australica_Contig_101 5952..6048 +
1682586742.773473-UTR-C-australica_Contig_101:6119..62261682586742.773473-UTR-C-australica_Contig_101:6119..6226Chrysoparadoxa australica CS_1217UTRC-australica_Contig_101 6120..6226 +
1682586742.784463-UTR-C-australica_Contig_101:6297..63271682586742.784463-UTR-C-australica_Contig_101:6297..6327Chrysoparadoxa australica CS_1217UTRC-australica_Contig_101 6298..6327 +
1682586742.7976036-UTR-C-australica_Contig_101:6407..64231682586742.7976036-UTR-C-australica_Contig_101:6407..6423Chrysoparadoxa australica CS_1217UTRC-australica_Contig_101 6408..6423 +
1682586742.87475-UTR-C-australica_Contig_101:7518..76841682586742.87475-UTR-C-australica_Contig_101:7518..7684Chrysoparadoxa australica CS_1217UTRC-australica_Contig_101 7519..7684 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586742.8071067-CDS-C-australica_Contig_101:6423..64981682586742.8071067-CDS-C-australica_Contig_101:6423..6498Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 6424..6498 +
1682586742.8158898-CDS-C-australica_Contig_101:6567..66811682586742.8158898-CDS-C-australica_Contig_101:6567..6681Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 6568..6681 +
1682586742.8265977-CDS-C-australica_Contig_101:6765..68871682586742.8265977-CDS-C-australica_Contig_101:6765..6887Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 6766..6887 +
1682586742.8385577-CDS-C-australica_Contig_101:6959..70441682586742.8385577-CDS-C-australica_Contig_101:6959..7044Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 6960..7044 +
1682586742.8481576-CDS-C-australica_Contig_101:7110..71551682586742.8481576-CDS-C-australica_Contig_101:7110..7155Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 7111..7155 +
1682586742.8584738-CDS-C-australica_Contig_101:7218..73401682586742.8584738-CDS-C-australica_Contig_101:7218..7340Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 7219..7340 +
1682586742.866633-CDS-C-australica_Contig_101:7421..75181682586742.866633-CDS-C-australica_Contig_101:7421..7518Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 7422..7518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_101.5.1

>prot_C-australica_Contig_101.5.1 ID=prot_C-australica_Contig_101.5.1|Name=mRNA_C-australica_Contig_101.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=220bp
MEGDTEVVRCPIKRAGCVYDENDQVVGECGYSGTFLSGYTLVIEVLPTVD
SLRSSRKTVVGCQVDVEESDTIPTVLREKIVMQLTFDQGRGIHVGWILLF
CFLSLAALAAVVRSLREQHCIVCGNRLICFCSVCSLCRFYGYELPSKGAL
DLMATKRKEAVNVDLTLTERAAGVSATAEKMLGETTARLKHSKLLQKVVP
QMVDTARVDPNYSTAYTGT*
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mRNA from alignment at C-australica_Contig_101:5755..7684+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_101.5.1 ID=mRNA_C-australica_Contig_101.5.1|Name=mRNA_C-australica_Contig_101.5.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1930bp|location=Sequence derived from alignment at C-australica_Contig_101:5755..7684+ (Chrysoparadoxa australica CS_1217)
TGCTCTGCTCGGTTGACGCTTCTCTTGCTCCTCTGGGCTCTCGCGGTATT
