mRNA_C-australica_Contig_10034.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10034.1.1
Unique NamemRNA_C-australica_Contig_10034.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10034.1.1 vs. uniprot
Match: UPI001C08E756 (enoyl-CoA hydratase/isomerase family protein n=1 Tax=Roseovarius nubinhibens TaxID=314263 RepID=UPI001C08E756)

HSP 1 Score: 501 bits (1291), Expect = 2.670e-178
Identity = 248/280 (88.57%), Postives = 264/280 (94.29%), Query Frame = 1
Query:    1 VDGHGIAEMCWDDPYLKGNVFSTEAIAEWVALVEQVASDPSVRGVLITSGKASFHAGADLSMVSGFFGMSTEDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVSQARSLGQLTDVVPAGALRDAARRWLLDNPAAEQPWMARGYRGPSASEIERYFHALNAGLTRDGMADRPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTRNLSVRQTLQAR 840
            VDGHGIAE+ WDDP  K NVFSTEAIA+W ALV+++ASD  +RGVLITSGK SFHAGADL MV GFF MS EDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQ+VTADMLQGATYDVS+A+SLG LTDVVPAGALRDAARRWLLD+P AEQPWMARGYRGPSA+E+ER+FHALNAGLTRDG+ADRPEQ+LIAEAVYHGLQMPIEPALRLEVRRFIELTR+ SVR TLQAR
Sbjct:    9 VDGHGIAELSWDDPDRKVNVFSTEAIAQWAALVDELASDTDIRGVLITSGKPSFHAGADLRMVGGFFDMSAEDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQKVTADMLQGATYDVSEAKSLGLLTDVVPAGALRDAARRWLLDSPNAEQPWMARGYRGPSAAELERHFHALNAGLTRDGVADRPEQRLIAEAVYHGLQMPIEPALRLEVRRFIELTRDPSVRHTLQAR 288          
BLAST of mRNA_C-australica_Contig_10034.1.1 vs. uniprot
Match: A0A222E2Q4_9RHOB (Fatty acid oxidation complex subunit alpha n=3 Tax=Rhodobacterales TaxID=204455 RepID=A0A222E2Q4_9RHOB)

HSP 1 Score: 500 bits (1288), Expect = 7.640e-178
Identity = 250/280 (89.29%), Postives = 261/280 (93.21%), Query Frame = 1
Query:    1 VDGHGIAEMCWDDPYLKGNVFSTEAIAEWVALVEQVASDPSVRGVLITSGKASFHAGADLSMVSGFFGMSTEDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVSQARSLGQLTDVVPAGALRDAARRWLLDNPAAEQPWMARGYRGPSASEIERYFHALNAGLTRDGMADRPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTRNLSVRQTLQAR 840
            VDGHGIAE+ WDDP  K NVFST+AI+EWV LV+QVASDPSVRGVLITSGKASFHAGADL MV  FF +  EDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLM GFGGTQRLTRLAPWQRVT DMLQG TYDVS+ARSLG LTDVVPAGALRDAARRWLLDNPAAEQ WM RGYRGP+A EIERYFHALNAGLTRDG+A+RPEQ+LIAEA+YHGLQMPIEPALRLEVRRFIELTRN SVRQTLQAR
Sbjct:    9 VDGHGIAELRWDDPDRKVNVFSTDAISEWVGLVDQVASDPSVRGVLITSGKASFHAGADLRMVGEFFDIPAEDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMTGFGGTQRLTRLAPWQRVTGDMLQGTTYDVSEARSLGLLTDVVPAGALRDAARRWLLDNPAAEQRWMVRGYRGPTAPEIERYFHALNAGLTRDGVAERPEQRLIAEAIYHGLQMPIEPALRLEVRRFIELTRNPSVRQTLQAR 288          
BLAST of mRNA_C-australica_Contig_10034.1.1 vs. uniprot
