mRNA_C-australica_Contig_10.10.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10.10.1
Unique NamemRNA_C-australica_Contig_10.10.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10contigC-australica_Contig_10:26412..31574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size2082
Hectar predicted targeting categorymitochondrion
Exons18
Cds size2082
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586729.4835794-CDS-C-australica_Contig_10:26411..264351682586729.4835794-CDS-C-australica_Contig_10:26411..26435Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 26412..26435 -
1682586729.4938633-CDS-C-australica_Contig_10:26686..268961682586729.4938633-CDS-C-australica_Contig_10:26686..26896Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 26687..26896 -
1682586729.5025675-CDS-C-australica_Contig_10:27161..274521682586729.5025675-CDS-C-australica_Contig_10:27161..27452Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 27162..27452 -
1682586729.5116258-CDS-C-australica_Contig_10:27614..277531682586729.5116258-CDS-C-australica_Contig_10:27614..27753Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 27615..27753 -
1682586729.5212965-CDS-C-australica_Contig_10:27955..280301682586729.5212965-CDS-C-australica_Contig_10:27955..28030Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 27956..28030 -
1682586729.5308156-CDS-C-australica_Contig_10:28244..283181682586729.5308156-CDS-C-australica_Contig_10:28244..28318Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 28245..28318 -
1682586729.540066-CDS-C-australica_Contig_10:28420..284891682586729.540066-CDS-C-australica_Contig_10:28420..28489Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 28421..28489 -
1682586729.55491-CDS-C-australica_Contig_10:28688..287641682586729.55491-CDS-C-australica_Contig_10:28688..28764Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 28689..28764 -
1682586729.5663068-CDS-C-australica_Contig_10:28855..289231682586729.5663068-CDS-C-australica_Contig_10:28855..28923Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 28856..28923 -
1682586729.5750732-CDS-C-australica_Contig_10:29051..291821682586729.5750732-CDS-C-australica_Contig_10:29051..29182Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 29052..29182 -
1682586729.5842097-CDS-C-australica_Contig_10:29250..292861682586729.5842097-CDS-C-australica_Contig_10:29250..29286Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 29251..29286 -
1682586729.594457-CDS-C-australica_Contig_10:29552..296341682586729.594457-CDS-C-australica_Contig_10:29552..29634Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 29553..29634 -
