mRNA_C-australica_Contig_1008.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1008.1.1
Unique NamemRNA_C-australica_Contig_1008.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1008.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1008contigC-australica_Contig_1008:4303..6370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1167
Hectar predicted targeting categoryother localisation
Exons8
Cds size936
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1008.1.1prot_C-australica_Contig_1008.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1008 4445..6281 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586741.3822727-UTR-C-australica_Contig_1008:4302..44441682586741.3822727-UTR-C-australica_Contig_1008:4302..4444Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1008 4303..4444 +
1682586741.4599664-UTR-C-australica_Contig_1008:6281..63701682586741.4599664-UTR-C-australica_Contig_1008:6281..6370Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1008 6282..6370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586741.3935068-CDS-C-australica_Contig_1008:4444..45171682586741.3935068-CDS-C-australica_Contig_1008:4444..4517Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1008 4445..4517 +
1682586741.4009979-CDS-C-australica_Contig_1008:4602..47681682586741.4009979-CDS-C-australica_Contig_1008:4602..4768Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1008 4603..4768 +
1682586741.4084554-CDS-C-australica_Contig_1008:4852..49311682586741.4084554-CDS-C-australica_Contig_1008:4852..4931Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1008 4853..4931 +
1682586741.4160485-CDS-C-australica_Contig_1008:5031..51291682586741.4160485-CDS-C-australica_Contig_1008:5031..5129Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1008 5032..5129 +
1682586741.4243581-CDS-C-australica_Contig_1008:5427..55381682586741.4243581-CDS-C-australica_Contig_1008:5427..5538Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1008 5428..5538 +
1682586741.4330084-CDS-C-australica_Contig_1008:5611..57491682586741.4330084-CDS-C-australica_Contig_1008:5611..5749Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1008 5612..5749 +
1682586741.4418569-CDS-C-australica_Contig_1008:5936..60791682586741.4418569-CDS-C-australica_Contig_1008:5936..6079Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1008 5937..6079 +
1682586741.4508417-CDS-C-australica_Contig_1008:6153..62811682586741.4508417-CDS-C-australica_Contig_1008:6153..6281Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1008 6154..6281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1008.1.1

>prot_C-australica_Contig_1008.1.1 ID=prot_C-australica_Contig_1008.1.1|Name=mRNA_C-australica_Contig_1008.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=312bp
MKGLEVDTGAAAPTHRQIMSGTVLNIGSPRAAQRMGDLIPHFDDNEEGGS
GTHDRLAKLLQDKRSMEVARMPLGALPVQWNNVTFDGTSRAVPDHVNLML
ELILSKGIMVKKFARNYPYKPQTRRLMLASSPAQILLARPNQLVINRNLK
HINVTDIEQLQLGSAMTLPRTQVFERSSNHVTCGDCTLALLGKGNTRSLD
LEMPSMLDRDELANALALFIDRSRPRIASPSQGGDVKRASRAAWAQVQGS
DTAARKHLSFAAGPLSPTPGYAQGECMTDVESTPIDKSPRDEPTGAKGVR
LFFPDTPDDKG*
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mRNA from alignment at C-australica_Contig_1008:4303..6370+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1008.1.1 ID=mRNA_C-australica_Contig_1008.1.1|Name=mRNA_C-australica_Contig_1008.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2068bp|location=Sequence derived from alignment at C-australica_Contig_1008:4303..6370+ (Chrysoparadoxa australica CS_1217)