Match: A0A231V1U6_9HYPH (Uncharacterized protein n=1 Tax=Notoacmeibacter marinus TaxID=1876515 RepID=A0A231V1U6_9HYPH)

HSP 1 Score: 477 bits (1227), Expect = 1.500e-168
Identity = 234/280 (83.57%), Postives = 252/280 (90.00%), Query Frame = 1
Query:    1 VDGHGIAEMCWDDPYLKGNVFSTEAIAEWVALVEQVASDPSVRGVLITSGKASFHAGADLSMVSGFFGMSTEDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVSQARSLGQLTDVVPAGALRDAARRWLLDNPAAEQPWMARGYRGPSASEIERYFHALNAGLTRDGMADRPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTRNLSVRQTLQAR 840
            VDGHGIAE+CW DP  K NVFS EAI+EW A+VEQVA DP++RGVLITSGK SFHAGADL MV GF  MS E+LW+VMARVKDS YRLETCGKPVAAAINGHCLGGGFEMAL+ HARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPW+RVT DML G TYDVS+ARSLG LTD+VP  ALRD ARRWLLDN AA QPWMARGYRGP+A +IE++FHALNAGLTRDG+ADRPEQ+LIAEAVYHGLQMPIEPALRLEVRRF+ELTR  SVRQ LQAR
Sbjct:    9 VDGHGIAELCWADPDRKVNVFSAEAISEWAAMVEQVAFDPAIRGVLITSGKPSFHAGADLRMVGGFSDMSVEELWTVMARVKDSFYRLETCGKPVAAAINGHCLGGGFEMALSTHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWRRVTPDMLHGVTYDVSEARSLGLLTDIVPEDALRDVARRWLLDNSAAHQPWMARGYRGPAAPDIEQFFHALNAGLTRDGVADRPEQRLIAEAVYHGLQMPIEPALRLEVRRFVELTRIPSVRQALQAR 288          
BLAST of mRNA_C-australica_Contig_10034.1.1 vs. uniprot
Match: UPI0009801A64 (enoyl-CoA hydratase/isomerase family protein n=1 Tax=Roseibium aggregatum TaxID=187304 RepID=UPI0009801A64)

HSP 1 Score: 423 bits (1088), Expect = 2.190e-147
Identity = 206/280 (73.57%), Postives = 232/280 (82.86%), Query Frame = 1
Query:    1 VDGHGIAEMCWDDPYLKGNVFSTEAIAEWVALVEQVASDPSVRGVLITSGKASFHAGADLSMVSGFFGMSTEDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVSQARSLGQLTDVVPAGALRDAARRWLLDNPAAEQPWMARGYRGPSASEIERYFHALNAGLTRDGMADRPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTRNLSVRQTLQAR 840
             D +GIAE+ WDDP  K NVFS EAI EWV LVE+VA D ++ GVL+TSGK+ FHAGADL M+ GFF M+ +DLWSVMAR+KDS YRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVD PA K+GLPEAGLGLMPGFGGTQR+TRLAPWQR   DML GATYDV+ A+SLG + +VV   ALRD A  WLL NP A+QPWM RGYRGP  +  ER+FH LNAGL RDG+  RPEQ+LIAEAVYHGLQMPIEPALRLEVRRFIEL +  SV++T+Q R
Sbjct:    9 TDAYGIAELYWDDPQRKVNVFSAEAIQEWVTLVERVAVDDTIHGVLLTSGKSMFHAGADLRMIGGFFDMTPKDLWSVMARIKDSFYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDVPAAKIGLPEAGLGLMPGFGGTQRMTRLAPWQRAVEDMLAGATYDVTTAKSLGLVREVVSPDALRDTAHAWLLANPEAQQPWMVRGYRGPGGATFERFFHKLNAGLIRDGVEGRPEQRLIAEAVYHGLQMPIEPALRLEVRRFIELVQIPSVKETMQRR 288          
BLAST of mRNA_C-australica_Contig_10034.1.1 vs. uniprot
Match: A0A418ZYD0_9RHOB (Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Paracoccus aestuarii TaxID=453842 RepID=A0A418ZYD0_9RHOB)