1682586729.6037812-CDS-C-australica_Contig_10:29768..298291682586729.6037812-CDS-C-australica_Contig_10:29768..29829Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 29769..29829 -
1682586729.6161807-CDS-C-australica_Contig_10:30157..304451682586729.6161807-CDS-C-australica_Contig_10:30157..30445Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 30158..30445 -
1682586729.638357-CDS-C-australica_Contig_10:30687..308201682586729.638357-CDS-C-australica_Contig_10:30687..30820Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 30688..30820 -
1682586729.6507185-CDS-C-australica_Contig_10:30974..310161682586729.6507185-CDS-C-australica_Contig_10:30974..31016Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 30975..31016 -
1682586729.660788-CDS-C-australica_Contig_10:31117..312061682586729.660788-CDS-C-australica_Contig_10:31117..31206Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 31118..31206 -
1682586729.670682-CDS-C-australica_Contig_10:31380..315741682586729.670682-CDS-C-australica_Contig_10:31380..31574Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10 31381..31574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10.10.1prot_C-australica_Contig_10.10.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10 26412..31574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10.10.1

>prot_C-australica_Contig_10.10.1 ID=prot_C-australica_Contig_10.10.1|Name=mRNA_C-australica_Contig_10.10.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=694bp
AAVELQRLYRGMMVRRVWLPKLAEANRRRACLTSFRERVLGKQVTSIKRR
WRRHLEWREKNLHGRRKLRGMLAEIGCGHLYRVCGMEPEDPVQRGILGRA
CQVAMLTEGTRPSALPTLRELTMLLQFVKEFGKSRRQLRKELVSKWRKTI
TGRAQARQLEAQSSGKEWLNGYRERQQLLQRLSEMIRNADDEETKKKLVR
MHTHHRLEQIEEQRRREEEMESYLMWRAEMCQHASEHQLKVKHAEAEDRE
RNLMRWEEVRQRRKQVIDSVVQLRKDELSKEEVALRAKFPDRFASPATEG
STPSSACEGYLMVKKGLEAHLKGGTVTVDVLLRRTEACNLAYDAISKLKE
AEEELLCCRKRWHHCRSKSQRDRARYLELRSAQKKLKCKTRTERKRFGTK
VTNSEARALSAQQDAKEALASAKLAVISRTKAVATVCGMEPPAALMKRWS
QAKTYHQALARSIDGWCRAEARRFRKRHHFDLVLRLQRAAELAGQPREHY
CSAALAHQTATGDLTSLAAVLHFEADLRVVQHGKKRQTVSIPLAPWMGVG
LASELQWGWKEGHEACDWKGLGAAAFNAVVKPRLALTGGTLTLGEDKGSG
SSLPDSLVPHATWEAEVDGQLCSVSTSFLLEGCLQVNPESGQGSIKMERK
EWESAVTSFVAHRPVCGNCRKSFGAWLCVSSRVLCETCKCLLIR
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mRNA from alignment at C-australica_Contig_10:26412..31574-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10.10.1 ID=mRNA_C-australica_Contig_10.10.1|Name=mRNA_C-australica_Contig_10.10.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=5163bp|location=Sequence derived from alignment at C-australica_Contig_10:26412..31574- (Chrysoparadoxa australica CS_1217)
