mRNA_C-australica_Contig_10034.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10034.1.1 vs. uniprot
Match: UPI001C08E756 (enoyl-CoA hydratase/isomerase family protein n=1 Tax=Roseovarius nubinhibens TaxID=314263 RepID=UPI001C08E756) HSP 1 Score: 501 bits (1291), Expect = 2.670e-178 Identity = 248/280 (88.57%), Postives = 264/280 (94.29%), Query Frame = 1 Query: 1 VDGHGIAEMCWDDPYLKGNVFSTEAIAEWVALVEQVASDPSVRGVLITSGKASFHAGADLSMVSGFFGMSTEDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVSQARSLGQLTDVVPAGALRDAARRWLLDNPAAEQPWMARGYRGPSASEIERYFHALNAGLTRDGMADRPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTRNLSVRQTLQAR 840 VDGHGIAE+ WDDP K NVFSTEAIA+W ALV+++ASD +RGVLITSGK SFHAGADL MV GFF MS EDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQ+VTADMLQGATYDVS+A+SLG LTDVVPAGALRDAARRWLLD+P AEQPWMARGYRGPSA+E+ER+FHALNAGLTRDG+ADRPEQ+LIAEAVYHGLQMPIEPALRLEVRRFIELTR+ SVR TLQAR Sbjct: 9 VDGHGIAELSWDDPDRKVNVFSTEAIAQWAALVDELASDTDIRGVLITSGKPSFHAGADLRMVGGFFDMSAEDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQKVTADMLQGATYDVSEAKSLGLLTDVVPAGALRDAARRWLLDSPNAEQPWMARGYRGPSAAELERHFHALNAGLTRDGVADRPEQRLIAEAVYHGLQMPIEPALRLEVRRFIELTRDPSVRHTLQAR 288
BLAST of mRNA_C-australica_Contig_10034.1.1 vs. uniprot
Match: A0A222E2Q4_9RHOB (Fatty acid oxidation complex subunit alpha n=3 Tax=Rhodobacterales TaxID=204455 RepID=A0A222E2Q4_9RHOB) HSP 1 Score: 500 bits (1288), Expect = 7.640e-178 Identity = 250/280 (89.29%), Postives = 261/280 (93.21%), Query Frame = 1 Query: 1 VDGHGIAEMCWDDPYLKGNVFSTEAIAEWVALVEQVASDPSVRGVLITSGKASFHAGADLSMVSGFFGMSTEDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVSQARSLGQLTDVVPAGALRDAARRWLLDNPAAEQPWMARGYRGPSASEIERYFHALNAGLTRDGMADRPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTRNLSVRQTLQAR 840 VDGHGIAE+ WDDP K NVFST+AI+EWV LV+QVASDPSVRGVLITSGKASFHAGADL MV FF + EDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLM GFGGTQRLTRLAPWQRVT DMLQG TYDVS+ARSLG LTDVVPAGALRDAARRWLLDNPAAEQ WM RGYRGP+A EIERYFHALNAGLTRDG+A+RPEQ+LIAEA+YHGLQMPIEPALRLEVRRFIELTRN SVRQTLQAR Sbjct: 9 VDGHGIAELRWDDPDRKVNVFSTDAISEWVGLVDQVASDPSVRGVLITSGKASFHAGADLRMVGEFFDIPAEDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMTGFGGTQRLTRLAPWQRVTGDMLQGTTYDVSEARSLGLLTDVVPAGALRDAARRWLLDNPAAEQRWMVRGYRGPTAPEIERYFHALNAGLTRDGVAERPEQRLIAEAIYHGLQMPIEPALRLEVRRFIELTRNPSVRQTLQAR 288
BLAST of mRNA_C-australica_Contig_10034.1.1 vs. uniprot