HSP 1 Score: 358 bits (918), Expect = 1.640e-121
Identity = 179/281 (63.70%), Postives = 212/281 (75.44%), Query Frame = 1
Query:    1 VDGHGIAEMCWDDPYLKGNVFSTEAIAEWVALVEQVASDPSVRGVLITSGKASFHAGADLSMVSGFFGMSTEDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVSQARSLGQLTDVVPAGALRDAARRWLLDNPAAEQPWMARGYRGP-SASEIERYFHALNAGLTRDGMADRPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTRNLSVRQTLQAR 840
            VD  GIAE+ WDDP  K NVFS   IAE+ A+V ++  D ++RGVLITSGK SFHAGADL+MVSGFF MS  DLW +M+ V  S YRLETCGKPV AA+NGHCLGGGFEMALAAHARF  DDP I++GLPEAGLGLMPGFGGTQR+ R+APW++   D+++G  +D   A SLG +  VVPA  L  AAR WL     A+QPW  RGYR P +A++ E+YF ALNA L RDG ADRPE++LIAE +YHGLQ+PIEPALR EVR FIEL     VR T++ R
Sbjct:    9 VDAEGIAELRWDDPARKVNVFSAAEIAEFAAIVTRIRDDNAIRGVLITSGKGSFHAGADLNMVSGFFDMSAADLWEIMSLVMTSFYRLETCGKPVVAALNGHCLGGGFEMALAAHARFVADDPRIRIGLPEAGLGLMPGFGGTQRMARIAPWKQAAEDIMEGRCHDPQTALSLGLVGGVVPADGLEAAARDWLWCTCEAKQPWAVRGYRPPGAAADFEQYFTALNAALIRDGAADRPERRLIAETLYHGLQLPIEPALRHEVRCFIELAGMPDVRSTMRQR 289          
BLAST of mRNA_C-australica_Contig_10034.1.1 vs. uniprot
Match: A0A348WDB0_9RHOB (3-hydroxyacyl-CoA dehydrogenase (Fragment) n=1 Tax=Roseovarius nubinhibens TaxID=314263 RepID=A0A348WDB0_9RHOB)

HSP 1 Score: 348 bits (892), Expect = 4.010e-119
Identity = 174/186 (93.55%), Postives = 181/186 (97.31%), Query Frame = 1
Query:  283 VAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVSQARSLGQLTDVVPAGALRDAARRWLLDNPAAEQPWMARGYRGPSASEIERYFHALNAGLTRDGMADRPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTRNLSVRQTLQAR 840
            VAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVS+A+SLG LTDVVPAGALRDAARRWLLD+P AEQPWMARGYRGPSA+EIER+FHALNAGLTRDG+A RPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTR+ SVR TLQAR
Sbjct:    1 VAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVSEAKSLGLLTDVVPAGALRDAARRWLLDSPNAEQPWMARGYRGPSAAEIERHFHALNAGLTRDGVAGRPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTRDPSVRHTLQAR 186          
BLAST of mRNA_C-australica_Contig_10034.1.1 vs. uniprot
Match: UPI00065C9CA9 (enoyl-CoA hydratase/isomerase family protein n=1 Tax=Sphingomonas sp. MEA3-1 TaxID=1647414 RepID=UPI00065C9CA9)

HSP 1 Score: 350 bits (898), Expect = 2.060e-118
Identity = 175/281 (62.28%), Postives = 212/281 (75.44%), Query Frame = 1
Query:    1 VDGHGIAEMCWDDPYLKGNVFSTEAIAEWVALVEQVASDPSVRGVLITSGKASFHAGADLSMVSGFFGMSTEDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVSQARSLGQLTDVVPAGALRDAARRWLLDNPAAEQPWMARGYRGPSASE-IERYFHALNAGLTRDGMADRPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTRNLSVRQTLQAR 840
            VD  GIAE+ WD+P  K NVFS EAI ++ ALV ++ SD S+RGV+ITSGK+ FHAGADL+MVSGFF +S  +LW +M+++  S Y+LETCGKPV AA+NGHCLGGGFEMALAAHARFAVDDP I++GLPEAGLGLMPGFGGTQR+ R+APWQ+   D+++G  YD   A SLG +  VVPA  L  AAR WL     A QPWM RGYR P AS   + +F   NAGL+RDG+   PE++LIAE +YHGLQ+PIEPALR EVR FIEL     VR T++ R
Sbjct:    9 VDAAGIAELRWDNPARKVNVFSAEAIEDFAALVARITSDDSIRGVMITSGKSVFHAGADLNMVSGFFDLSPAELWQIMSKIMASFYQLETCGKPVVAALNGHCLGGGFEMALAAHARFAVDDPKIRIGLPEAGLGLMPGFGGTQRMARIAPWQQAARDIIEGRCYDPQTAASLGLVDGVVPAEGLEAAARDWLFCAQDAAQPWMRRGYRPPGASAGYDDFFAVFNAGLSRDGIDAWPERRLIAETLYHGLQLPIEPALRHEVRCFIELAGMPEVRHTMRQR 289          
BLAST of mRNA_C-australica_Contig_10034.1.1 vs. uniprot
Match: A0A840STD9_9RHOB (3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Amaricoccus macauensis TaxID=57001 RepID=A0A840STD9_9RHOB)

HSP 1 Score: 263 bits (671), Expect = 2.500e-79
Identity = 140/283 (49.47%), Postives = 182/283 (64.31%), Query Frame = 1
Query:    1 VDGHGIAEMCWDDPYLKGNVFSTEAIAEWVALVEQVASDPSVRGVLITSGKASFHAGADLSMVSGFFGMSTEDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVSQARSLGQLTDVVPAGALRDAARRWLLDN----PAAEQPWMARGYRGPSASE-IERYFHALNAGLTRDGMADRPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTRNLSVRQTLQ 834
            V+  G+A + W+ P    NVFS  A+A + A V ++ASDP + G ++ S   +FHAGADL  V   F  S + +W+ +  V  S  RLETCGKPV AAINGH LGGGFEMALA H R   DDPAI+LGLPE+ +GLMPGFGGTQRL RL  ++    DM++G T+    A +LG + +VV   ALR+ AR+ +L+       A QPW  RG   P+A      +F   NA  TR    +RP ++L+AEAVYHGLQMPI+PALRLE RRF+EL+R  + R  L+
Sbjct:   10 VESDGVATLLWE-PQGPMNVFSEAALASFDAAVGRIASDPVIVGAIVASSGRAFHAGADLDFVMELFDRSPQQVWAFLEAVMTSFRRLETCGKPVVAAINGHALGGGFEMALACHGRVVADDPAIRLGLPESAIGLMPGFGGTQRLPRLIEYRSAVRDMVKGRTWSPRDALALGAVDEVVAPDALRETARKRVLERLGNKTGATQPWDRRGTISPAADPGFAGFFTEFNAAQTRANWGNRPAERLVAEAVYHGLQMPIDPALRLEARRFVELSRIPATRAVLR 291          
BLAST of mRNA_C-australica_Contig_10034.1.1 vs. uniprot
Match: UPI001EE1178E (3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein n=1 Tax=unclassified Xanthobacter TaxID=2623496 RepID=UPI001EE1178E)

HSP 1 Score: 212 bits (539), Expect = 4.020e-60
Identity = 116/282 (41.13%), Postives = 167/282 (59.22%), Query Frame = 1
Query:    1 VDGHGIAEMCWDDPYLKGNVFSTEAIAEWVALVEQVASDPSVRGVLITSGKASFHAGADLSMVSGFFGMSTEDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVSQARSLGQLTDVVPAGALRDAARRWLLDNPAAEQPWMARGYRGPSAS----EIERYFHALNAGLTRDGMADRPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTRNLSVRQTLQ 834