GCGGCTGTGGAGCTGCAGAGGCTGTACCGTGGGATGATGGTGAGGCGGGT GTGGCTGCCTAAGCTGGCTGAGGCAAACAGGAGGCGAGCCTGCTTGACCA GCTTTAGAGAGCGAGTGCTTGGGAAGCAGGTGACATCCATAAAGCGAAGA TGGCGGAGGCATCTGGAATGGAGAGAGAAGAACCTGCATGGCAGGTAAGC TTCCTTGGTCAGCTCAATGGACCGTTCGTGTATGGGTTTGGACCGTCATG GCATGATGGTTGACAGCCATTCTTTGATTGGTCCTAGCAACTGCTTTGCT CTGATGAGCTCCGCACCATCTAGCATTCACTGGCCCTGGCCTTAACCTTG CCTCACTGTTTGCCGTAGGAGGAAGCTGCGAGGCATGCTGGCTGAGATAG GGTGCGGTCACTTGTATAGGGTGTGTGGAATGGAGCCAGAGGATCCAGTT CAGAGAGGTAGTATGCTTGCATTATTGATGATCTATTGATGTGCAGGAAC CCTCAACAATTTAACTTCATCTTAACCGGAACGCTCACCTCTAATCTTGC TTCTTCAGGTATCCTTGGAAGGGCTTGCCAAGTGGCAATGCTCACCGAAG GTGGTAACCTTCTTTGCCTGAAGTTTTTAATCTCAATTCTTGGTGCCTCA CAGACCTGAGTGGGAATGCTTATGCTTTCATGATGCCCAGAGTTTCGCGG CACGCTTGCGTTTACTATCCCCTCTTCCCTTCTCCTCTCCTTTGTTTCTC ACAGGCACTAGGCCCTCCGCGCTACCTACATTGCGGGAGCTCACAATGCT GCTGCAGTTTGTGAAAGAGTTTGGGAAGTCACGCCGGCAACTGAGGAAGG AGCTCGTGTCTAAGTGGAGGAAGACGATCACGGGCAGGTGTGATGCTTAT CTCCTGCTCCCAAGCCAACTCTCGCATATCCCCAACACTGCCTGAGTTAC TAAAGCAACACAGATCGCCCCTCGAGTGCCAGGTGCACCGCATAGCACTT GGGTATTTTACTCATCAATGCAATATGGACCACTCACATCTCAGGCTGTG CTGCATTTTCACTGCTTGTTCTGGCCTTTATCCTGCTGGCACCTAAACGC CCACGCTAACGTCATTGCGTGCTCAACAGGGCTCAAGCCAGGCAGCTAGA AGCGCAGAGCTCAGGGAAAGAGTGGCTAAATGGCTACAGAGAGCGGCAGC AGTTGCTGCAGAGGCTGAGTGAGATGATACGGAATGCAGATGATGAAGAG ACAAAGAAAAAACTGGTGAGGATGCACACGCATCATCGCTTGGAGCAGAT TGAGGAGCAGAGGCGACGGGAGGAGGAAATGGAGTCCTACTTGATGTGGA GGGCAGAGATGTGCCAGCATGCCTCAGAGCACCAGCTGAAGGTGAAGCAT GCAGAAGCAGAGGACAGGCAAGGAGGCTACTTCTATACCACCCTAGCCCA CATTAAGAACGTCCCAAACCTAGCGTAGCTTAAAGCTTCTCCAGTCCGGT CTACTTTTCTCCTAATCAGCATAGTATAACCAACTCTAGGTCCAACTCAC CTATCTCACCATTACCCCTTTGCCTCCTTCAATTCAATGCGACCTCTCGA GTTCTGTGAGGGTTTTAGTTCAGTCAAACCAATCTATGGTAGCCTGCCGT GTCAGTTTGGCGCTGCTGTCTTAATTAATTCAGATCCATTTGGTAATGCT ACCTGCGCATAATTCACGCCTCCCTTTGGTAATGCTACTGCTCAGGGAGC GGAACCTGATGAGGTGGGAGGAGGTGCGGCAGAGGAGGAAGCAAGTCATA GACAGTGTGAGTGACCCTTTCGTGATGAGTGGGCGCTGGATTAAGGATCA GATGCAGTCCATGCCTGTCTTAACTTCCCCGTCTTTATCTTCCTGCTGTT GGAATGCCACTGAGTTTTATCCACCTCGCCGGCCTGGCAGGTGGTGCAGC TTCGGAAGGATGAGCTCTCCAAGGAAGAGGTGGCCCTAAGAGCAAAGTTC CCTGACCGCTTTGCAAGTCCAGGTACTCAGAGCCCAGAGCACTCACTAAG ATTTTTGCATGCTTCTTGCCTTATTCTCACTTTGGCTGCTTTCCTTTATC CACCAAGCCTCTCCCCCATTCAATCCTGCACCCATGCTCAGGTCAGCTAC ATCCCAGGATTGCTCATACGCTCCTGACAATCTGTGAACACTCTGCGCAG TAACTGCAAAAGATTAACTCACTCTTGGCTTCCACCTTACGCCCAGTCTT CTGCCATTCTTTGCCTATCACTTCTCTTAACACTTCAGCTACAGAAGGCA GCACCCCGAGTAGTGCATGTGAAGGTGATCACTTGCCTCTCACTTGGTCT TCACTTGCTCCTCACTTATCCTGACCTAAGCCATCACTTTAGGCTACTTG ATGGTAAAGAAGGGTTTGGAAGCACATTTAAAGGGAGGAACGGTGACGGT AGATGTGCTCCTGAGGCGAACTGAAGCTTGTAACCTTGCGTACGATGCCA TTTCAAAGTTGAAGGAAGCTGAGGTGCTCATTAGCGCTACCTGGACTAAC