Match: A0A231V1U6_9HYPH (Uncharacterized protein n=1 Tax=Notoacmeibacter marinus TaxID=1876515 RepID=A0A231V1U6_9HYPH) HSP 1 Score: 477 bits (1227), Expect = 1.500e-168 Identity = 234/280 (83.57%), Postives = 252/280 (90.00%), Query Frame = 1 Query: 1 VDGHGIAEMCWDDPYLKGNVFSTEAIAEWVALVEQVASDPSVRGVLITSGKASFHAGADLSMVSGFFGMSTEDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVSQARSLGQLTDVVPAGALRDAARRWLLDNPAAEQPWMARGYRGPSASEIERYFHALNAGLTRDGMADRPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTRNLSVRQTLQAR 840 VDGHGIAE+CW DP K NVFS EAI+EW A+VEQVA DP++RGVLITSGK SFHAGADL MV GF MS E+LW+VMARVKDS YRLETCGKPVAAAINGHCLGGGFEMAL+ HARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPW+RVT DML G TYDVS+ARSLG LTD+VP ALRD ARRWLLDN AA QPWMARGYRGP+A +IE++FHALNAGLTRDG+ADRPEQ+LIAEAVYHGLQMPIEPALRLEVRRF+ELTR SVRQ LQAR Sbjct: 9 VDGHGIAELCWADPDRKVNVFSAEAISEWAAMVEQVAFDPAIRGVLITSGKPSFHAGADLRMVGGFSDMSVEELWTVMARVKDSFYRLETCGKPVAAAINGHCLGGGFEMALSTHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWRRVTPDMLHGVTYDVSEARSLGLLTDIVPEDALRDVARRWLLDNSAAHQPWMARGYRGPAAPDIEQFFHALNAGLTRDGVADRPEQRLIAEAVYHGLQMPIEPALRLEVRRFVELTRIPSVRQALQAR 288
BLAST of mRNA_C-australica_Contig_10034.1.1 vs. uniprot
Match: UPI0009801A64 (enoyl-CoA hydratase/isomerase family protein n=1 Tax=Roseibium aggregatum TaxID=187304 RepID=UPI0009801A64) HSP 1 Score: 423 bits (1088), Expect = 2.190e-147 Identity = 206/280 (73.57%), Postives = 232/280 (82.86%), Query Frame = 1 Query: 1 VDGHGIAEMCWDDPYLKGNVFSTEAIAEWVALVEQVASDPSVRGVLITSGKASFHAGADLSMVSGFFGMSTEDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVSQARSLGQLTDVVPAGALRDAARRWLLDNPAAEQPWMARGYRGPSASEIERYFHALNAGLTRDGMADRPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTRNLSVRQTLQAR 840 D +GIAE+ WDDP K NVFS EAI EWV LVE+VA D ++ GVL+TSGK+ FHAGADL M+ GFF M+ +DLWSVMAR+KDS YRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVD PA K+GLPEAGLGLMPGFGGTQR+TRLAPWQR DML GATYDV+ A+SLG + +VV ALRD A WLL NP A+QPWM RGYRGP + ER+FH LNAGL RDG+ RPEQ+LIAEAVYHGLQMPIEPALRLEVRRFIEL + SV++T+Q R Sbjct: 9 TDAYGIAELYWDDPQRKVNVFSAEAIQEWVTLVERVAVDDTIHGVLLTSGKSMFHAGADLRMIGGFFDMTPKDLWSVMARIKDSFYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDVPAAKIGLPEAGLGLMPGFGGTQRMTRLAPWQRAVEDMLAGATYDVTTAKSLGLVREVVSPDALRDTAHAWLLANPEAQQPWMVRGYRGPGGATFERFFHKLNAGLIRDGVEGRPEQRLIAEAVYHGLQMPIEPALRLEVRRFIELVQIPSVKETMQRR 288
BLAST of mRNA_C-australica_Contig_10034.1.1 vs. uniprot