            +D  GIA + WD P    NV S +A  +++A+ E   +DP+V+GV+ITS K  F AGADL+++  F G    ++   M+ ++D L R+ET GKPV AA+NG  LGGG E+ LA H R AVD P    GLPEAGLGL+PG GG+QRL RL   +     ML G+    ++ ++LG + ++V A  L  AAR W+L +P A QPW   G+  P       E+ R+F AL++ +  D   + P  + I   VY GL++PI+  L +E R  +EL R    + T++
Sbjct:    6 LDADGIATVTWDLPGRPVNVLSMDARLKFIAVTEAALNDPAVKGVIITSAKKEFIAGADLTLLQSFRGKPAAEIMGKMSALRDFLRRMETAGKPVVAAMNGTALGGGLEICLACHHRIAVDRPDAVFGLPEAGLGLLPGAGGSQRLPRLIGIKAALPLMLDGSRVSAARGKALGFIDELVAAEELLPAARAWILAHPKAAQPWDQPGFVPPGGDIAGVEMNRWFMALDSKVHADTRGNFPAPRAILSCVYEGLRVPIDVGLAIEFRYLVELVRGDVAQNTIR 287          
BLAST of mRNA_C-australica_Contig_10034.1.1 vs. uniprot
Match: UPI000A9951DE (3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein n=1 Tax=Sphingomonas sp. CCH18-H6 TaxID=1768787 RepID=UPI000A9951DE)

HSP 1 Score: 211 bits (537), Expect = 7.460e-60
Identity = 119/269 (44.24%), Postives = 158/269 (58.74%), Query Frame = 1
Query:   13 GIAEMCWDDPYLKGNVFSTEAIAEWVALVEQVASDPSVRGVLITSGKASFHAGADLSMVSGFFGMSTEDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVSQARSLGQLTDVVPAGALRDAARRWLLDNPAAEQPWMARGYRGPS----ASEIERYFHALNAGLTRDGMADRPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTR 807
            GIA + WD    + NVF+  ++      VE + ++  V+GV+ITS K +FHAGADLSM+S    +   +L + M  +  +L R+ET GKP AAAI GH LGGG E+ALA HARF   D  ++LGLPE  +GLMPG GGTQRLTRL   +     M +G  +   +A  LG +T + P   L  AA+ WLL N  A QPW   G+R PS    +++  ++F A +A L +      P    I EA YHGLQ+P + ALRLE R F  L R
Sbjct:   18 GIAVLTWDMRGREVNVFTERSLEALAVAVEALLAEREVKGVVITSAKKTFHAGADLSMISKMASLPPRELLARMLGLHAALRRIETGGKPFAAAIAGHALGGGLELALACHARFVARDAPVQLGLPEVKVGLMPGLGGTQRLTRLVRLEEALPAMAEGRQFPPGRALELGLVTGLAPRAELVGAAKAWLLSNLEARQPWDRPGFRPPSGPVQSAKGLQFFAAASANLRKHTGGHYPAPGRILEATYHGLQLPFDVALRLEARLFASLVR 286          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10034.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C08E7562.670e-17888.57enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
A0A222E2Q4_9RHOB7.640e-17889.29Fatty acid oxidation complex subunit alpha n=3 Tax... [more]
A0A231V1U6_9HYPH1.500e-16883.57Uncharacterized protein n=1 Tax=Notoacmeibacter ma... [more]
UPI0009801A642.190e-14773.57enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
A0A418ZYD0_9RHOB1.640e-12163.70Enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
A0A348WDB0_9RHOB4.010e-11993.553-hydroxyacyl-CoA dehydrogenase (Fragment) n=1 Tax... [more]
UPI00065C9CA92.060e-11862.28enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
A0A840STD9_9RHOB2.500e-7949.473-hydroxyacyl-CoA dehydrogenase n=1 Tax=Amaricoccu... [more]
UPI001EE1178E4.020e-6041.133-hydroxyacyl-CoA dehydrogenase NAD-binding domain... [more]