GTTCAAGTTGGGCGCGTCAAGAATCCCTCGCTCTCTTCCCATCCTCCCAT
TTCCCCAATAGCTCTCATTTCATCATTTCTTTTTCTACTTAACGCGTCTT
TAAAGCCAAGAACTAAGCTCTTACCAAGGGCGAGGGGGCAATATGAAGGG
CCTGGAGGTAGACACAGGGGCGGCAGCCCCTACTCACAGGCAGATCATGA
GCGGAACCGTCCTAAGTGAGTTTCGCCCCCTTCTTCTCTTCAGACCGCCT
CCATCCATGCACCTCCACATACCCCCTCAACCTCCAGCTCTTTTGCCCAG
ATATCGGCTCTCCGAGGGCTGCCCAGAGGATGGGTGACCTGATCCCGCAC
TTTGATGACAACGAGGAGGGTGGAAGTGGTACGCATGACAGGCTCGCCAA
GCTGCTGCAAGATAAGAGATCAATGGAAGTGGCAAGAATGCCGCTGGGAG
CTCTGCCCGTACAGTGGTGGGTGAAAAACTGATACCGCCATGAGCGAGTC
AAGTCCCACTACCCTCTCACCCATACATTCCTTTGGCTTTGTGCCCTTAG
GAATAATGTCACCTTTGACGGCACCAGCAGAGCTGTCCCTGACCACGTCA
ACCTCATGCTGGAGTTGATACTCAGCAAGGCAAGCACAAGCTTCAATACT
TGAGCGTGCCTTCATTTGACTTTGACATTAATCGCCTGGCCTTGAAAAGC
CTAATATTCACCCTGCCAAACTATGCCAGGGCATTATGGTGAAGAAATTT
GCGCGCAACTACCCCTACAAGCCCCAGACCCGGCGGCTCATGCTGGCCTC
CTCACCGGCACAAATACTACTCGCAAGGTGTGGGACGCCTAGGTCACCCT
CCACCAGTAGTAGATGGATCCCATGCTCTCCCACGCTACCAGATAGAACC
TGGTTGGATCGGTTTACATGTCACGAGCCCTGCCATTCTTCTACTCAAGC
CTGCCTTTACACATACCAGTACCACTGGTCATAACTAGGTCTTGCATGTA
GCGCCCTTGCCACAACCGTGGACACTGCTCCCTCCTCACTCAACTACAAT
TCCAGATGCCGCTCCGGCGTCCCACTGCTTGCTGCACCTCTAGCTCATTG
CACTGATTCTCTCATTGCCCCCCAGGCCCAACCAGTTGGTGATAAACCGC
AATCTAAAGCACATCAACGTCACTGATATTGAGCAGCTGCAGCTCGGATC
GGCAATGACACTGCCTAGAACGCAAGTGTTTGAGAGGTAAGCTCCCACAG
TTCAAAGTCCAAATCATGGTGCCCAACCCCTCACTACATTATGATACCCT
ACCCCTCAGAAGCTCAAACCATGTGACTTGTGGTGACTGCACGCTTGCAC
TGTTGGGCAAGGGGAACACACGTTCATTGGACCTGGAGATGCCCTCCATG
CTAGACAGGGATGAGCTTGCCAACGCATTGGCATTGTTCATTGACAGGTA
TGTGCGCCTTTTGCTGCTTCTGTCGGATCCAACTGCTCACCTGGGACCAG
CAAAGAAGTAGCATGGCCGCAAGGCAGCCCATACAAACTCAAGCAAACTG
CTGGAGAGGAGCAGCTCTTGGCTTTGGAGCACCGCTTCTCTCACCGCTGG
CACTACAATAAAGCCTTGCCTGGCCCGCCTCCAGATCAAGGCCGAGGATT
GCATCACCTTCGCAGGGAGGCGACGTCAAGCGAGCGAGCAGGGCAGCATG
GGCACAGGTGCAAGGAAGTGACACGGCTGCAAGGAAGCACCTGTCATTCG
CGGCTGGACCTTTATCGCCAACGCCAGGTGAGCTTCACTGATCAGCTCTG
CACCTTGGCGGTCTCACTGCTCAGTCTTATGACCTCTTTCATTCACTGCA
GGGTATGCGCAAGGGGAATGCATGACTGATGTGGAGTCAACGCCTATAGA
TAAATCGCCACGAGACGAGCCCACTGGAGCGAAAGGGGTGCGGCTATTCT
TCCCAGACACCCCGGATGACAAAGGCTAAGGCTCTGGATGAGTTGATGGC
GTGTGGGTGTGTCATCACGGGTGGCACCTTGGTATGGGAAGCTCAAGCTG
TATCATGTATAGAGTAGC
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Coding sequence (CDS) from alignment at C-australica_Contig_1008:4303..6370+

>mRNA_C-australica_Contig_1008.1.1 ID=mRNA_C-australica_Contig_1008.1.1|Name=mRNA_C-australica_Contig_1008.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=936bp|location=Sequence derived from alignment at C-australica_Contig_1008:4303..6370+ (Chrysoparadoxa australica CS_1217)
ATGAAGGGCCTGGAGGTAGACACAGGGGCGGCAGCCCCTACTCACAGGCA
GATCATGAGCGGAACCGTCCTAAATATCGGCTCTCCGAGGGCTGCCCAGA
GGATGGGTGACCTGATCCCGCACTTTGATGACAACGAGGAGGGTGGAAGT
GGTACGCATGACAGGCTCGCCAAGCTGCTGCAAGATAAGAGATCAATGGA
AGTGGCAAGAATGCCGCTGGGAGCTCTGCCCGTACAGTGGAATAATGTCA
CCTTTGACGGCACCAGCAGAGCTGTCCCTGACCACGTCAACCTCATGCTG
GAGTTGATACTCAGCAAGGGCATTATGGTGAAGAAATTTGCGCGCAACTA
CCCCTACAAGCCCCAGACCCGGCGGCTCATGCTGGCCTCCTCACCGGCAC
AAATACTACTCGCAAGGCCCAACCAGTTGGTGATAAACCGCAATCTAAAG
CACATCAACGTCACTGATATTGAGCAGCTGCAGCTCGGATCGGCAATGAC
ACTGCCTAGAACGCAAGTGTTTGAGAGAAGCTCAAACCATGTGACTTGTG
GTGACTGCACGCTTGCACTGTTGGGCAAGGGGAACACACGTTCATTGGAC
CTGGAGATGCCCTCCATGCTAGACAGGGATGAGCTTGCCAACGCATTGGC
ATTGTTCATTGACAGATCAAGGCCGAGGATTGCATCACCTTCGCAGGGAG
GCGACGTCAAGCGAGCGAGCAGGGCAGCATGGGCACAGGTGCAAGGAAGT
GACACGGCTGCAAGGAAGCACCTGTCATTCGCGGCTGGACCTTTATCGCC
AACGCCAGGGTATGCGCAAGGGGAATGCATGACTGATGTGGAGTCAACGC
CTATAGATAAATCGCCACGAGACGAGCCCACTGGAGCGAAAGGGGTGCGG
CTATTCTTCCCAGACACCCCGGATGACAAAGGCTAA
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