Match: A0A418ZYD0_9RHOB (Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Paracoccus aestuarii TaxID=453842 RepID=A0A418ZYD0_9RHOB) HSP 1 Score: 358 bits (918), Expect = 1.640e-121 Identity = 179/281 (63.70%), Postives = 212/281 (75.44%), Query Frame = 1 Query: 1 VDGHGIAEMCWDDPYLKGNVFSTEAIAEWVALVEQVASDPSVRGVLITSGKASFHAGADLSMVSGFFGMSTEDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVSQARSLGQLTDVVPAGALRDAARRWLLDNPAAEQPWMARGYRGP-SASEIERYFHALNAGLTRDGMADRPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTRNLSVRQTLQAR 840 VD GIAE+ WDDP K NVFS IAE+ A+V ++ D ++RGVLITSGK SFHAGADL+MVSGFF MS DLW +M+ V S YRLETCGKPV AA+NGHCLGGGFEMALAAHARF DDP I++GLPEAGLGLMPGFGGTQR+ R+APW++ D+++G +D A SLG + VVPA L AAR WL A+QPW RGYR P +A++ E+YF ALNA L RDG ADRPE++LIAE +YHGLQ+PIEPALR EVR FIEL VR T++ R Sbjct: 9 VDAEGIAELRWDDPARKVNVFSAAEIAEFAAIVTRIRDDNAIRGVLITSGKGSFHAGADLNMVSGFFDMSAADLWEIMSLVMTSFYRLETCGKPVVAALNGHCLGGGFEMALAAHARFVADDPRIRIGLPEAGLGLMPGFGGTQRMARIAPWKQAAEDIMEGRCHDPQTALSLGLVGGVVPADGLEAAARDWLWCTCEAKQPWAVRGYRPPGAAADFEQYFTALNAALIRDGAADRPERRLIAETLYHGLQLPIEPALRHEVRCFIELAGMPDVRSTMRQR 289
BLAST of mRNA_C-australica_Contig_10034.1.1 vs. uniprot
Match: A0A348WDB0_9RHOB (3-hydroxyacyl-CoA dehydrogenase (Fragment) n=1 Tax=Roseovarius nubinhibens TaxID=314263 RepID=A0A348WDB0_9RHOB) HSP 1 Score: 348 bits (892), Expect = 4.010e-119 Identity = 174/186 (93.55%), Postives = 181/186 (97.31%), Query Frame = 1 Query: 283 VAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVSQARSLGQLTDVVPAGALRDAARRWLLDNPAAEQPWMARGYRGPSASEIERYFHALNAGLTRDGMADRPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTRNLSVRQTLQAR 840 VAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVS+A+SLG LTDVVPAGALRDAARRWLLD+P AEQPWMARGYRGPSA+EIER+FHALNAGLTRDG+A RPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTR+ SVR TLQAR Sbjct: 1 VAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVSEAKSLGLLTDVVPAGALRDAARRWLLDSPNAEQPWMARGYRGPSAAEIERHFHALNAGLTRDGVAGRPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTRDPSVRHTLQAR 186
BLAST of mRNA_C-australica_Contig_10034.1.1 vs. uniprot
Match: UPI00065C9CA9 (enoyl-CoA hydratase/isomerase family protein n=1 Tax=Sphingomonas sp. MEA3-1 TaxID=1647414 RepID=UPI00065C9CA9) HSP 1 Score: 350 bits (898), Expect = 2.060e-118 Identity = 175/281 (62.28%), Postives = 212/281 (75.44%), Query Frame = 1 Query: 1 VDGHGIAEMCWDDPYLKGNVFSTEAIAEWVALVEQVASDPSVRGVLITSGKASFHAGADLSMVSGFFGMSTEDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVSQARSLGQLTDVVPAGALRDAARRWLLDNPAAEQPWMARGYRGPSASE-IERYFHALNAGLTRDGMADRPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTRNLSVRQTLQAR 840 VD GIAE+ WD+P K NVFS EAI ++ ALV ++ SD S+RGV+ITSGK+ FHAGADL+MVSGFF +S +LW +M+++ S Y+LETCGKPV AA+NGHCLGGGFEMALAAHARFAVDDP I++GLPEAGLGLMPGFGGTQR+ R+APWQ+ D+++G YD A SLG + VVPA L AAR WL A QPWM RGYR P AS + +F NAGL+RDG+ PE++LIAE +YHGLQ+PIEPALR EVR FIEL VR T++ R Sbjct: 9 VDAAGIAELRWDNPARKVNVFSAEAIEDFAALVARITSDDSIRGVMITSGKSVFHAGADLNMVSGFFDLSPAELWQIMSKIMASFYQLETCGKPVVAALNGHCLGGGFEMALAAHARFAVDDPKIRIGLPEAGLGLMPGFGGTQRMARIAPWQQAARDIIEGRCYDPQTAASLGLVDGVVPAEGLEAAARDWLFCAQDAAQPWMRRGYRPPGASAGYDDFFAVFNAGLSRDGIDAWPERRLIAETLYHGLQLPIEPALRHEVRCFIELAGMPEVRHTMRQR 289
BLAST of mRNA_C-australica_Contig_10034.1.1 vs. uniprot
Match: A0A840STD9_9RHOB (3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Amaricoccus macauensis TaxID=57001 RepID=A0A840STD9_9RHOB) HSP 1 Score: 263 bits (671), Expect = 2.500e-79 Identity = 140/283 (49.47%), Postives = 182/283 (64.31%), Query Frame = 1 Query: 1 VDGHGIAEMCWDDPYLKGNVFSTEAIAEWVALVEQVASDPSVRGVLITSGKASFHAGADLSMVSGFFGMSTEDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVSQARSLGQLTDVVPAGALRDAARRWLLDN----PAAEQPWMARGYRGPSASE-IERYFHALNAGLTRDGMADRPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTRNLSVRQTLQ 834 V+ G+A + W+ P NVFS A+A + A V ++ASDP + G ++ S +FHAGADL V F S + +W+ + V S RLETCGKPV AAINGH LGGGFEMALA H R DDPAI+LGLPE+ +GLMPGFGGTQRL RL ++ DM++G T+ A +LG + +VV ALR+ AR+ +L+ A QPW RG P+A +F NA TR +RP ++L+AEAVYHGLQMPI+PALRLE RRF+EL+R + R L+ Sbjct: 10 VESDGVATLLWE-PQGPMNVFSEAALASFDAAVGRIASDPVIVGAIVASSGRAFHAGADLDFVMELFDRSPQQVWAFLEAVMTSFRRLETCGKPVVAAINGHALGGGFEMALACHGRVVADDPAIRLGLPESAIGLMPGFGGTQRLPRLIEYRSAVRDMVKGRTWSPRDALALGAVDEVVAPDALRETARKRVLERLGNKTGATQPWDRRGTISPAADPGFAGFFTEFNAAQTRANWGNRPAERLVAEAVYHGLQMPIDPALRLEARRFVELSRIPATRAVLR 291
BLAST of mRNA_C-australica_Contig_10034.1.1 vs. uniprot
Match: UPI001EE1178E (3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein n=1 Tax=unclassified Xanthobacter TaxID=2623496 RepID=UPI001EE1178E) HSP 1 Score: 212 bits (539), Expect = 4.020e-60 Identity = 116/282 (41.13%), Postives = 167/282 (59.22%), Query Frame = 1 Query: 1 VDGHGIAEMCWDDPYLKGNVFSTEAIAEWVALVEQVASDPSVRGVLITSGKASFHAGADLSMVSGFFGMSTEDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVSQARSLGQLTDVVPAGALRDAARRWLLDNPAAEQPWMARGYRGPSAS----EIERYFHALNAGLTRDGMADRPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTRNLSVRQTLQ 834 +D GIA + WD P NV S +A +++A+ E +DP+V+GV+ITS K F AGADL+++ F G ++ M+ ++D L R+ET GKPV AA+NG LGGG E+ LA H R AVD P GLPEAGLGL+PG GG+QRL RL + ML G+ ++ ++LG + ++V A L AAR W+L +P A QPW G+ P E+ R+F AL++ + D + P + I VY GL++PI+ L +E R +EL R + T++ Sbjct: 6 LDADGIATVTWDLPGRPVNVLSMDARLKFIAVTEAALNDPAVKGVIITSAKKEFIAGADLTLLQSFRGKPAAEIMGKMSALRDFLRRMETAGKPVVAAMNGTALGGGLEICLACHHRIAVDRPDAVFGLPEAGLGLLPGAGGSQRLPRLIGIKAALPLMLDGSRVSAARGKALGFIDELVAAEELLPAARAWILAHPKAAQPWDQPGFVPPGGDIAGVEMNRWFMALDSKVHADTRGNFPAPRAILSCVYEGLRVPIDVGLAIEFRYLVELVRGDVAQNTIR 287