UPI000A9951DE7.460e-6044.243-hydroxyacyl-CoA dehydrogenase NAD-binding domain... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10034contigC-australica_Contig_10034:4..843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog414684.RC1_1743
PFAMs3HCDH,3HCDH_N,ECH_1
Model size840
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00029,RC00099,RC00117,RC00241,RC00525,RC00831,RC00834,RC00896,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115
KEGG koko:K01782
KEGG ReactionR01975,R03026,R03045,R03276,R04137,R04170,R04203,R04204,R04224,R04737,R04738,R04739,R04740,R04741,R04744,R04745,R04746,R04748,R04749,R05066,R05305,R06411,R06412,R06941,R06942,R07935,R07951,R08093,R08094
KEGG Pathwayko00071,ko00280,ko00281,ko00310,ko00362,ko00380,ko00410,ko00640,ko00650,ko00903,ko00930,ko01040,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00071,map00280,map00281,map00310,map00362,map00380,map00410,map00640,map00650,map00903,map00930,map01040,map01100,map01110,map01120,map01130,map01200,map01212
KEGG ModuleM00032,M00087
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.72e-52
EggNOG OGsCOG1024@1|root,COG1250@1|root,COG1024@2|Bacteria,COG1250@2|Bacteria,1MU9P@1224|Proteobacteria,2TS8E@28211|Alphaproteobacteria,2JPNR@204441|Rhodospirillales
EC1.1.1.35,4.2.1.17,5.1.2.3
DescriptionBelongs to the enoyl-CoA hydratase isomerase family
Cds size816
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586738.0558755-UTR-C-australica_Contig_10034:3..271682586738.0558755-UTR-C-australica_Contig_10034:3..27Chrysoparadoxa australica CS_1217UTRC-australica_Contig_10034 4..27 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586738.0661724-CDS-C-australica_Contig_10034:27..8431682586738.0661724-CDS-C-australica_Contig_10034:27..843Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10034 28..843 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10034.1.1prot_C-australica_Contig_10034.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10034 28..843 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10034.1.1

>prot_C-australica_Contig_10034.1.1 ID=prot_C-australica_Contig_10034.1.1|Name=mRNA_C-australica_Contig_10034.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=272bp
MCWDDPYLKGNVFSTEAIAEWVALVEQVASDPSVRGVLITSGKASFHAGA
DLSMVSGFFGMSTEDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGF
EMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTAD
MLQGATYDVSQARSLGQLTDVVPAGALRDAARRWLLDNPAAEQPWMARGY
RGPSASEIERYFHALNAGLTRDGMADRPEQKLIAEAVYHGLQMPIEPALR
LEVRRFIELTRNLSVRQTLQAR