TACCCGAAGCTCCTTCCTTGCCCTTGCCTTTGCCCTTATCTAAGCTGAGC CTCTAACCTTACCATGCCAATGCATGCTGCACCTCAACTCATAAACCTCA GGAAGAGCTGCTGTGCTGCAGGAAGAGGTGGCACCACTGCAGGTCCAAGT CACAACGAGACAGAGCGAGGTCGTTCCCAAACTAAAAAAGATGTGATTTG ATCTTTGATCCCCACGAGACCTAGGTTGGCTAACCTGACAAGACATCACC ACCATGTAAGATATCTTGAGCTACGGAGTGCACAGAAAAAGCTCAAGTGC AAAACGCGAACTGAGAGGAAGCGATTTGGAACCAAGGTGGGGAGCTCAGA CATGCTGCTTGGAGAGGATCAGTTTTCTTTCCTTGGAAAAGGCTTTTAAT TCCTTCAATTTCTTCTTTACCTATTTATACCTATTTGCATACGTGTCGCC CTATCTGTCTTTGGATTTTTCGCTTTCTCACCGGAGCTTTCTACTTGTTC TGAAATGGCCCGCCCTCTTGCCCTTGCATTGCCAGGTCACAAATAGTGAA GCCAGAGCCCTGTCTGCGCAGCAAGATGCCAAGGAAGCCCTCGCCTCAGC AAAGGTTGACCTCACTCATAGCCAAGCCACCATAGCCATCTTGGTGTGTC GCCACTGCTCTGCCTGACAATGCCTGGCAAATGTGCGCTTCTGTTCCTTC GACCAGCTGGCTGTGATTAGTCGTACAAAGGCTGTGGCTACAGTGTGTGG CATGGAGCCCCCAGCAGCCTTGATGAAGCGGTAAGGGTGTGTTGAGAGCT CTCAGAGACGTTCTCGGTGCATTATTAGACAAATAGCACTCAGCTTTACA ACGGAATTACTCAAATCCTCCGCGATACTTCAATCAGCTGCTGTGATTTA AGCTCCTGCGAACGCTATCACTACACTCTGCTAATTCGAGAGTCCTCATG GCTTGAACTTACACAAGCTGACTCTAAGTGTACACCACCTTCAGGTGGTC CCAAGCTAAGACTTACCATCAAGCACTGGCTCGAAGCATTGACGGCTGGT GCCGGGCAGAGGCTCGCAGGTGTGGTGACCACAACTGACCAAACCTGACT TATTATACCTGGTCCAGTAAAGCTACTTACTTACTGCAAAGGCTAGCAAG TATACATTAGCTGTTGCCACTGCAAAGTGCCACCCCACACTGAGTGCTGA GCCCATGCTGTCCAGTTGCATCCACCATAGGTCCTTGACCTCCTCATGAA CCACCTCCTCTGAACACACAGGTTCAGGAAGAGGCACCATTTTGACTTGG TGTTGCGGCTGCAGCGAGCAGCAGAGCTGGCTGGGCAGCCTAGAGAGCAC TACTGCAGTGCTGCTTTGGCACATCAAACTGCGACTGGTGACTTAACGTC ACTTGCTGCAGTGAGTGCTCATGTGCATGTGCTGATACCAGCTCATAACC AACCATTGCCCTTTGCAGAACTTATCAAATGGCCTTGCGTTGCCCGACTT AAAGTCATGCTGCGCTATATTGCACCGCGTGCCAGCCAAGGAATGACTTT ACAAACACGTGATGATGCCCAGGTGTTGCACTTTGAAGCAGATTTGCGCG TTGTACAGCACGGAAAGAAGAGGCAAACTGTGAGCATCCCTCTGGCACCT TGGATGGGTGTAGGGCTGGCAAGTGAGCTTCAGTGGGGATGGAAGGAGGG GCATGAAGCATGTGATTGGAAGGGACTGGGAGCTGCCGCATTCAATGCAG TGGTCAAGCCGCGTCTTGCGTTAACAGGGGGGACTCTTACTCTTGGGGAA GATAAAGGCAGCGGAAGCTCTCTTCCTGACAGCTTGGTACCGCACGCGAC ATGGGAAGCTGAGGTGACGTTAGCAGACAAGATCAGACTAGACCAGCCTG TAGTACGTATCCTGTAGCATGCAGATACTTTGTGTTAGCGGTGGTCTGTG TTGCCAGTGAGAGCATTTATGTACAAGTGTACAACTCTACCTTTAGGAGA TGTGCAAGTTCATGATTATAATGGGCAGGTAGATGATGAATTGAGGATGT GCTGAGTCTAGCTGCTCTACTGGTCGCAGCAACATTCTCCCAAAGCAATC AATCACACCACTCCATCATTGCTCTCAGGTTGATGGACAGCTGTGCTCAG TGAGTACCAGCTTTTTATTGGAGGGCTGCCTACAAGTCAACCCAGAATCT GGCCAGGGCTCCATAAAGATGGAAAGGAAAGAATGGGAATCAGCAGTTAC AAGCTTTGTGGCCCACCGACCTGTGTGCGGCAACTGCCGAAAGAGCTTTG GTGCCTGGCTTTGTGTCAGTTCAAGGGTATTGTGTGAGGTGAGTTGGTGC CGATGCCTGAAGTACTAATGATGGGAAAACCAGTTGGCCAGACTATCCCA CATGTTGCCTTGAGCTTTAATGCGGATCTAACTGATAGACTCATTCACGT TTAATCCTGCTGCGCCGCACATTGCTGACATTTGAACCCATGATTGAATG ATTGATGGTGATGGAACCCCAATACTTTATCAACTGGCCGCTTCTCACAT GGCCACAGCTCACTCACTTCCCTATTTTACCGTTCACAGACGTGCAAATG CCTGCTAATCCGC