BLAST of mRNA_C-australica_Contig_10034.1.1 vs. uniprot
Match: UPI000A9951DE (3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein n=1 Tax=Sphingomonas sp. CCH18-H6 TaxID=1768787 RepID=UPI000A9951DE) HSP 1 Score: 211 bits (537), Expect = 7.460e-60 Identity = 119/269 (44.24%), Postives = 158/269 (58.74%), Query Frame = 1 Query: 13 GIAEMCWDDPYLKGNVFSTEAIAEWVALVEQVASDPSVRGVLITSGKASFHAGADLSMVSGFFGMSTEDLWSVMARVKDSLYRLETCGKPVAAAINGHCLGGGFEMALAAHARFAVDDPAIKLGLPEAGLGLMPGFGGTQRLTRLAPWQRVTADMLQGATYDVSQARSLGQLTDVVPAGALRDAARRWLLDNPAAEQPWMARGYRGPS----ASEIERYFHALNAGLTRDGMADRPEQKLIAEAVYHGLQMPIEPALRLEVRRFIELTR 807 GIA + WD + NVF+ ++ VE + ++ V+GV+ITS K +FHAGADLSM+S + +L + M + +L R+ET GKP AAAI GH LGGG E+ALA HARF D ++LGLPE +GLMPG GGTQRLTRL + M +G + +A LG +T + P L AA+ WLL N A QPW G+R PS +++ ++F A +A L + P I EA YHGLQ+P + ALRLE R F L R Sbjct: 18 GIAVLTWDMRGREVNVFTERSLEALAVAVEALLAEREVKGVVITSAKKTFHAGADLSMISKMASLPPRELLARMLGLHAALRRIETGGKPFAAAIAGHALGGGLELALACHARFVARDAPVQLGLPEVKVGLMPGLGGTQRLTRLVRLEEALPAMAEGRQFPPGRALELGLVTGLAPRAELVGAAKAWLLSNLEARQPWDRPGFRPPSGPVQSAKGLQFFAAASANLRKHTGGHYPAPGRILEATYHGLQLPFDVALRLEARLFASLVR 286 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10034.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10034.1.1 >prot_C-australica_Contig_10034.1.1 ID=prot_C-australica_Contig_10034.1.1|Name=mRNA_C-australica_Contig_10034.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=272bp MCWDDPYLKGNVFSTEAIAEWVALVEQVASDPSVRGVLITSGKASFHAGAback to top mRNA from alignment at C-australica_Contig_10034:4..843+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10034.1.1 ID=mRNA_C-australica_Contig_10034.1.1|Name=mRNA_C-australica_Contig_10034.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=840bp|location=Sequence derived from alignment at C-australica_Contig_10034:4..843+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10034:4..843+ >mRNA_C-australica_Contig_10034.1.1 ID=mRNA_C-australica_Contig_10034.1.1|Name=mRNA_C-australica_Contig_10034.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=816bp|location=Sequence derived from alignment at C-australica_Contig_10034:4..843+ (Chrysoparadoxa australica CS_1217)back to top |