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mRNA from alignment at C-australica_Contig_10034:4..843+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10034.1.1 ID=mRNA_C-australica_Contig_10034.1.1|Name=mRNA_C-australica_Contig_10034.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=840bp|location=Sequence derived from alignment at C-australica_Contig_10034:4..843+ (Chrysoparadoxa australica CS_1217)
GTCGACGGACATGGCATTGCAGAGATGTGCTGGGACGATCCGTACCTCAA GGGAAACGTATTTTCAACTGAAGCCATCGCGGAATGGGTGGCACTGGTGG AGCAGGTGGCCTCAGACCCAAGTGTTCGCGGCGTGCTGATCACCTCCGGC AAGGCCTCGTTTCACGCCGGCGCGGACCTGAGCATGGTCAGCGGCTTCTT CGGCATGTCGACCGAGGATCTCTGGTCTGTCATGGCCCGCGTCAAGGACA GCCTTTACCGGCTGGAGACCTGTGGCAAGCCAGTGGCCGCGGCGATCAAC GGGCATTGCCTCGGCGGCGGTTTCGAGATGGCACTGGCGGCGCATGCCAG GTTCGCCGTGGACGATCCAGCGATCAAACTCGGCCTGCCCGAGGCCGGGC TCGGGCTGATGCCGGGCTTTGGTGGCACGCAACGTCTGACGCGGTTGGCG CCGTGGCAGCGGGTGACGGCGGACATGTTGCAGGGGGCCACCTACGACGT GTCGCAAGCGCGATCTTTGGGCCAGCTGACCGATGTGGTTCCTGCGGGTG CCCTGCGCGATGCCGCCCGTCGGTGGCTGCTGGACAATCCCGCCGCCGAA CAACCTTGGATGGCGCGGGGCTATCGTGGGCCATCCGCCTCGGAGATCGA GCGGTACTTCCACGCGCTGAACGCCGGGTTGACCCGTGATGGTATGGCCG ACCGACCCGAGCAGAAGTTGATCGCCGAGGCCGTCTATCACGGGCTGCAA ATGCCCATCGAGCCGGCGCTGCGGCTGGAGGTGCGCCGGTTCATCGAACT GACCCGCAATCTCTCGGTCAGGCAAACCCTGCAGGCTCGC
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Coding sequence (CDS) from alignment at C-australica_Contig_10034:4..843+

>mRNA_C-australica_Contig_10034.1.1 ID=mRNA_C-australica_Contig_10034.1.1|Name=mRNA_C-australica_Contig_10034.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=816bp|location=Sequence derived from alignment at C-australica_Contig_10034:4..843+ (Chrysoparadoxa australica CS_1217)
ATGTGCTGGGACGATCCGTACCTCAAGGGAAACGTATTTTCAACTGAAGC
CATCGCGGAATGGGTGGCACTGGTGGAGCAGGTGGCCTCAGACCCAAGTG
TTCGCGGCGTGCTGATCACCTCCGGCAAGGCCTCGTTTCACGCCGGCGCG
GACCTGAGCATGGTCAGCGGCTTCTTCGGCATGTCGACCGAGGATCTCTG
GTCTGTCATGGCCCGCGTCAAGGACAGCCTTTACCGGCTGGAGACCTGTG
GCAAGCCAGTGGCCGCGGCGATCAACGGGCATTGCCTCGGCGGCGGTTTC
GAGATGGCACTGGCGGCGCATGCCAGGTTCGCCGTGGACGATCCAGCGAT
CAAACTCGGCCTGCCCGAGGCCGGGCTCGGGCTGATGCCGGGCTTTGGTG
GCACGCAACGTCTGACGCGGTTGGCGCCGTGGCAGCGGGTGACGGCGGAC
ATGTTGCAGGGGGCCACCTACGACGTGTCGCAAGCGCGATCTTTGGGCCA
GCTGACCGATGTGGTTCCTGCGGGTGCCCTGCGCGATGCCGCCCGTCGGT
GGCTGCTGGACAATCCCGCCGCCGAACAACCTTGGATGGCGCGGGGCTAT
CGTGGGCCATCCGCCTCGGAGATCGAGCGGTACTTCCACGCGCTGAACGC
CGGGTTGACCCGTGATGGTATGGCCGACCGACCCGAGCAGAAGTTGATCG
CCGAGGCCGTCTATCACGGGCTGCAAATGCCCATCGAGCCGGCGCTGCGG
CTGGAGGTGCGCCGGTTCATCGAACTGACCCGCAATCTCTCGGTCAGGCA
AACCCTGCAGGCTCGC
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