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Coding sequence (CDS) from alignment at C-australica_Contig_10:26412..31574-

>mRNA_C-australica_Contig_10.10.1 ID=mRNA_C-australica_Contig_10.10.1|Name=mRNA_C-australica_Contig_10.10.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=2082bp|location=Sequence derived from alignment at C-australica_Contig_10:26412..31574- (Chrysoparadoxa australica CS_1217)
GCGGCTGTGGAGCTGCAGAGGCTGTACCGTGGGATGATGGTGAGGCGGGT
GTGGCTGCCTAAGCTGGCTGAGGCAAACAGGAGGCGAGCCTGCTTGACCA
GCTTTAGAGAGCGAGTGCTTGGGAAGCAGGTGACATCCATAAAGCGAAGA
TGGCGGAGGCATCTGGAATGGAGAGAGAAGAACCTGCATGGCAGGAGGAA
GCTGCGAGGCATGCTGGCTGAGATAGGGTGCGGTCACTTGTATAGGGTGT
GTGGAATGGAGCCAGAGGATCCAGTTCAGAGAGGTATCCTTGGAAGGGCT
TGCCAAGTGGCAATGCTCACCGAAGGCACTAGGCCCTCCGCGCTACCTAC
ATTGCGGGAGCTCACAATGCTGCTGCAGTTTGTGAAAGAGTTTGGGAAGT
CACGCCGGCAACTGAGGAAGGAGCTCGTGTCTAAGTGGAGGAAGACGATC
ACGGGCAGGGCTCAAGCCAGGCAGCTAGAAGCGCAGAGCTCAGGGAAAGA
GTGGCTAAATGGCTACAGAGAGCGGCAGCAGTTGCTGCAGAGGCTGAGTG
AGATGATACGGAATGCAGATGATGAAGAGACAAAGAAAAAACTGGTGAGG
ATGCACACGCATCATCGCTTGGAGCAGATTGAGGAGCAGAGGCGACGGGA
GGAGGAAATGGAGTCCTACTTGATGTGGAGGGCAGAGATGTGCCAGCATG
CCTCAGAGCACCAGCTGAAGGTGAAGCATGCAGAAGCAGAGGACAGGGAG
CGGAACCTGATGAGGTGGGAGGAGGTGCGGCAGAGGAGGAAGCAAGTCAT
AGACAGTGTGGTGCAGCTTCGGAAGGATGAGCTCTCCAAGGAAGAGGTGG
CCCTAAGAGCAAAGTTCCCTGACCGCTTTGCAAGTCCAGCTACAGAAGGC
AGCACCCCGAGTAGTGCATGTGAAGGCTACTTGATGGTAAAGAAGGGTTT
GGAAGCACATTTAAAGGGAGGAACGGTGACGGTAGATGTGCTCCTGAGGC
GAACTGAAGCTTGTAACCTTGCGTACGATGCCATTTCAAAGTTGAAGGAA
GCTGAGGAAGAGCTGCTGTGCTGCAGGAAGAGGTGGCACCACTGCAGGTC
CAAGTCACAACGAGACAGAGCGAGATATCTTGAGCTACGGAGTGCACAGA
AAAAGCTCAAGTGCAAAACGCGAACTGAGAGGAAGCGATTTGGAACCAAG
GTCACAAATAGTGAAGCCAGAGCCCTGTCTGCGCAGCAAGATGCCAAGGA
AGCCCTCGCCTCAGCAAAGCTGGCTGTGATTAGTCGTACAAAGGCTGTGG
CTACAGTGTGTGGCATGGAGCCCCCAGCAGCCTTGATGAAGCGGTGGTCC
CAAGCTAAGACTTACCATCAAGCACTGGCTCGAAGCATTGACGGCTGGTG
CCGGGCAGAGGCTCGCAGGTTCAGGAAGAGGCACCATTTTGACTTGGTGT
TGCGGCTGCAGCGAGCAGCAGAGCTGGCTGGGCAGCCTAGAGAGCACTAC
TGCAGTGCTGCTTTGGCACATCAAACTGCGACTGGTGACTTAACGTCACT
TGCTGCAGTGTTGCACTTTGAAGCAGATTTGCGCGTTGTACAGCACGGAA
AGAAGAGGCAAACTGTGAGCATCCCTCTGGCACCTTGGATGGGTGTAGGG
CTGGCAAGTGAGCTTCAGTGGGGATGGAAGGAGGGGCATGAAGCATGTGA
TTGGAAGGGACTGGGAGCTGCCGCATTCAATGCAGTGGTCAAGCCGCGTC
TTGCGTTAACAGGGGGGACTCTTACTCTTGGGGAAGATAAAGGCAGCGGA
AGCTCTCTTCCTGACAGCTTGGTACCGCACGCGACATGGGAAGCTGAGGT
TGATGGACAGCTGTGCTCAGTGAGTACCAGCTTTTTATTGGAGGGCTGCC
TACAAGTCAACCCAGAATCTGGCCAGGGCTCCATAAAGATGGAAAGGAAA
GAATGGGAATCAGCAGTTACAAGCTTTGTGGCCCACCGACCTGTGTGCGG
CAACTGCCGAAAGAGCTTTGGTGCCTGGCTTTGTGTCAGTTCAAGGGTAT
TGTGTGAGACGTGCAAATGCCTGCTAATCCGC
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