GCTCTCTGAAGTTGGCTTGGCAGGTGGGGTTAATGATCCCTCCCTTTACG
GCAACGTCTACGTGGCTGATGACATTGTTGTGCCAAGGTAAGGATGCAAG
GCGGTCTCCATCGCCAGCTTCAGCCTCACGCACTCGCTCACCCTAAGCGA
GGTGTATGATACCTGCTTTGGTGGCTTAAATGTGGGGACATGCAGCCCTG
TGGTGGAGGGCTGGCTCAACGACAACCTTGCGGCTTACAATGAGGTGAGA
CAAGAGGCCCTACACAAGAAAGCTCCAAACTGCTGCTCCATGGTATGACT
CTCTTCCTCCCACAGATTGCTAATGGGGCATACTGTGCCAGCTGTTGCAG
CAACTCAGACCCAACCAGCGACGCCGACACCTGGGACCTGGAGTGCAGCC
TGCCAACACTTGCATTCGTGAGGTGCTACATCATTATTCTTTGACATCTG
ACATGTGTGCCAACAGCCGCCTCATGCCATTCTCTGTGCCCAGATTCATC
AACCTCTACGGATATGAGTTCAGGTGCGCACGCCCAAGCAGATGCCATTC
AACCAGCCTCCATCTCAGTGCGTGCTTATTAAAACACCAATGCCACCACG
CAGGTTTGGCCGCAACCTCATGGAAGGCGACACCGAGGTTGTGAGATGCC
CAATCAAGAGGGCAGGGTGTGTGTACGATGAGAATGATCAAGTGGTTAGT
GCTTCAGTTACCCTCCACCTCACCTTTCCTTACCCATTTCCTTCATCACT
GTTAAACCAACAGGTTGGTGAGTGTGGTTATTCAGGCACCTTTCTATCAG
GCTACACTCTTGTCATTGAGGTCTTGCCCACAGTAGACTCACTAAGGTCC
AGTAGAAAAACTGTGGTTGGCTGTCAGGTATATAGTACTGAAAGAAAGAA
ATCAAGTGAAACCCAAGAACGCTCCTTCTTCCCTTACTTTGATTAACGCC
TGCCTTATCAGGTTGATGTGGAGGAATCAGACACCATACCTACGGTGCTG
CGCGAGAAGATCGTCATGCAGCTTACATTCGACCAGGGAAGGGGCATTCA
CGTAGGATGGATTCTGCTCTTCTGCTTCTTGAGGTGGGGCGGGCCACACT
GCACTGCAGCTGTAGCTGTCGTTGTATCCGATACATCTAACCTGCCTCTC
ATCAGCCTTGCAGCACTGGCCGCCGTCGTGCGAAGCCTTAGAGAGCAGCA
CTGCATAGTTTGCGGCAACAGGCTCATATGCTTCTGCTCGGTGAGCTCTC
TTCCGTAAAGAAAGCACCATGCATTGCACTGTTACCTGAATGCTGTTCTT
CTCCAGGTGTGCAGCTTGTGCAGGTTCTATGGTTATGAATTACCAAGCAA
GGTAACTTGTAGCTTGAGGGTCACTGCTGGCACCTGCTGCTTGACCTGAA
CCACTTGCTCACAGGGCGCTCTAGATTTGATGGCCACGAAGCGAAAGGAG
GCCGTGAATGTGGACCTGACACTAACAGAGAGAGCTGCAGGAGTATCCGC
CACAGCGGAAAAGATGTTGGGCGAGACTACTGCAAGGTGAGCTTCTTGTC
TGCCTGTGAGCACGAAGAGTTTTGATTGCCGTCCGCTGTTGCCTCACTTA
CTGTCTGTCTTTGGAAGGTTAAAGCACAGCAAGCTGTTGCAAAAGGTAGT
GCCACAGATGGTAGACACGGCGCGTGTGGACCCCAACTACAGTACAGCCT
ACACAGGTACGTAGCAAACGGAAAAAAGATTTGAGGCTGAGGCATAGTTG
AGGTCAGGTGAAATCCTGTCAGCGCCGTAAAAGCATATCACGTCGTCTCC
TCTTTTGGTCTCTTCCCAGCAAGAGGCACCAAGCGAAAGCGGGAAATTCA
GAACGCTGCCGTCACTTTTGCTGACGAGAT
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Coding sequence (CDS) from alignment at C-australica_Contig_101:5755..7684+

>mRNA_C-australica_Contig_101.5.1 ID=mRNA_C-australica_Contig_101.5.1|Name=mRNA_C-australica_Contig_101.5.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=660bp|location=Sequence derived from alignment at C-australica_Contig_101:5755..7684+ (Chrysoparadoxa australica CS_1217)
ATGGAAGGCGACACCGAGGTTGTGAGATGCCCAATCAAGAGGGCAGGGTG
TGTGTACGATGAGAATGATCAAGTGGTTGGTGAGTGTGGTTATTCAGGCA
CCTTTCTATCAGGCTACACTCTTGTCATTGAGGTCTTGCCCACAGTAGAC
TCACTAAGGTCCAGTAGAAAAACTGTGGTTGGCTGTCAGGTTGATGTGGA
GGAATCAGACACCATACCTACGGTGCTGCGCGAGAAGATCGTCATGCAGC
TTACATTCGACCAGGGAAGGGGCATTCACGTAGGATGGATTCTGCTCTTC
TGCTTCTTGAGCCTTGCAGCACTGGCCGCCGTCGTGCGAAGCCTTAGAGA
GCAGCACTGCATAGTTTGCGGCAACAGGCTCATATGCTTCTGCTCGGTGT
GCAGCTTGTGCAGGTTCTATGGTTATGAATTACCAAGCAAGGGCGCTCTA
GATTTGATGGCCACGAAGCGAAAGGAGGCCGTGAATGTGGACCTGACACT
AACAGAGAGAGCTGCAGGAGTATCCGCCACAGCGGAAAAGATGTTGGGCG
AGACTACTGCAAGGTTAAAGCACAGCAAGCTGTTGCAAAAGGTAGTGCCA
CAGATGGTAGACACGGCGCGTGTGGACCCCAACTACAGTACAGCCTACAC
AGGTACGTAG
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